Clone LD33081 Report

Search the DGRC for LD33081

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:330
Well:81
Vector:pOT2
Associated Gene/Transcriptmei-S332-RA
Protein status:LD33081.pep: gold
Preliminary Size:1620
Sequenced Size:1574

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5303 2001-01-01 Release 2 assignment
CG5303 2001-09-19 Blastp of sequenced clone
CG5303 2003-01-01 Sim4 clustering to Release 3
mei-S332 2008-04-29 Release 5.5 accounting
mei-S332 2008-08-15 Release 5.9 accounting
mei-S332 2008-12-18 5.12 accounting

Clone Sequence Records

LD33081.complete Sequence

1574 bp (1574 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058633

> LD33081.complete
TCGTCTGTCTGGATTTTGTGTATGGAATAAGTAGATCAGAAGAAGCAAAT
GGGATCCAAAGTGGAGCAGCAGTACAAGCTGCTGAATGCGGAGCTAATGG
ACCAAGTGCAGAAGCAGCGCTTGGAGATCGGCGAGTACAGGAAGCGGGTG
ATATCTTTGGAGCGAGAGATCATGGACATTCGGGAGGAGCACGTCCTGCA
AAACCATCGCCAGCGCATGGAGAACATCAGTATCGTACGCAGCCTGATGC
TGAGCCTGAACGTGGACTCCGATTCCCTGGCAGTGCGTCAGGAGCCCGCT
CCCGCAGCTCAGATAAACAGACCAAGCGGCCCGCGTCGCAGCTCCAGGGA
AATCTGCAAGGACATGCGACGGACGTGTGCGTTGGCCCGCACCACCAGAC
CAATCTCGCCAAGAAGATCTTCCTCAGTGACCAGTACTGTATCGTCCACT
AGTCGCCGCTCCAGCGCAGAAGTGCAGTCCGAGGTGGTGACCACTAGGAT
ACCAGAGGATAGAAGAGCCAACAAGCCTACACCACCGCCACGAAGACCAG
CGGAATTAGTGTTTGATGAGGACGACTCGGACGATGATTTCGACGAAGCA
GTAAGCCCCGTGGAGGAGACACAGACTGAGCAAAATGAAGAGAACAATCG
TCTGTTTAGCATTATAGAGGAAAATGGCAGTGAAGGGGAGTCCACAGACT
CGTCATCATCATGCGAGGCCATCTATTGCGACACAACGTTTGAAAGTAGT
CCGCCAAACGCCCAAGTCACCGTCACGCCCAGTGGACGGGCTCTGCGGGA
AGTGGACACCAATATCCCTGTAGCAGTGTCCCTCAGTCGGGGAAAAGAGA
CTGGGAAGGGATCATGGTTGGCTATTTCCGTAGCTGTGGAAGATTCTCCA
CAGGAGCCAAGCATACAGTGCCCACGACTGGCAGTCACCAGGCCTAGTCA
ATCGTCTGGAATATTTCCTGATGTCAACGGATTAACGCCGCGAAGAAGCC
TGTTCAATGGGATAGGCAAAATGGCCGGAAGCACCAGCACTCCGAAATCC
TTTCTCGTCGAGGAAATGCCATCTATAAGAACTAGAAGCCGAACTGCGGC
TAATAAGAAATCAGAAAATACGGATATGTCTAGTTCTTTCTGCAACAACA
GCGCAAGGCCGAGTAGAAGCTGCAGGCCCACCAGTTTGGTGGAGCCAAGT
CTGAAGAACAAGTTGCGCAATGGCTCGAAAGGCAAGGCCAAGGCCAAAAA
GTAGATAGACGAATTTTTTAATAGGCTTTAATGTTGTTTCTGTAATTTCA
TTGGTTTTCAATACCACTTTTTACCATTTTTAATATGAATAATATTTTTA
AATCGTCAGGCCCTGATAAGTTTAATTTATAGACTAAAAGCTGACATCGG
ATTACTTTTTGCCTGCAATAGAGGGCATATTCAGTTCATCCAGCGCTATC
GGAAGGAAGACACTCCATCATCATCATCACCCAAAGATGCCAATAGGAAT
TTAAAAGTACGTCTAATTTTTACATGTTCATTTGTGAATAAAACAACGTT
TCAATTAAAAAAAAAAAAAAAAAA

LD33081.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-RA 1703 mei-S332-RA 148..1703 1..1556 7780 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18009973..18011005 524..1556 5165 100 Plus
chr2R 21145070 chr2R 18009389..18009913 1..525 2625 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22123534..22124568 524..1558 5175 100 Plus
2R 25286936 2R 22122950..22123474 1..525 2625 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22124733..22125767 524..1558 5175 100 Plus
2R 25260384 2R 22124149..22124673 1..525 2625 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:16:46 has no hits.

LD33081.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:17:38 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18009389..18009913 1..525 100 -> Plus
chr2R 18009975..18011005 526..1556 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:45 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 1..1206 49..1254 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:03 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 1..1206 49..1254 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:24:24 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 1..1206 49..1254 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:29 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 1..1206 49..1254 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:34:12 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 1..1206 49..1254 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:48 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 148..1703 1..1556 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:02 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 148..1703 1..1556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:24 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RB 39..1594 1..1556 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:29 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 148..1703 1..1556 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:34:12 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RB 39..1594 1..1556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:38 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22122950..22123474 1..525 100 -> Plus
2R 22123536..22124566 526..1556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:38 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22122950..22123474 1..525 100 -> Plus
2R 22123536..22124566 526..1556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:17:38 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22122950..22123474 1..525 100 -> Plus
2R 22123536..22124566 526..1556 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:24 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18010455..18010979 1..525 100 -> Plus
arm_2R 18011041..18012071 526..1556 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:08:02 Download gff for LD33081.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22124149..22124673 1..525 100 -> Plus
2R 22124735..22125765 526..1556 100   Plus

LD33081.pep Sequence

Translation from 48 to 1253

> LD33081.pep
MGSKVEQQYKLLNAELMDQVQKQRLEIGEYRKRVISLEREIMDIREEHVL
QNHRQRMENISIVRSLMLSLNVDSDSLAVRQEPAPAAQINRPSGPRRSSR
EICKDMRRTCALARTTRPISPRRSSSVTSTVSSTSRRSSAEVQSEVVTTR
IPEDRRANKPTPPPRRPAELVFDEDDSDDDFDEAVSPVEETQTEQNEENN
RLFSIIEENGSEGESTDSSSSCEAIYCDTTFESSPPNAQVTVTPSGRALR
EVDTNIPVAVSLSRGKETGKGSWLAISVAVEDSPQEPSIQCPRLAVTRPS
QSSGIFPDVNGLTPRRSLFNGIGKMAGSTSTPKSFLVEEMPSIRTRSRTA
ANKKSENTDMSSSFCNNSARPSRSCRPTSLVEPSLKNKLRNGSKGKAKAK
K*

LD33081.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13289-PA 382 GF13289-PA 2..367 7..393 239 28.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22163-PA 403 GG22163-PA 1..403 1..401 1514 83.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-PB 401 CG5303-PB 1..401 1..401 2020 100 Plus
mei-S332-PA 401 CG5303-PA 1..401 1..401 2020 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18821-PA 419 GI18821-PA 1..419 17..396 167 26.3 Plus
Dmoj\GI20753-PA 179 GI20753-PA 1..137 5..141 151 33.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11778-PA 401 GL11778-PA 1..401 1..401 479 36.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18794-PA 401 GA18794-PA 1..401 1..401 476 35.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15884-PA 401 GM15884-PA 1..391 1..391 1715 95.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11646-PA 401 GD11646-PA 1..401 1..401 2014 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21848-PA 435 GJ21848-PA 2..435 7..396 266 30.5 Plus
Dvir\GJ20489-PA 434 GJ20489-PA 2..434 7..396 246 29.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15937-PA 399 GK15937-PA 1..390 5..401 279 30.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12243-PA 406 GE12243-PA 1..406 1..401 1662 83.3 Plus

LD33081.hyp Sequence

Translation from 48 to 1253

> LD33081.hyp
MGSKVEQQYKLLNAELMDQVQKQRLEIGEYRKRVISLEREIMDIREEHVL
QNHRQRMENISIVRSLMLSLNVDSDSLAVRQEPAPAAQINRPSGPRRSSR
EICKDMRRTCALARTTRPISPRRSSSVTSTVSSTSRRSSAEVQSEVVTTR
IPEDRRANKPTPPPRRPAELVFDEDDSDDDFDEAVSPVEETQTEQNEENN
RLFSIIEENGSEGESTDSSSSCEAIYCDTTFESSPPNAQVTVTPSGRALR
EVDTNIPVAVSLSRGKETGKGSWLAISVAVEDSPQEPSIQCPRLAVTRPS
QSSGIFPDVNGLTPRRSLFNGIGKMAGSTSTPKSFLVEEMPSIRTRSRTA
ANKKSENTDMSSSFCNNSARPSRSCRPTSLVEPSLKNKLRNGSKGKAKAK
K*

LD33081.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-PB 401 CG5303-PB 1..401 1..401 2020 100 Plus
mei-S332-PA 401 CG5303-PA 1..401 1..401 2020 100 Plus