Clone LD33046 Report

Search the DGRC for LD33046

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:330
Well:46
Vector:pOT2
Associated Gene/Transcriptasun-RA
Protein status:LD33046.pep: gold
Preliminary Size:2491
Sequenced Size:2542

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6814 2001-01-01 Release 2 assignment
CG6814 2002-05-24 Blastp of sequenced clone
CG6814 2003-01-01 Sim4 clustering to Release 3
Mat89Bb 2008-04-29 Release 5.5 accounting
Mat89Bb 2008-08-15 Release 5.9 accounting
Mat89Bb 2008-12-18 5.12 accounting

Clone Sequence Records

LD33046.complete Sequence

2542 bp (2542 high quality bases) assembled on 2002-05-24

GenBank Submission: AY118550

> LD33046.complete
ATTCAACGTTTGCGTTTGTTTGATTTCCCGGCAATTTAAGTTGTCCACGA
GTCCACCATGTTCGAACGCAACCAGAAGACCATCTTTGTGCTGGACCACA
CCCGATACTTTAGCATCGCCAGCGAGGAGTACATCTCGATGGACTTCCTA
AAGGGAAAACCATCTGCAGACGGCGGCGCAACAGGAGCGGCGGGAAATGC
AACCGGCAGCGGTGGATCCCAATTCAGCAAGAGCCTGTGGACATGCGCCT
GCGAATCCTCCATCGAGTACTGCCGCGTGGTCTGGGATCTCTTTCCCGGC
AAAAAGCATGTGCGGTTTATTGTCTCGGACACGGCGGCGCATATCGTGAA
CACCTGGAGGCCCAGCACGCAAAATATGGCGCACGTGATGAACGCAATGC
TAATTGTGGGCGTGCCGTCGCGCAACGTACCCACATCTTCTGACTACTCG
GTAATCCATGGCCTGCGGGCCGCCATCGAAGCGCTGGCGGAGCCCACCGA
TGAGCAGTTGGCGGCAATGGCCGACTTTGGGACCGACGAACTGCCGCGCA
TTCCCAACAAGGGTCGCGTCATCTGCATAACTTCAGCGCGTGACAATACC
AGCATGAAAAGCCTGGAGGACATCTTTAACACCGTGCTGGTGCAGCAGAA
CACCCTAGCAGCTCCGCCCTCCAAGAAGGGACTGGTCATCGACCATTGCC
ACCTAGTTATCCTCAACATTGTGCCGCTGGGCGTTGAATCGTTGGTTACC
AATCGCAGCCTGCTCAAGATATCGCCGCTGCTTGATGTCGAGATCCACAC
AGTCAGTGCCCCGGATATTTCCTATAAGCTGACGCACCTCATACTGAACC
ATTACGACCTAGCTAGTACCACGGTGACTAACATACCCATGAAAGAGGAG
CAGAACGCCAACTCCAGCGCCAACTACGATGTGGAAATCCTGCACAGCCG
AAGGGCCCACTCCATCACCTGTGGCCCAGATTTCAGTCTACCCACGAGCA
TCAAGCAAGGTGCCACATACGAAACAGTGACTCTTAAGTGGTGCACACCG
CGCGGTTGCGGCTCTGCAGATCTACAGCCCTGTCTGGGTCAGTTCCTCGT
GACACCGGTGGACGTCACCTCGCGGCCCAGTTCTTGCTTGATTAACTTTC
TGCTTAACGGACGTTCAGTCTTGCTGGAAATGCCGCGCAAGACCGGCTCA
AAGGCCACCAGCCATATGCTTTCTGCACGCGGTGGCGAGATCTTTGTGCA
CTCCCTGTGCATCACGCGCTCCTGCATGGATGAGGCTCCATCAATTACTG
ATGGCCCCGGAGGACGTGTCTCGGACTATCGCACCGCCGAACTTGGTCAA
CTGATCAAGATGTCGCGCGTGGTTCCGCTCAAGGTTAAGGATCCATCTGC
TCCGCCCTTGACGCGCCGGTTGCCTCGCTACTTCCCCCTGACCACCAGCT
CTTCGATTCTGTTCCATCTACAGCGACACATCAGTTGGCTTCCGCATTTT
CTCCATCTTTTAGTGAAGGAAGACATGGATAAGCAGGACGAGGTGCGGTG
CCAGCAGCACATTCACGAGCTGTACAAAAGCGCCTCGCGTGGCGATGTCC
TACCATTTACCCACACCAATGGAGCAAGACTAAAGCTTTCCAAGGCCAAA
GACCAGTACCGCTTGCTGTACAGGGAACTGGAGCAATTAATTCAACTAAA
TGCCACCACAATGCACCATAAAAATCTGCTGGAAAGCCTACAGAGTTTGC
GAGCCGCATACGGCGATGCCCCGCTGAAGTCGGAACCTGGAGCAAGTCTC
CTGCGCACCTACACGGAATCCCCACTCTCTCCCGAACGGCTGGAGCCCAT
CAGTAGCGTCGGTGCTAGTGGCAGCAGCAGCTCCAATAGCCTTCTCAAGG
CGAGCAAGCGTCGCATGTCTAGTTGTGGGCAAAGATCCCTGCTAGATATT
ATATCCTCAGCAGAGCGAAGCCAGTCCAACAAACGATTGGATTTCTCGGG
ACGCCTTTGCACTCCGTTGGGTCAAGTGGCCAAGCTGTATCCGGATTTTG
GTACCAAGGACAAAGACACAGTTACGACGGGGGCCAGTATTACGCCCAAT
GTTAAGGAGGAATCCGTACGTAGTTAAAATGGCACGGAGAACGCCGAATT
TAAGCTGGGACTGTAGTATATATATATATAAAAGAAACATAATCATTTCC
TTAAACAATGCTTAGTGTACGGCTTAATAGGAATTAATTTGAATGTAAAA
TGAAGTATTTTTCTGAGTTTCGTATAATCGCTTCTTTAAGACTGGGACAA
CATTACTGTGGAAGACGACATTATAATTCCTCTATTTAAGCTGCCTCAAA
TTGGATTAGTTTATGATTCAAACTGTTTGTTTAACTTAAGAAAATATAAA
CATGGGCCAATGAGTTTTTTTTAACTTGTGATTGTGATCTTTGGCACGGT
AATAAAAACGAAAAGTACCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD33046.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Mat89Bb-RA 2619 Mat89Bb-RA 129..2602 1..2474 12370 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12088935..12090562 1..1628 8095 99.8 Plus
chr3R 27901430 chr3R 12090991..12091532 1933..2474 2665 99.4 Plus
chr3R 27901430 chr3R 12090625..12090932 1627..1934 1525 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16264296..16265923 1..1628 8140 100 Plus
3R 32079331 3R 16266352..16266893 1933..2474 2710 100 Plus
3R 32079331 3R 16265986..16266293 1627..1934 1540 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16005127..16006754 1..1628 8140 100 Plus
3R 31820162 3R 16007183..16007724 1933..2474 2710 100 Plus
3R 31820162 3R 16006817..16007124 1627..1934 1540 100 Plus
Blast to na_te.dros performed 2019-03-16 04:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 2512..2672 2310..2147 119 58.6 Minus

LD33046.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:17:32 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12090627..12090932 1629..1934 99 -> Plus
chr3R 12088935..12090562 1..1628 99 -> Plus
chr3R 12090993..12091530 1935..2472 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:41 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
Mat89Bb-RA 1..2070 58..2127 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:37:39 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
asun-RA 1..2070 58..2127 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:24:12 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
asun-RA 1..2070 58..2127 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:29:17 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
Mat89Bb-RA 1..2070 58..2127 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:34:00 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
asun-RA 1..2070 58..2127 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:10:14 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
Mat89Bb-RA 129..2600 1..2472 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:37:39 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
asun-RA 129..2600 1..2472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:12 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
asun-RA 26..2497 1..2472 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:29:17 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
Mat89Bb-RA 129..2600 1..2472 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:34:00 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
asun-RA 26..2497 1..2472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:32 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16264296..16265923 1..1628 100 -> Plus
3R 16265988..16266293 1629..1934 100 -> Plus
3R 16266354..16266891 1935..2472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:32 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16264296..16265923 1..1628 100 -> Plus
3R 16265988..16266293 1629..1934 100 -> Plus
3R 16266354..16266891 1935..2472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:32 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16264296..16265923 1..1628 100 -> Plus
3R 16265988..16266293 1629..1934 100 -> Plus
3R 16266354..16266891 1935..2472 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:12 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12090018..12091645 1..1628 100 -> Plus
arm_3R 12091710..12092015 1629..1934 100 -> Plus
arm_3R 12092076..12092613 1935..2472 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:01:54 Download gff for LD33046.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16005127..16006754 1..1628 100 -> Plus
3R 16006819..16007124 1629..1934 100 -> Plus
3R 16007185..16007722 1935..2472 100   Plus

LD33046.pep Sequence

Translation from 57 to 2126

> LD33046.pep
MFERNQKTIFVLDHTRYFSIASEEYISMDFLKGKPSADGGATGAAGNATG
SGGSQFSKSLWTCACESSIEYCRVVWDLFPGKKHVRFIVSDTAAHIVNTW
RPSTQNMAHVMNAMLIVGVPSRNVPTSSDYSVIHGLRAAIEALAEPTDEQ
LAAMADFGTDELPRIPNKGRVICITSARDNTSMKSLEDIFNTVLVQQNTL
AAPPSKKGLVIDHCHLVILNIVPLGVESLVTNRSLLKISPLLDVEIHTVS
APDISYKLTHLILNHYDLASTTVTNIPMKEEQNANSSANYDVEILHSRRA
HSITCGPDFSLPTSIKQGATYETVTLKWCTPRGCGSADLQPCLGQFLVTP
VDVTSRPSSCLINFLLNGRSVLLEMPRKTGSKATSHMLSARGGEIFVHSL
CITRSCMDEAPSITDGPGGRVSDYRTAELGQLIKMSRVVPLKVKDPSAPP
LTRRLPRYFPLTTSSSILFHLQRHISWLPHFLHLLVKEDMDKQDEVRCQQ
HIHELYKSASRGDVLPFTHTNGARLKLSKAKDQYRLLYRELEQLIQLNAT
TMHHKNLLESLQSLRAAYGDAPLKSEPGASLLRTYTESPLSPERLEPISS
VGASGSSSSNSLLKASKRRMSSCGQRSLLDIISSAERSQSNKRLDFSGRL
CTPLGQVAKLYPDFGTKDKDTVTTGASITPNVKEESVRS*

LD33046.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16409-PA 682 GF16409-PA 1..682 1..689 3126 86.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16989-PA 689 GG16989-PA 1..689 1..689 3585 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19540-PA 678 GH19540-PA 1..678 1..689 2845 79.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
asun-PA 689 CG6814-PA 1..689 1..689 3552 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22939-PA 679 GI22939-PA 1..679 1..689 2837 78.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21594-PA 674 GL21594-PA 1..658 1..670 3037 86.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19879-PA 674 GA19879-PA 1..672 1..680 3042 84.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15141-PA 689 GM15141-PA 1..689 1..689 3623 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19084-PA 689 GD19084-PA 1..689 1..689 3631 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23719-PA 681 GJ23719-PA 1..681 1..689 2866 79.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13769-PA 677 GK13769-PA 1..676 1..688 2949 82.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24382-PA 689 GE24382-PA 1..689 1..689 3606 97.2 Plus

LD33046.hyp Sequence

Translation from 57 to 2126

> LD33046.hyp
MFERNQKTIFVLDHTRYFSIASEEYISMDFLKGKPSADGGATGAAGNATG
SGGSQFSKSLWTCACESSIEYCRVVWDLFPGKKHVRFIVSDTAAHIVNTW
RPSTQNMAHVMNAMLIVGVPSRNVPTSSDYSVIHGLRAAIEALAEPTDEQ
LAAMADFGTDELPRIPNKGRVICITSARDNTSMKSLEDIFNTVLVQQNTL
AAPPSKKGLVIDHCHLVILNIVPLGVESLVTNRSLLKISPLLDVEIHTVS
APDISYKLTHLILNHYDLASTTVTNIPMKEEQNANSSANYDVEILHSRRA
HSITCGPDFSLPTSIKQGATYETVTLKWCTPRGCGSADLQPCLGQFLVTP
VDVTSRPSSCLINFLLNGRSVLLEMPRKTGSKATSHMLSARGGEIFVHSL
CITRSCMDEAPSITDGPGGRVSDYRTAELGQLIKMSRVVPLKVKDPSAPP
LTRRLPRYFPLTTSSSILFHLQRHISWLPHFLHLLVKEDMDKQDEVRCQQ
HIHELYKSASRGDVLPFTHTNGARLKLSKAKDQYRLLYRELEQLIQLNAT
TMHHKNLLESLQSLRAAYGDAPLKSEPGASLLRTYTESPLSPERLEPISS
VGASGSSSSNSLLKASKRRMSSCGQRSLLDIISSAERSQSNKRLDFSGRL
CTPLGQVAKLYPDFGTKDKDTVTTGASITPNVKEESVRS*

LD33046.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
asun-PA 689 CG6814-PA 1..689 1..689 3552 100 Plus