Clone LD33329 Report

Search the DGRC for LD33329

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:333
Well:29
Vector:pOT2
Associated Gene/Transcriptjigr1-RC
Protein status:LD33329.pep: gold
Preliminary Size:2364
Sequenced Size:2249

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17383 2002-01-03 Blastp of sequenced clone
CG17383 2003-01-01 Sim4 clustering to Release 3
jigr1 2008-04-29 Release 5.5 accounting
jigr1 2008-08-15 Release 5.9 accounting
jigr1 2008-12-18 5.12 accounting

Clone Sequence Records

LD33329.complete Sequence

2249 bp (2249 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075409

> LD33329.complete
CGACGGTTGTGTCTCAAAAGAGCCTTCCAACTCCTGACTACTACTGATCA
AAAGAAATAAAAGTAAAAAGTGACCAAGTTACTGCGGATCGAGGAAGTTA
AAGCCTTGAGCCTCCGGCACGACGATGGTGTGTTAAACATTTTTGTGCGC
TTGTGTTTGTTTGTCGGTGAGTTGAGTGCGCGCGCTACTTTTATTTGTTA
ACTTCACCAAACAGAACCGTTAGTCCCAAGTGCCCTCACAAAAAAAAAAA
AATAGAAAAACACCAACTAAAGGAAAAGAAACATCATAAACCGACGAAAT
ATCCCCCAAAGAATCTGTGTAAAAGTGCAAAGAGACAAGGCGGAGAATGC
GCCCGAAAAAATCAAGGAAAAAATAACAGAAAAAACATTTGGCTGGGTGC
GGTGATCTTGAACCCGGGCTCAACTCCGCGTAACGGTGCATCGGCAAGTG
CAGGAAGAAATGGGTGAAGATGGAATAGAGGAGGAAGGAGGAGAAGAAGG
ATGAGGAGCGCGATGAGGCCGTTGCATTTCTTTTGATTGCTTGTGTATCA
TCTTCGGGGATCTCTGAGCGCCCACTCTTTTTGCGGGCATTTTCCGCTCA
TTTTTGGCGCAGCCTCCCAAAAGATCTCGAATTCGCAATATCAGAACATC
TGTGTTATTTTAATTATATAAAAGTATATATACAGTTTCAGTTTAAAAAA
TATTCTCACAGCGACTAGTTGTGCGTGCAGGCAAAAAGACAGAGCATCGC
GAGCGAAAGAGAGCGGCGAACATCGCACTGGCGGAGCGTCGTGTGTTGCG
CAGGCAATCTTAATTAATTTATTTACGTCTATATTGATTTTTTAAAGTAA
CAGCCACAGCTACAGTTAGCCATAATAGCCAGCTAGAAAGCAGAGGCAAG
CCCAAGCGCAACGCAGAGCAAAGAGCGCGCGTTTTAATAGGTATAAAAAT
AAAAATACACACTAAAACCAACCTGAGGCGAATCTAAATTGTATTTCTCG
AGGGCTGGAGGAGGAATGGAGAACCTGTCGCACTTGTATCCACCGCAGTT
GCCAAAGGGGCGTGGTCGGCCTCGAGCGACATACGCCCAAACGGGCGAGT
TTGATCTGGGTCTGATCCGGGAATACCGATCGCACCCAGTGCTGTACGAT
AGGTCAAACAAGCGGTTCAAGGACAAGCTGTATGTGGCCCATATATGGGA
ACAGATAGCCCACAAACTGGGCTACGATGCCACCAGTATAAGGGAACGGA
TGACCACGTTAAGGAATCGATATAACATCGAGAAGCGACGCGTCGAGAAT
GGCCTTTCCACACAGTCTTCACAATGGCCTCTATTCGAAAGCCTCCAGTT
TCTGGGGGATCACATACGGCCCAGGCGCAGCTTTAAGAACATGAGCGTAA
AGGAGGAGGATGAGGAGACCTACGAGGTGGACGATTGCCGGAGCGACAGC
AACGGGCATATGAACAGCATCAAGGACGAACTGGAGGACGACTCCGAGAT
CTTCGATTGCGAGCAGGCACTCCCCGTGACCACAGTGTTAGGGATTCCCC
TGAATAACTCTGACGAAGCCAACAAGAGCCAGCGCTCGACGAATGGAGAA
ATGCCCAATGGCAAGGGCTACAATCACTTTGCGGAAAGCTATCACCGACG
ACACCAAAACCAGCCGGAGTACATCATCAGTAGTCCAATTGTTAATCCCA
TGAGGAGCAATAAGCGTGGATCACAGCACTTGGACGATCATCCGTCGAAA
CGCCGAGTCGACGACAGTCTGTCGATATCCGGATACTATCCAACACAACC
TCTAGCCCCCTTGCCACCGGCGTACGCCAAATTCCGGGGATTTGGCGAGT
TCATGTGCCACTCCCTGTGCGATATGCCAGCGGCCACTGCCTTGCGCTTG
GTGCAGAAGTTCACCCGCGAATTGGTCCAGTCCTCGCTTCGCAACGAGGA
CAGCGGCAGCAAAGAAAAGACGGATGAGGTCGATCCGGTAGATCAGAGCA
GCGAGTCGCAGGAGGAGGACGAGTAGATTTAAGTTACACTTTTAAATTGA
GGGTAGGGATATTGGCACGCGTGTCTACATCTATGCGTATAGCATAAAAG
CTGCATTGATGACAAATTCGATTAATTCATTTATGATTTAATTATACTCT
TTTAAGTCTTCTAGCCTCGCAGTAACCGGGGTGGAAGATCCAAGCATTTC
ATTTATTAACATAATGGAAAAATACACTTAAAAAAAAAAAAAAAAAAAA

LD33329.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
jigr1-RB 2528 jigr1-RB 81..2310 1..2230 11150 100 Plus
jigr1-RA 2075 jigr1-RA 250..1857 623..2230 8040 100 Plus
jigr1.a 1980 jigr1.a 155..1762 623..2230 8040 100 Plus
jigr1-RA 2075 jigr1-RA 85..250 1..166 830 100 Plus
jigr1.a 1980 jigr1.a 29..155 1..127 635 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21472613..21473300 1542..2229 3440 100 Plus
chr3R 27901430 chr3R 21460944..21461567 1..623 3055 99.7 Plus
chr3R 27901430 chr3R 21470383..21470703 683..1003 1605 100 Plus
chr3R 27901430 chr3R 21472231..21472548 1229..1543 1495 98.7 Plus
chr3R 27901430 chr3R 21471931..21472159 1001..1229 1115 99.1 Plus
chr3R 27901430 chr3R 21469729..21469792 622..685 320 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25649563..25650251 1542..2230 3445 100 Plus
3R 32079331 3R 25637907..25638529 1..623 3115 100 Plus
3R 32079331 3R 25647334..25647654 683..1003 1605 100 Plus
3R 32079331 3R 25649184..25649498 1229..1543 1575 100 Plus
3R 32079331 3R 25648884..25649112 1001..1229 1145 100 Plus
3R 32079331 3R 25646680..25646743 622..685 320 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25390394..25391082 1542..2230 3445 100 Plus
3R 31820162 3R 25378738..25379360 1..623 3115 100 Plus
3R 31820162 3R 25388165..25388485 683..1003 1605 100 Plus
3R 31820162 3R 25390015..25390329 1229..1543 1575 100 Plus
3R 31820162 3R 25389715..25389943 1001..1229 1145 100 Plus
3R 31820162 3R 25387511..25387574 622..685 320 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:50:28 has no hits.

LD33329.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:51:52 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21471933..21472159 1003..1229 99 -> Plus
chr3R 21460944..21461567 1..623 99 -> Plus
chr3R 21469731..21469761 624..654 100 == Plus
chr3R 21470383..21470702 683..1002 100 -> Plus
chr3R 21472232..21472547 1230..1542 98 -> Plus
chr3R 21472614..21473300 1543..2229 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:08:35 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RD 1..1011 1016..2026 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:56:16 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RD 1..1011 1016..2026 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:00 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RE 1..1011 1016..2026 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:06 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RD 1..1011 1016..2026 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:36 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RE 1..1011 1016..2026 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:08:35 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RA 246..1852 623..2229 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:56:15 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RB 81..2309 1..2229 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:00 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RB 65..2293 1..2229 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:06 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RA 246..1852 623..2229 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:36 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
jigr1-RB 65..2293 1..2229 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:51:52 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25637907..25638529 1..623 100 -> Plus
3R 25646682..25646743 624..685 100 -> Plus
3R 25647337..25647653 686..1002 100 -> Plus
3R 25648886..25649112 1003..1229 100 -> Plus
3R 25649185..25649497 1230..1542 100 -> Plus
3R 25649564..25650250 1543..2229 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:51:52 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25637907..25638529 1..623 100 -> Plus
3R 25646682..25646743 624..685 100 -> Plus
3R 25647337..25647653 686..1002 100 -> Plus
3R 25648886..25649112 1003..1229 100 -> Plus
3R 25649185..25649497 1230..1542 100 -> Plus
3R 25649564..25650250 1543..2229 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:51:52 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25637907..25638529 1..623 100 -> Plus
3R 25646682..25646743 624..685 100 -> Plus
3R 25647337..25647653 686..1002 100 -> Plus
3R 25648886..25649112 1003..1229 100 -> Plus
3R 25649185..25649497 1230..1542 100 -> Plus
3R 25649564..25650250 1543..2229 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:00 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21463629..21464251 1..623 100 -> Plus
arm_3R 21472404..21472465 624..685 100 -> Plus
arm_3R 21473059..21473375 686..1002 100 -> Plus
arm_3R 21474608..21474834 1003..1229 100 -> Plus
arm_3R 21474907..21475219 1230..1542 100 -> Plus
arm_3R 21475286..21475972 1543..2229 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:55:48 Download gff for LD33329.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25388168..25388484 686..1002 100 -> Plus
3R 25378738..25379360 1..623 100 -> Plus
3R 25387513..25387574 624..685 100 -> Plus
3R 25389717..25389943 1003..1229 100 -> Plus
3R 25390016..25390328 1230..1542 100 -> Plus
3R 25390395..25391081 1543..2229 100   Plus

LD33329.pep Sequence

Translation from 1015 to 2025

> LD33329.pep
MENLSHLYPPQLPKGRGRPRATYAQTGEFDLGLIREYRSHPVLYDRSNKR
FKDKLYVAHIWEQIAHKLGYDATSIRERMTTLRNRYNIEKRRVENGLSTQ
SSQWPLFESLQFLGDHIRPRRSFKNMSVKEEDEETYEVDDCRSDSNGHMN
SIKDELEDDSEIFDCEQALPVTTVLGIPLNNSDEANKSQRSTNGEMPNGK
GYNHFAESYHRRHQNQPEYIISSPIVNPMRSNKRGSQHLDDHPSKRRVDD
SLSISGYYPTQPLAPLPPAYAKFRGFGEFMCHSLCDMPAATALRLVQKFT
RELVQSSLRNEDSGSKEKTDEVDPVDQSSESQEEDE*

LD33329.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17699-PA 337 GF17699-PA 1..335 1..335 1228 74.2 Plus
Dana\GF11060-PA 535 GF11060-PA 293..380 28..121 153 36.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11417-PA 336 GG11417-PA 1..336 1..336 1642 89.3 Plus
Dere\GG23211-PA 253 GG23211-PA 11..98 28..121 152 36.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18984-PA 343 GH18984-PA 11..198 5..178 505 58.7 Plus
Dgri\GH21743-PA 253 GH21743-PA 11..98 28..121 156 36.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
jigr1-PH 336 CG17383-PH 1..336 1..336 1784 100 Plus
jigr1-PG 336 CG17383-PG 1..336 1..336 1784 100 Plus
jigr1-PF 336 CG17383-PF 1..336 1..336 1784 100 Plus
jigr1-PE 336 CG17383-PE 1..336 1..336 1784 100 Plus
jigr1-PC 336 CG17383-PC 1..336 1..336 1784 100 Plus
jigr1-PD 336 CG17383-PD 1..336 1..336 1784 100 Plus
jigr1-PB 336 CG17383-PB 1..336 1..336 1784 100 Plus
jigr1-PA 336 CG17383-PA 1..336 1..336 1784 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22411-PA 361 GI22411-PA 28..343 9..311 650 48.8 Plus
Dmoj\GI19291-PA 253 GI19291-PA 11..98 28..121 155 36.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21524-PA 336 GL21524-PA 1..336 1..335 743 50.7 Plus
Dper\GL11108-PA 250 GL11108-PA 11..98 28..121 152 36.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14496-PB 332 GA14496-PB 1..332 1..335 742 50.6 Plus
Dpse\GA14496-PA 332 GA14496-PA 1..332 1..335 742 50.6 Plus
Dpse\GA13983-PA 250 GA13983-PA 11..98 28..121 152 36.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10256-PA 336 GM10256-PA 1..336 1..336 1767 97.6 Plus
Dsec\GM20885-PA 253 GM20885-PA 11..98 28..121 152 36.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21228-PA 336 GD21228-PA 1..336 1..336 1775 97.9 Plus
Dsim\GD10415-PA 253 GD10415-PA 11..98 28..121 152 36.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10970-PA 365 GJ10970-PA 12..352 3..318 637 47.6 Plus
Dvir\GJ22167-PA 253 GJ22167-PA 11..98 28..121 155 36.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12852-PA 357 GK12852-PA 25..357 8..335 860 54.4 Plus
Dwil\GK23084-PA 253 GK23084-PA 11..98 28..121 152 36.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23612-PA 334 GE23612-PA 1..334 1..336 1537 89.9 Plus
Dyak\GE19065-PA 253 GE19065-PA 11..98 28..121 152 36.2 Plus

LD33329.hyp Sequence

Translation from 1015 to 2025

> LD33329.hyp
MENLSHLYPPQLPKGRGRPRATYAQTGEFDLGLIREYRSHPVLYDRSNKR
FKDKLYVAHIWEQIAHKLGYDATSIRERMTTLRNRYNIEKRRVENGLSTQ
SSQWPLFESLQFLGDHIRPRRSFKNMSVKEEDEETYEVDDCRSDSNGHMN
SIKDELEDDSEIFDCEQALPVTTVLGIPLNNSDEANKSQRSTNGEMPNGK
GYNHFAESYHRRHQNQPEYIISSPIVNPMRSNKRGSQHLDDHPSKRRVDD
SLSISGYYPTQPLAPLPPAYAKFRGFGEFMCHSLCDMPAATALRLVQKFT
RELVQSSLRNEDSGSKEKTDEVDPVDQSSESQEEDE*

LD33329.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
jigr1-PG 336 CG17383-PG 1..336 1..336 1784 100 Plus
jigr1-PF 336 CG17383-PF 1..336 1..336 1784 100 Plus
jigr1-PE 336 CG17383-PE 1..336 1..336 1784 100 Plus
jigr1-PC 336 CG17383-PC 1..336 1..336 1784 100 Plus
jigr1-PD 336 CG17383-PD 1..336 1..336 1784 100 Plus