Clone LD33138 Report

Search the DGRC for LD33138

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:331
Well:38
Vector:pOT2
Associated Gene/TranscriptCG8004-RA
Protein status:LD33138.pep: gold
Preliminary Size:1383
Sequenced Size:1240

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8004 2001-01-01 Release 2 assignment
CG8004 2002-06-06 Blastp of sequenced clone
CG8004 2003-01-01 Sim4 clustering to Release 3
CG8004 2008-04-29 Release 5.5 accounting
CG8004 2008-08-15 Release 5.9 accounting
CG8004 2008-12-18 5.12 accounting

Clone Sequence Records

LD33138.complete Sequence

1240 bp (1240 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119608

> LD33138.complete
CGATTTCGGTGTGCAAGTTGAAAAACACAATTTACTCCGTTAATTTACAA
TGACATCCCAGTACCTGAGCCAGCTAATAACGGCCGACAAATTGTCCGCC
GAGCCCTGGCCCGAAGACGCCACCCTCTACCAGCCGTATGAAGCGGAACA
GATCCTACTGCCGGAAAACGCCAGTTGCCTTGCTGTGAAGGCTTACCTGA
AGATGTGCAACCTCCCCTTTTTGATTCGGTCCTGTGCCAACGCGGAGCAC
ATGTCGCCGGGCGGCAGGATGACCAAGTTGCCCTTCATCCGCGCAGGAGC
ATTCATCTTTGCCGAATTCGAGCCGATCGTGAACTTTGTGGAGCAGAAGG
AACTGGCCATTGGCAGCTGGCAGGACGAGGACGAGAAGGCCGACATGCGC
ACCTATGTGTCGCTGGTGGAGAACATCTTCACCATGGCTGAGCTGTACAT
TAGCTTCAAGAACGAACGCGTCTACAAAGAGGTCACAGCGCCCAGGAACG
GAGTCGTTTTTCCCTGGCCCCTCAATCACATGCAGAACTATGGAAAGCGG
CGGAACGCGCTGCGTCTGTTGAAGGTCTATCAGTGGGACGACCTGGACAT
CGATAGCGTCATTGACAAGGTGGCCAAGTGCTGTGAGACGCTCGAATACA
AGCTGAAAGAGTCGCCGGAAACGCCATTCTTCTACGGCGATCAGCCCTGC
GAACTGGACGCCATCGCCTTCGGCCACCTCTTCAGCATTCTGACCACCAC
GCTGCCGAACATGGCGCTGGCCCAAACGGTGCAGAAGTTCCAGCACTTGG
TCGAGTTCTGTCGCTTCGTCGATGAGAAGTACTTTCAGACGAGGTGCCTA
CCAAATTAGTTATACGTAGTCGTTGCCTTAAATGCTTATCAATTAAGTTG
CTCTTGTCCTTTCTTTTTAACCGCTTATATATGCAATTCTAAATGCCCTT
AAAACAAATCGTCGCCGTAAGTCACAATTATTTTGCTACTAGCATTTAAA
AAAAAAAGTTGTTCTAGTGATTTTGCTGCCATTAATGTCCAAAAATCCAT
GTGAATATCATTTGCACAAGTGACTCAATCTGCAAGTTTGTTTAAATGGA
ATTCTAAAATACTTCTAACGATCTTTACTTCATTTATTTTGCAGCAAATA
ACTTTTCTGCTAATAAAATTGTGTAAGTATTTGCTATAATACATCAAATA
AATTGTTTTCTTAGCAAACCAAAAAAAAAAAAAAAAAAAA

LD33138.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-RA 1322 CG8004-RA 92..1322 1..1231 6155 100 Plus
CG8004.a 1021 CG8004.a 92..934 1..843 4215 100 Plus
CG8004.a 1021 CG8004.a 933..1021 1143..1231 445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19916524..19917613 1220..131 5450 100 Minus
chr3L 24539361 chr3L 19917684..19917816 133..1 650 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19927183..19928283 1231..131 5505 100 Minus
3L 28110227 3L 19928354..19928486 133..1 665 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19920283..19921383 1231..131 5505 100 Minus
3L 28103327 3L 19921454..19921586 133..1 665 100 Minus
Blast to na_te.dros performed 2019-03-15 16:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 4114..4186 92..19 124 64.9 Minus

LD33138.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:04:35 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19916524..19917610 134..1220 100 <- Minus
chr3L 19917684..19917816 1..133 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:51 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 1..810 50..859 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:30 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 1..810 50..859 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:50:39 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 1..810 50..859 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:41 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 1..810 50..859 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:24:52 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 1..810 50..859 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:00:16 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 1..1220 1..1220 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:30 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 1..1220 1..1220 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:39 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 23..1242 1..1220 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:41 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 1..1220 1..1220 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:24:52 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 23..1242 1..1220 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:35 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19927194..19928280 134..1220 100 <- Minus
3L 19928354..19928486 1..133 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:35 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19927194..19928280 134..1220 100 <- Minus
3L 19928354..19928486 1..133 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:35 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19927194..19928280 134..1220 100 <- Minus
3L 19928354..19928486 1..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:39 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19920294..19921380 134..1220 100 <- Minus
arm_3L 19921454..19921586 1..133 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:23 Download gff for LD33138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19920294..19921380 134..1220 100 <- Minus
3L 19921454..19921586 1..133 100   Minus

LD33138.hyp Sequence

Translation from 49 to 858

> LD33138.hyp
MTSQYLSQLITADKLSAEPWPEDATLYQPYEAEQILLPENASCLAVKAYL
KMCNLPFLIRSCANAEHMSPGGRMTKLPFIRAGAFIFAEFEPIVNFVEQK
ELAIGSWQDEDEKADMRTYVSLVENIFTMAELYISFKNERVYKEVTAPRN
GVVFPWPLNHMQNYGKRRNALRLLKVYQWDDLDIDSVIDKVAKCCETLEY
KLKESPETPFFYGDQPCELDAIAFGHLFSILTTTLPNMALAQTVQKFQHL
VEFCRFVDEKYFQTRCLPN*

LD33138.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-PA 269 CG8004-PA 1..269 1..269 1429 100 Plus
CG5662-PB 292 CG5662-PB 11..275 6..267 622 46.8 Plus
CG5662-PA 292 CG5662-PA 11..275 6..267 622 46.8 Plus

LD33138.pep Sequence

Translation from 49 to 858

> LD33138.pep
MTSQYLSQLITADKLSAEPWPEDATLYQPYEAEQILLPENASCLAVKAYL
KMCNLPFLIRSCANAEHMSPGGRMTKLPFIRAGAFIFAEFEPIVNFVEQK
ELAIGSWQDEDEKADMRTYVSLVENIFTMAELYISFKNERVYKEVTAPRN
GVVFPWPLNHMQNYGKRRNALRLLKVYQWDDLDIDSVIDKVAKCCETLEY
KLKESPETPFFYGDQPCELDAIAFGHLFSILTTTLPNMALAQTVQKFQHL
VEFCRFVDEKYFQTRCLPN*

LD33138.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10837-PA 269 GF10837-PA 1..267 1..267 1372 94.4 Plus
Dana\GF21225-PA 297 GF21225-PA 20..271 20..267 540 45.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13360-PA 269 GG13360-PA 1..269 1..269 1391 95.5 Plus
Dere\GG17868-PA 287 GG17868-PA 21..275 16..267 663 49 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14498-PA 270 GH14498-PA 3..268 2..267 1311 90.2 Plus
Dgri\GH19302-PA 324 GH19302-PA 10..246 30..266 156 24.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-PA 269 CG8004-PA 1..269 1..269 1429 100 Plus
CG5662-PB 292 CG5662-PB 11..275 6..267 622 46.8 Plus
CG5662-PA 292 CG5662-PA 11..275 6..267 622 46.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13657-PA 270 GI13657-PA 3..268 2..267 1306 89.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22904-PA 268 GL22904-PA 1..267 1..267 1324 90.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23333-PA 268 GA23333-PA 1..267 1..267 1328 90.6 Plus
Dpse\GA23925-PA 111 GA23925-PA 1..110 158..267 563 90.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15407-PA 269 GM15407-PA 1..269 1..269 1410 97.4 Plus
Dsec\GM12065-PA 235 GM12065-PA 11..225 6..217 532 49.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12238-PA 269 GD12238-PA 1..269 1..269 1413 97.8 Plus
Dsim\GD17197-PA 287 GD17197-PA 11..275 6..267 660 47.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13992-PA 270 GJ13992-PA 4..268 3..267 1297 89.1 Plus
Dvir\GJ15694-PA 292 GJ15694-PA 31..288 19..267 631 46.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17494-PA 271 GK17494-PA 1..265 1..265 1249 85.3 Plus
Dwil\GK11255-PA 327 GK11255-PA 6..246 24..264 148 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22453-PA 269 GE22453-PA 1..269 1..269 1417 97.4 Plus
Dyak\GE17171-PA 287 GE17171-PA 21..275 16..267 678 49.8 Plus