Clone LD33178 Report

Search the DGRC for LD33178

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:331
Well:78
Vector:pOT2
Associated Gene/TranscriptCG31301-RA
Protein status:LD33178.pep: gold
Preliminary Size:1573
Sequenced Size:1512

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12258 2001-01-01 Release 2 assignment
CG31301 2001-07-04 Blastp of sequenced clone
CG31301 2003-01-01 Sim4 clustering to Release 3
CG31301 2008-04-29 Release 5.5 accounting
CG31301 2008-08-15 Release 5.9 accounting
CG31301 2008-12-18 5.12 accounting

Clone Sequence Records

LD33178.complete Sequence

1512 bp (1512 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051823

> LD33178.complete
CAGCAATCAAAAAACAAGCGTGCCTGTGCTCATTTTATTTGACAAGTTGA
ACGCTATTTATTTTCCCTGTAAAGATGTCCGTTCAACAATCCAAGCCAAA
GCAGAAGAAAGTCAAAGTTAAAAAACAGGATGATGCCGGCTATGGATCCG
GGGAATTTTCCTTGGACTGGGATGTAGACAGCTACAAGACGGAATACGAA
AGTGATGAGCACTGGGATCTGCGACGCAGCTTCATGCTGGCCCACAAGGA
TCGTTTTGAGGAGGACCGGCTGGTGTGCCTGGCCCAAACGTTCGTCAACA
TGGAGTTCATGGGCTGCAAGTATCCAAGCGCGACGATGCTTTTGGTGGCC
GAGTTGTCCAAGGAAATCGCAGCGGATTTCCGTCAGAAACGGGAACAGCG
CCTGAAGAGAACATTTGTCTCGGCGTCGGATGCGGCGGAGCAGCGCGCCA
AAGGGCGCCGGGCTCCACCCCTTCCCTCGACGAGCTCCCCAGAGGATAGC
TCACACATAAAACGCCAGTGTTTTGGCGGCGGAGATCCAGTCGATCTCTA
TCAAGATCTGCGTTTCGGTCGGCTCATTGTGTACTTGGCTGGGGGACGAG
CCTGCCTGCAAAACTCCTGCAACATTGCGAATGTCAAGTACGAAGAGCGT
GTCAGCCGAGATCAGCCATTAAGCGATAATACAAAATACGCCGAATTATT
AGTAAATGATGAGGTAATAGCGACAGGACAGGGGGAGAGCCTTAAGGCGG
CCAAGAAAGCTGCCTATAAGCAGGCGCATTTGACGATCCAGTCCTATTGC
TATAGTATTAAGCTGAATGCCACGCGCGACACCATCAAGGTGGAAAAAAA
CAAGGACGGCGTCAACATCAAAGTCACCAATGAGTCCGCCGACAGTCCGT
GCGATCCCAAATTGGACCCCAGCAACAAGGGATATCGCATGATGCGACTG
ATGGGCTGGACAGGCGGTGGCTTAGGGCGACTGAAGCAGGGACGTGAAGA
GCCCGTATGTTATCTGCTAAAGAACAATCGTAATGGTCTTGGATTAATAA
ATCCAAAGGGAAATTTCGCTGATTACCGACGGCTTATAGAAAACTATGTG
AGATCGGACGATATACGTGACATGCAGTTTGAGCCCACGTTTTCGAAGGA
AGAAAGAACCACGCTTCACCAAATCGCCAGACAATTTGGCTTGCGTTCCG
CTAGCTATGGGAGTGGAGAGAGCCGGCGCCTTTTGATTACCAAGAAGATC
GACTATGGCACAATACTGACTGAGGTCCTGCTTCGGCGGAACCCCAAGTT
TTGTGATCGTTACTTTGTGCACGTACCCATGCAGAAGGCGCACCTGTTTC
CTGGTCATGTGGCCGACCTGGAGATGAACGATGTATGTGAATAGGCAGGA
CGAACAAAATCTCAGCTCATAGTACTCTTATAAAAAGATCTTTATTCTTA
GTTTTAATATAAAGGATGTAAAATATATGAAAAGTATTTCTGACAAAAAA
AAAAAAAAAAAA

LD33178.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-RA 1516 CG31301-RA 18..1511 1..1494 7470 100 Plus
CG31301.a 1486 CG31301.a 1..1009 1..1009 5045 100 Plus
CG31301.a 1486 CG31301.a 1009..1481 1022..1494 2365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11170866..11171319 1..454 2270 100 Plus
chr3R 27901430 chr3R 11171427..11171787 452..812 1805 100 Plus
chr3R 27901430 chr3R 11172325..11172647 1172..1494 1615 100 Plus
chr3R 27901430 chr3R 11171842..11172040 811..1009 995 100 Plus
chr3R 27901430 chr3R 11172098..11172260 1009..1171 815 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15346231..15346684 1..454 2270 100 Plus
3R 32079331 3R 15346792..15347152 452..812 1805 100 Plus
3R 32079331 3R 15347690..15348012 1172..1494 1615 100 Plus
3R 32079331 3R 15347207..15347405 811..1009 995 100 Plus
3R 32079331 3R 15347463..15347625 1009..1171 815 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15087062..15087515 1..454 2270 100 Plus
3R 31820162 3R 15087623..15087983 452..812 1805 100 Plus
3R 31820162 3R 15088521..15088843 1172..1494 1615 100 Plus
3R 31820162 3R 15088038..15088236 811..1009 995 100 Plus
3R 31820162 3R 15088294..15088456 1009..1171 815 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:13:30 has no hits.

LD33178.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:14:32 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11170866..11171318 1..453 100 -> Plus
chr3R 11171429..11171787 454..812 100 -> Plus
chr3R 11171844..11172040 813..1009 100 -> Plus
chr3R 11172099..11172260 1010..1171 100 -> Plus
chr3R 11172325..11172647 1172..1494 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:52 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 1..1320 75..1394 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:04 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 1..1320 75..1394 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:03:55 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 1..1320 75..1394 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:39 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 1..1320 75..1394 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:27:24 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 1..1320 75..1394 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:14:39 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 1..1494 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:04 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 1..1494 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:03:55 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 27..1520 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:41 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 1..1494 1..1494 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:27:24 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 27..1520 1..1494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:32 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15347464..15347625 1010..1171 100 -> Plus
3R 15346231..15346683 1..453 100 -> Plus
3R 15346794..15347152 454..812 100 -> Plus
3R 15347209..15347405 813..1009 100 -> Plus
3R 15347690..15348012 1172..1494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:32 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15347464..15347625 1010..1171 100 -> Plus
3R 15346231..15346683 1..453 100 -> Plus
3R 15346794..15347152 454..812 100 -> Plus
3R 15347209..15347405 813..1009 100 -> Plus
3R 15347690..15348012 1172..1494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:32 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15347464..15347625 1010..1171 100 -> Plus
3R 15346231..15346683 1..453 100 -> Plus
3R 15346794..15347152 454..812 100 -> Plus
3R 15347209..15347405 813..1009 100 -> Plus
3R 15347690..15348012 1172..1494 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:03:55 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11172931..11173127 813..1009 100 -> Plus
arm_3R 11171953..11172405 1..453 100 -> Plus
arm_3R 11172516..11172874 454..812 100 -> Plus
arm_3R 11173186..11173347 1010..1171 100 -> Plus
arm_3R 11173412..11173734 1172..1494 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:00 Download gff for LD33178.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15087062..15087514 1..453 100 -> Plus
3R 15087625..15087983 454..812 100 -> Plus
3R 15088040..15088236 813..1009 100 -> Plus
3R 15088295..15088456 1010..1171 100 -> Plus
3R 15088521..15088843 1172..1494 100   Plus

LD33178.pep Sequence

Translation from 74 to 1393

> LD33178.pep
MSVQQSKPKQKKVKVKKQDDAGYGSGEFSLDWDVDSYKTEYESDEHWDLR
RSFMLAHKDRFEEDRLVCLAQTFVNMEFMGCKYPSATMLLVAELSKEIAA
DFRQKREQRLKRTFVSASDAAEQRAKGRRAPPLPSTSSPEDSSHIKRQCF
GGGDPVDLYQDLRFGRLIVYLAGGRACLQNSCNIANVKYEERVSRDQPLS
DNTKYAELLVNDEVIATGQGESLKAAKKAAYKQAHLTIQSYCYSIKLNAT
RDTIKVEKNKDGVNIKVTNESADSPCDPKLDPSNKGYRMMRLMGWTGGGL
GRLKQGREEPVCYLLKNNRNGLGLINPKGNFADYRRLIENYVRSDDIRDM
QFEPTFSKEERTTLHQIARQFGLRSASYGSGESRRLLITKKIDYGTILTE
VLLRRNPKFCDRYFVHVPMQKAHLFPGHVADLEMNDVCE*

LD33178.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22997-PA 453 GF22997-PA 31..453 20..439 1693 72.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16918-PA 450 GG16918-PA 1..450 1..439 2021 83.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16596-PA 445 GH16596-PA 23..445 14..439 1567 68.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-PA 439 CG31301-PA 1..439 1..439 2303 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22032-PA 449 GI22032-PA 35..449 27..439 1625 71.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13724-PA 436 GL13724-PA 3..431 11..434 1654 71.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16162-PA 463 GA16162-PA 36..458 18..434 1649 71.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24224-PA 438 GM24224-PA 1..438 1..439 2081 91.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19015-PA 438 GD19015-PA 1..438 1..439 2110 93.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10479-PA 428 GJ10479-PA 10..428 25..439 1612 70.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11774-PA 427 GK11774-PA 2..425 24..437 1361 63.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24300-PA 445 GE24300-PA 1..445 1..439 1953 83.4 Plus

LD33178.hyp Sequence

Translation from 74 to 1393

> LD33178.hyp
MSVQQSKPKQKKVKVKKQDDAGYGSGEFSLDWDVDSYKTEYESDEHWDLR
RSFMLAHKDRFEEDRLVCLAQTFVNMEFMGCKYPSATMLLVAELSKEIAA
DFRQKREQRLKRTFVSASDAAEQRAKGRRAPPLPSTSSPEDSSHIKRQCF
GGGDPVDLYQDLRFGRLIVYLAGGRACLQNSCNIANVKYEERVSRDQPLS
DNTKYAELLVNDEVIATGQGESLKAAKKAAYKQAHLTIQSYCYSIKLNAT
RDTIKVEKNKDGVNIKVTNESADSPCDPKLDPSNKGYRMMRLMGWTGGGL
GRLKQGREEPVCYLLKNNRNGLGLINPKGNFADYRRLIENYVRSDDIRDM
QFEPTFSKEERTTLHQIARQFGLRSASYGSGESRRLLITKKIDYGTILTE
VLLRRNPKFCDRYFVHVPMQKAHLFPGHVADLEMNDVCE*

LD33178.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-PA 439 CG31301-PA 1..439 1..439 2303 100 Plus