Clone LD33276 Report

Search the DGRC for LD33276

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:332
Well:76
Vector:pOT2
Associated Gene/TranscriptCG3704-RA
Protein status:LD33276.pep: gold
Preliminary Size:1761
Sequenced Size:1524

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3704 2001-01-01 Release 2 assignment
CG3704 2001-09-19 Blastp of sequenced clone
CG3704 2003-01-01 Sim4 clustering to Release 3
CG3704 2008-04-29 Release 5.5 accounting
CG3704 2008-08-15 Release 5.9 accounting
CG3704 2008-12-18 5.12 accounting

Clone Sequence Records

LD33276.complete Sequence

1524 bp (1524 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058634

> LD33276.complete
CACGCTTGTTTTTGCGCCTCCTGTTTTTGTTTTGATTCTTAGTGAAGCCG
TGAGAGAAATGGCAGAGGGAGTGGAGAGCATCAAGCTGGAGGCGCTGTCG
CTGAGCGAGGGAATCCGGGAGTCGCCCGTGTGCATACTGGTGCTGGGAAT
GGCCGGCAGCGGGAAGACCACGTTCACACAGAAGCTCATCCAGCACGCCC
AGGAGAAGTTCAATCCGTACGTGGTCAACCTGGATCCGGCGTGCAGGGAA
GTACCGTACGCGGCGCACGTGGACATACGGGACACGGTCAACTACCGGGA
GGTGATGAAGCAGTACCAACTGGGTCCCAACGGTGGCATTGTGACCGCGC
TCAATATGTTCACCACCAAAATGGCACAGTTTGCGGAGCTAGTGCGTCGC
GCTGGCGAGCGCGGACACAAGTGGTGTGTGATCGACACGCCCGGACAGAT
CGAGGTGTTTAACTGGTCGGCTTCCGGGAGCATCATAACCGAGGGACTGG
CCACCATGTTTCCCACCATTGTGGTCTATGTAATGGATGTGGAGCGCAGT
GCTTGCCCTACCACCTTCATGTCCAACATGCTGTACGCCTGCTCCATCCT
GTACAAGACCCGTTTGCCCTTCCTTGTGGCGCTGAACAAGATCGACCTAA
AGGACTGCGGATTTGTGATGGATTGGATGACAGACTTCGAGGCCTTCCAG
GAGGCCCAGGAGGAGGAGCACAGCTTCGTGAGCAACCTCACGCGCACCAT
GTCGCTCACCCTGGACACCTTCTACGAGAATCTAAGAACGTGCGGCGTCT
CGGCCAAGACAGGCGTAGGCTTCACCCAGCTACTGACGAAGATTCTCGAA
AGCGTGGACGAGTACGAGACGGACTACAAGCCTGTTTACGAAAAGAAGCG
CCAAGAGCGACTGGCGGAGAGTGCGACGGGTCCAAAGCCAGTGGATCATG
TGGAAGAGGACGGCCATGCCGTTCCCCTGGGATTGTCGCTTCAGGACCCA
CCGCCGCACACTGGAAACAGCATTTTCCTAATGGCACCTAGTCTGGTGCC
CGAGTCGGCGGAAATCGAAGACGAGGAGGAGATGGAGGAGGACGCGAAGG
GCACCGCCGAAGAACAAAACTTCCACAGCTTCGTGCAGAACCACCTGACT
GCCCAGCAGAGCAAGCGGGACAAACTGCAGCAGGAACAGGAACAGGCTCA
GCCGTAAATGGGCGGATTGTGATCCTCGATGGCTATGGATTTCGTGATTT
CGAGTTTTCATTTTTATTATTTACTTTAACAAGCAAAAACATTCAATATA
GTGTGTGTTCGTCACTTGCACCTCCGATATTTGGTTTGTATATATGGACT
TAGTTTAGCTTTGCAAATTAGTGATAACATATACATATGGAGGATATATC
CCGCTCGTAAATGTAAATGCAAGCCTCATACTTTGCGTAACTTACTCTGT
ATATATATATATGTATGCAGATAAATATATATATATTTACATTTATGCTG
TAAAAAAAAAAAAAAAAAAAAAAA

LD33276.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-RA 1851 CG3704-RA 89..1590 1..1502 7510 100 Plus
CG3704.a 2901 CG3704.a 89..1590 1..1502 7510 100 Plus
nc_21259.b 2345 nc_21259.b 2094..2345 1502..1251 1260 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 834122..834761 640..1 3200 100 Minus
chrX 22417052 chrX 833140..833651 1501..990 2560 100 Minus
chrX 22417052 chrX 833702..834058 995..639 1785 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 940152..940791 640..1 3200 100 Minus
X 23542271 X 939169..939681 1502..990 2565 100 Minus
X 23542271 X 939732..940088 995..639 1785 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 948250..948889 640..1 3200 100 Minus
X 23527363 X 947267..947779 1502..990 2565 100 Minus
X 23527363 X 947830..948186 995..639 1785 100 Minus
Blast to na_te.dros performed 2019-03-16 20:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4451..4489 867..905 123 79.5 Plus

LD33276.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:35:09 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 833193..833646 995..1450 99 <- Minus
chrX 833703..834056 641..994 100 <- Minus
chrX 834122..834761 1..640 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:59 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 1..1149 59..1207 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:05 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 1..1149 59..1207 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:14 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 1..1149 59..1207 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:31 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 1..1149 59..1207 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:17 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 1..1149 59..1207 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:51 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 11..1511 1..1501 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:05 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 11..1511 1..1501 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:14 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 15..1515 1..1501 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:31 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 11..1511 1..1501 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:17 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 15..1515 1..1501 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:35:09 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
X 939170..939676 995..1501 100 <- Minus
X 939733..940086 641..994 100 <- Minus
X 940152..940791 1..640 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:35:09 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
X 939170..939676 995..1501 100 <- Minus
X 939733..940086 641..994 100 <- Minus
X 940152..940791 1..640 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:35:09 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
X 939170..939676 995..1501 100 <- Minus
X 939733..940086 641..994 100 <- Minus
X 940152..940791 1..640 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:14 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 833203..833709 995..1501 100 <- Minus
arm_X 833766..834119 641..994 100 <- Minus
arm_X 834185..834824 1..640 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:08:05 Download gff for LD33276.complete
Subject Subject Range Query Range Percent Splice Strand
X 947268..947774 995..1501 100 <- Minus
X 947831..948184 641..994 100 <- Minus
X 948250..948889 1..640 100   Minus

LD33276.hyp Sequence

Translation from 0 to 1206

> LD33276.hyp
TLVFAPPVFVLILSEAVREMAEGVESIKLEALSLSEGIRESPVCILVLGM
AGSGKTTFTQKLIQHAQEKFNPYVVNLDPACREVPYAAHVDIRDTVNYRE
VMKQYQLGPNGGIVTALNMFTTKMAQFAELVRRAGERGHKWCVIDTPGQI
EVFNWSASGSIITEGLATMFPTIVVYVMDVERSACPTTFMSNMLYACSIL
YKTRLPFLVALNKIDLKDCGFVMDWMTDFEAFQEAQEEEHSFVSNLTRTM
SLTLDTFYENLRTCGVSAKTGVGFTQLLTKILESVDEYETDYKPVYEKKR
QERLAESATGPKPVDHVEEDGHAVPLGLSLQDPPPHTGNSIFLMAPSLVP
ESAEIEDEEEMEEDAKGTAEEQNFHSFVQNHLTAQQSKRDKLQQEQEQAQ
P*

LD33276.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-PA 382 CG3704-PA 1..382 20..401 1985 100 Plus
CG2656-PA 283 CG2656-PA 6..211 46..247 215 30.7 Plus
CG10222-PB 307 CG10222-PB 19..208 46..228 173 25.3 Plus
CG10222-PA 307 CG10222-PA 19..208 46..228 173 25.3 Plus

LD33276.pep Sequence

Translation from 58 to 1206

> LD33276.pep
MAEGVESIKLEALSLSEGIRESPVCILVLGMAGSGKTTFTQKLIQHAQEK
FNPYVVNLDPACREVPYAAHVDIRDTVNYREVMKQYQLGPNGGIVTALNM
FTTKMAQFAELVRRAGERGHKWCVIDTPGQIEVFNWSASGSIITEGLATM
FPTIVVYVMDVERSACPTTFMSNMLYACSILYKTRLPFLVALNKIDLKDC
GFVMDWMTDFEAFQEAQEEEHSFVSNLTRTMSLTLDTFYENLRTCGVSAK
TGVGFTQLLTKILESVDEYETDYKPVYEKKRQERLAESATGPKPVDHVEE
DGHAVPLGLSLQDPPPHTGNSIFLMAPSLVPESAEIEDEEEMEEDAKGTA
EEQNFHSFVQNHLTAQQSKRDKLQQEQEQAQP*

LD33276.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22048-PA 380 GF22048-PA 1..375 1..376 1625 80.9 Plus
Dana\GF17656-PA 284 GF17656-PA 6..186 27..197 212 30.4 Plus
Dana\GF10956-PA 307 GF10956-PA 19..208 27..209 184 25.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12730-PA 379 GG12730-PA 1..378 1..379 1808 90 Plus
Dere\GG13875-PA 283 GG13875-PA 6..186 27..197 209 30.4 Plus
Dere\GG13773-PA 307 GG13773-PA 19..208 27..209 187 25.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19561-PA 385 GH19561-PA 6..381 2..379 1613 76.5 Plus
Dgri\GH19007-PA 287 GH19007-PA 6..186 27..197 210 32 Plus
Dgri\GH14681-PA 310 GH14681-PA 17..206 27..209 185 25.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-PA 382 CG3704-PA 1..382 1..382 1985 100 Plus
CG2656-PA 283 CG2656-PA 6..211 27..228 215 30.7 Plus
CG10222-PB 307 CG10222-PB 19..208 27..209 173 25.3 Plus
CG10222-PA 307 CG10222-PA 19..208 27..209 173 25.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14999-PA 391 GI14999-PA 16..391 5..382 1629 77 Plus
Dmoj\GI23062-PA 289 GI23062-PA 6..186 27..197 221 33.9 Plus
Dmoj\GI13090-PA 307 GI13090-PA 17..206 27..209 184 25.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18533-PA 388 GL18533-PA 12..387 5..379 1641 78.5 Plus
Dper\GL12423-PA 286 GL12423-PA 6..186 27..197 211 32 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25677-PA 388 GA25677-PA 12..387 5..379 1638 78.5 Plus
Dpse\GA15412-PA 286 GA15412-PA 6..186 27..197 211 32 Plus
Dpse\GA28617-PA 307 GA28617-PA 19..208 27..209 191 26.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19010-PA 382 GM19010-PA 1..382 1..382 1857 95.8 Plus
Dsec\GM10937-PA 283 GM10937-PA 6..186 27..197 217 31.5 Plus
Dsec\GM24597-PA 307 GM24597-PA 19..208 27..209 185 25.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16449-PA 375 GD16449-PA 1..374 1..381 1935 94.8 Plus
Dsim\GD19916-PA 283 GD19916-PA 6..186 27..197 217 31.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15357-PA 399 GJ15357-PA 22..396 4..379 1604 77.7 Plus
Dvir\GJ24575-PA 201 GJ24575-PA 6..183 27..194 194 32 Plus
Dvir\GJ13838-PA 307 GJ13838-PA 17..206 27..209 191 26.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10172-PA 389 GK10172-PA 14..387 8..381 1550 75 Plus
Dwil\GK14522-PA 284 GK14522-PA 6..186 27..197 217 30.9 Plus
Dwil\GK17097-PA 307 GK17097-PA 19..208 27..209 186 26.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16556-PA 380 GE16556-PA 1..379 1..379 1741 89.7 Plus
Dyak\GE24908-PA 283 GE24908-PA 6..186 27..197 213 30.9 Plus
Dyak\GE20068-PA 307 GE20068-PA 19..208 27..209 183 25.3 Plus