Clone LD33051 Report

Search the DGRC for LD33051

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:330
Well:51
Vector:pOT2
Associated Gene/TranscriptMys45A-RA
Protein status:LD33051.pep: gold
Preliminary Size:2596
Sequenced Size:2390

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8070 2001-01-01 Release 2 assignment
CG8070 2001-12-12 Blastp of sequenced clone
Mys45A 2008-04-29 Release 5.5 accounting
Mys45A 2008-08-15 Release 5.9 accounting
Mys45A 2008-12-18 5.12 accounting

Clone Sequence Records

LD33051.complete Sequence

2390 bp (2390 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070560

> LD33051.complete
ACTTTGCGAACCAAACAGAACGTGGTTGAAAATAATCGTAGTTTTTATAC
TGTTATAACGGCTCACCATGGTGCGGCCCAACAACAACCAGCTGCCGGAG
AACCTTCCGCAGTTGCAGAACCTCATCAAGCGGGATCCGGAGTCGTATAG
CGATGAGTTCCACATCCAGTACCAACACTTTCTTAGCTTGCTGGAAGTTT
TTGCGCTGAATCCCAGCGAAGAAAACAAATCCCTGGATGACATCGTCATG
TTTGTCGCCCAGGTGGCTCAGTGCTATCCGGCCGTCTGCGAGGAGTTCCC
AAAGCGTCTTTCCGATTTGCTGAAGAACTATGCCACCGTTCTGGACCCGG
CTATGCGTAACTGCTTTGTGAAAGCTCTAATCCTGCTGAGAAACAAGAAC
CTAGTGCCCGCGCTGGACATACTGGAACTGTTCTTTCAGTTGCTGCGGTG
TCCGGACAAGAATCTGCGCACCTTTCTGCAAACGCACATTGTGACGGACA
TCAAGAATATGAATGCCAAGCACAAGGACATGAAGCTCAATTCGAGCCTG
CAGGCATTCATGTACTCCATGCTGAAGGATGCCAATCCGAAGGCAGCCAA
GATGTCCGCTGATATCATGATCGAGCTGTACAAGAAAAACATATGGAATG
ATTCTAAGACGGTGAATGTCATAGCCACTGTGGGGTGCTTCTCTAAGGTA
ACAAAAGTACTGGTCACCTCGCTCAAGTTCTTCCTCGGCCACGACGAAGA
GGATGAAGAGGAGGACACTGACAGCGAGAACGAGGTGGACCTTAAGGGTG
CTCTGATGGCCAATCGAGTCAATAAGAAAACCAAGAAGCGGACCAAGCAA
CTGGCGCAGATCAAAAAGCAAGCGGTGAAGGCCCAGAAAAAGAAAAAGAA
CGCTCCAGCCTTTAACTTCTCAGGCATTCACCTGGTGCACAATCCGCAGG
GAATGGCCGAAGGGCTCTTTAAGCAGCTGCAGGCCACCAACGAGCGATTT
GAGGTGAAGCTAATGCATTTGGACGTTATTTCCCGGCTGATCGGCATCCA
CGACCTCTTCCTTTTCGGTTTCTATCCGTACATAACACGCTTTCTGCAAC
CCCACCAACGCCAGGTGACACGTGTGCTCCAGTTTGCCGCCCAAGCGTCC
CACGAACTGGTTCCCGGAGACATCATCGAGCCTATCCTAAAGACGATCGC
CAACAACTTCATTACTGAACGCAACTCCAGCGATGTGATGGCCATAGGTC
TGAATGCGACGCGTGAGATTTGCATGCGATGTCCCCTGGCCATGGGCGAG
GATTTGCTGCAGGACCTGGCAATGTACAAAACGTACAAGGAGAAGTCGGT
GATGATGGCGGCACGGTCGCTAATCACACTCTACAGGGAACAGCTGCCTG
CCCTGTTGCACAAAAAGGACCGAGGCAGGCAGACAGAGGCCCAGGCCGAA
CGAAAGGTTCGAGCCTACGGAGAGCGCGAAGTCCACGACACTGTCTTGGG
TGCAGAGGCTCTGCTCAAGGACTCTAAGACTATTGACATAGAGAGCGAAG
ACGATACGGACTCAAACGATGGTGAATGGGTTAACGTGGCGCACAGTGAT
GGTGAGGGTGGTGGAGCGGACGATGATGAAGAAGACGAAGATGAGGATGA
GGACGATGATGACGAAGACGAAGACGAAGAGAACAGTAATGACGAGGAGA
ATGAGGATGAAGATAATTCCGACGAAGGCGTGGAAAGTGGCGAAGAGTCC
GCAAAGGCCAAGAAGGAAAAGAAAGATATGAGGATCCTTAACCAAAAGGA
GGCTGCACAGGAACTGGCTCTTACTCGCATATTCACGGACGAAGATTTCA
AGCGCATCAACGCGGCTAATCTTAAGAAGACCGTAACCAGTGCCCGCAAG
AGACCACTTGAACAGGATCGCGCCGAGTTCGTCAAGCTGAACAGCATCGA
GATGATCTACAAGAAGCGCAAGCACGACAAGGAGTCGCGGCTGGAGACTG
TGCAGGCGGGCCGGCAGGATCGCGAGCGCTTTGGCTGGAAGGATGGGCGC
GTGAACGAGCACTGTTCCAAGACGAACCGCGAGAAGCGCAAAACCAAGAA
CTTTGGCATGCTGCGACACAAGGCTCGCTCCAAGGTTAAGAAGAGCTTCA
AGGACAAGCAGCAGGCGCTGAGAAAACATCTGCTGCATCAGAAAAAGATG
AAGTAGTACCTTCTTGCGTTTCAAACCTCGTAGTGCTTTAAATGAATACC
AATATAAGATATATAATTCTAACCAATTGATTGTATAAAGGGTAGTTGGT
AGAGTTATCTGATTTATTTCAATTCATATAGACTTTGTACGGTTGCCTAT
TCATTAAACTATTTTAAAAAATAAAAAAAAAAAAAAAAAA

LD33051.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Mys45A-RA 2450 Mys45A-RA 75..2446 1..2372 11860 100 Plus
Mys45A.a 2339 Mys45A.a 1076..2335 1113..2372 6300 100 Plus
Mys45A.a 2339 Mys45A.a 75..1081 1..1007 5035 100 Plus
tsu-RA 925 tsu-RA 813..925 2372..2260 565 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4999083..5000911 2372..544 9115 99.9 Minus
chr2R 21145070 chr2R 5000973..5001516 544..1 2720 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9111505..9113333 2372..544 9145 100 Minus
2R 25286936 2R 9113395..9113938 544..1 2720 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9112704..9114532 2372..544 9145 100 Minus
2R 25260384 2R 9114594..9115137 544..1 2720 100 Minus
Blast to na_te.dros performed 2019-03-16 10:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 5171..5222 860..910 121 77.4 Plus

LD33051.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:52:15 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4999083..4999737 1718..2372 99 == Minus
chr2R 4999859..5000910 545..1596 100 <- Minus
chr2R 5000973..5001516 1..544 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:42 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
Mys45A-RA 1..2139 68..2206 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:08 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
Mys45A-RA 1..2139 68..2206 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:29:52 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
Mys45A-RA 1..2139 68..2206 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:15 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
Mys45A-RA 1..2139 68..2206 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:43 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
Mys45A-RA 1..2139 68..2206 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:52:25 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
Mys45A-RA 16..2387 1..2372 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:07 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
Mys45A-RA 16..2387 1..2372 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:29:52 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
Mys45A-RA 14..2385 1..2372 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:15 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
Mys45A-RA 16..2387 1..2372 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:43 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
Mys45A-RA 14..2385 1..2372 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:15 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9111505..9113332 545..2372 100 <- Minus
2R 9113395..9113938 1..544 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:15 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9111505..9113332 545..2372 100 <- Minus
2R 9113395..9113938 1..544 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:15 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9111505..9113332 545..2372 100 <- Minus
2R 9113395..9113938 1..544 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:29:52 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4999010..5000837 545..2372 100 <- Minus
arm_2R 5000900..5001443 1..544 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:21:37 Download gff for LD33051.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9112704..9114531 545..2372 100 <- Minus
2R 9114594..9115137 1..544 100   Minus

LD33051.pep Sequence

Translation from 67 to 2205

> LD33051.pep
MVRPNNNQLPENLPQLQNLIKRDPESYSDEFHIQYQHFLSLLEVFALNPS
EENKSLDDIVMFVAQVAQCYPAVCEEFPKRLSDLLKNYATVLDPAMRNCF
VKALILLRNKNLVPALDILELFFQLLRCPDKNLRTFLQTHIVTDIKNMNA
KHKDMKLNSSLQAFMYSMLKDANPKAAKMSADIMIELYKKNIWNDSKTVN
VIATVGCFSKVTKVLVTSLKFFLGHDEEDEEEDTDSENEVDLKGALMANR
VNKKTKKRTKQLAQIKKQAVKAQKKKKNAPAFNFSGIHLVHNPQGMAEGL
FKQLQATNERFEVKLMHLDVISRLIGIHDLFLFGFYPYITRFLQPHQRQV
TRVLQFAAQASHELVPGDIIEPILKTIANNFITERNSSDVMAIGLNATRE
ICMRCPLAMGEDLLQDLAMYKTYKEKSVMMAARSLITLYREQLPALLHKK
DRGRQTEAQAERKVRAYGEREVHDTVLGAEALLKDSKTIDIESEDDTDSN
DGEWVNVAHSDGEGGGADDDEEDEDEDEDDDDEDEDEENSNDEENEDEDN
SDEGVESGEESAKAKKEKKDMRILNQKEAAQELALTRIFTDEDFKRINAA
NLKKTVTSARKRPLEQDRAEFVKLNSIEMIYKKRKHDKESRLETVQAGRQ
DRERFGWKDGRVNEHCSKTNREKRKTKNFGMLRHKARSKVKKSFKDKQQA
LRKHLLHQKKMK*

LD33051.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12953-PA 714 GF12953-PA 1..714 1..712 3319 92.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10582-PA 710 GG10582-PA 1..710 1..712 3738 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22017-PA 731 GH22017-PA 1..731 1..712 2944 83.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Mys45A-PA 712 CG8070-PA 1..712 1..712 3658 100 Plus
l(2)01289-PG 1191 CG9432-PG 760..843 490..570 168 35.7 Plus
l(2)01289-PM 1193 CG9432-PM 760..843 490..570 168 35.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19723-PA 720 GI19723-PA 1..720 1..712 2991 85.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16850-PA 705 GL16850-PA 1..705 1..712 3002 88.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20803-PA 716 GA20803-PA 1..716 1..712 3085 90.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20630-PA 710 GM20630-PA 1..710 1..712 3759 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10103-PA 712 GD10103-PA 1..712 1..712 3776 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17587-PA 718 GJ17587-PA 1..718 1..712 3041 86.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23262-PA 718 GK23262-PA 1..718 1..712 3128 87.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22554-PA 711 GE22554-PA 1..711 1..712 3698 96.8 Plus

LD33051.hyp Sequence

Translation from 67 to 2205

> LD33051.hyp
MVRPNNNQLPENLPQLQNLIKRDPESYSDEFHIQYQHFLSLLEVFALNPS
EENKSLDDIVMFVAQVAQCYPAVCEEFPKRLSDLLKNYATVLDPAMRNCF
VKALILLRNKNLVPALDILELFFQLLRCPDKNLRTFLQTHIVTDIKNMNA
KHKDMKLNSSLQAFMYSMLKDANPKAAKMSADIMIELYKKNIWNDSKTVN
VIATVGCFSKVTKVLVTSLKFFLGHDEEDEEEDTDSENEVDLKGALMANR
VNKKTKKRTKQLAQIKKQAVKAQKKKKNAPAFNFSGIHLVHNPQGMAEGL
FKQLQATNERFEVKLMHLDVISRLIGIHDLFLFGFYPYITRFLQPHQRQV
TRVLQFAAQASHELVPGDIIEPILKTIANNFITERNSSDVMAIGLNATRE
ICMRCPLAMGEDLLQDLAMYKTYKEKSVMMAARSLITLYREQLPALLHKK
DRGRQTEAQAERKVRAYGEREVHDTVLGAEALLKDSKTIDIESEDDTDSN
DGEWVNVAHSDGEGGGADDDEEDEDEDEDDDDEDEDEENSNDEENEDEDN
SDEGVESGEESAKAKKEKKDMRILNQKEAAQELALTRIFTDEDFKRINAA
NLKKTVTSARKRPLEQDRAEFVKLNSIEMIYKKRKHDKESRLETVQAGRQ
DRERFGWKDGRVNEHCSKTNREKRKTKNFGMLRHKARSKVKKSFKDKQQA
LRKHLLHQKKMK*

LD33051.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Mys45A-PA 712 CG8070-PA 1..712 1..712 3658 100 Plus
l(2)01289-PG 1191 CG9432-PG 760..843 490..570 168 35.7 Plus
l(2)01289-PM 1193 CG9432-PM 760..843 490..570 168 35.7 Plus