Clone LD33348 Report

Search the DGRC for LD33348

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:333
Well:48
Vector:pOT2
Associated Gene/Transcriptmbo-RA
Protein status:LD33348.pep: gold
Preliminary Size:2957
Sequenced Size:2564

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6819 2001-01-01 Release 2 assignment
CG6819 2001-07-04 Blastp of sequenced clone
CG6819 2003-01-01 Sim4 clustering to Release 3
mbo 2008-04-29 Release 5.5 accounting
mbo 2008-08-15 Release 5.9 accounting
mbo 2008-12-18 5.12 accounting

Clone Sequence Records

LD33348.complete Sequence

2564 bp (2564 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051827

> LD33348.complete
CCGGGCAACGAATTGAAGCATAAACAAACGATGTCGCTCACCGATGTCTT
GGAATTGAACAAAACGGAGTTGTTCGCGAAGATTCGCAATGGGTTGCCCG
TGGTGCAAAGGACTCAGAACCTGCTGGACTGCAAGGACGATCTGCTCTTT
GCCTGGCACGCGAAGGACAGCTGTCTGTTGGTTCGCAACTGGCGCTCATC
GCTGGCGGCAAAGGTGAATATCCAGTTCCAGACACTGATTCCATCGAGCT
TGGTGAGCCTGGAGGTGGACCGCGTGCTGGCCTCCAACGAGGGCTCCCTC
GTGGCACTAAGTGGACCGCGCGGCGTTGTCATAATGGAGCTGCCCCGCCG
CTGGGGCCCCGATGGATACTACAAGGATGGCAAGCCAGTGATCACCTGCC
GCACGTTCGGCCTGGACACTCAGCTTTTCCTAAAAAACCCGCACTTGGAA
GTGCGCCAGGTCCGCTGGCATCCGCACTCCGTGTCAGACTCCACGCTGCT
CGTGCTGCTCAACAACAACACGATTCGAGTGTACAATCACTCCAAGTTGC
GCCACGTGTGGCAGGTGGGTCCCCCGGTGCTTCGAAGTGGGGCCAATAAC
TCGCTATGCGACTTTGGCGAGCTAGCCGTTGACTTTGACATCGCTCCTGC
TGCAAAACCACGTGTCACTGAACCAGAAACAGCCGGCAATAACGAAACCA
CTTTGGATAAGAGCAACAAAACCCTTGTGGCGGCCAAATCGCTGCCGAAA
CAGGAGAGGATAGAGTGGCCCATGGTTGTGCTCCGCGAGAATGGAAACAT
CTACATTTTGATGACCGGCGTGGATTCGGAGAATACGCGCCTGCAGGGCC
CCGTTACCATAACGCCACAGGCACATGACAATTATGGACTGGAGTCCTGT
GCCCTAATGATTATCCCATCACTTCCGCCGACCATTGTTATAGCTGAATC
CAATGGAAAGCTTCACCATGCTCTGCTTATGGAGGCGGAGGCCACTGAGC
ATTCTTTCAATGAGGTTGACGACTCTGTGTTGATTGAACCCGCCGAATAC
GTTGTACATGTACTAGAAACTGTCGAACTTGAGCTGGGAATATCTGCACC
CGCAACTGGAAAAGAAGGAGGCAACTGTCCCATATACTTAAAGCGGGATT
TGATCAATGAGCTTCGCTACTTTGCCTACCACAACGCAGGACTTCATGCC
GTTACGGTCAGCTTTATCGCAGAGCTGCAACGTTACTTGGAAAGCGAGTC
CGATGAAGATCGTCTAGAGCTGGCGGTCTCTGCAAGTGCAGAGTACATTC
TGTGCACAAAATTCGATTCCAGTGAGACGGTGAACGCAGTCTTTGGACTT
GCCCTATTACAAATTCCTGCCGGTATAGTTCTACTGCTGGGCAGCGGTCA
GGTGATTAGCCTTAAGCTGGTAATTGATGCCCAGCTGTTGGTTACACCTA
ATGAGAATAAGCCAGTTGACTCGGAAGTGTCTCAGCAGGAAAGTGGGCCA
CCGTTTGTCGATACGATTAAATCGCTTTTGCAACGTAGTGTTAACCAGCC
CATCTTGGCGGATAAACTTTCCTCGCCATCCGCCCAGGAGAGCTTCGAAC
TGCTTAACCAGGCAATCGAGGTGCTTCGTGAGCAGTACCTTAAACGACAT
GACCTTGTGCGCGCCGCATTTACACGCCACATCAACCAGATCCAGCTGAA
GAAGGAACAACAGCTGCAGGAGATCCAAGACCTGGAGCAGGAACGCGAAC
TGATCAGCGAGCGGGCCCACAAGCTTGCCGAGCGCTTCGAGGAGATTAGC
TACAACCAGGAGCTGCTCGTCCGCAAGTGCAACGCTCTGATGCAGAGGGC
CAATGCCTCACTACCCAATAGTGTGATTGCGGAACGGGAGTTTTCGCAGG
AGGTGATTCGACTTAATAAGGTCACCCAGAGCCTGGCCGCTGGACTGGAG
ACTGCTAAGAAGACGTTTAACAAGCAGCGCTACCACATTGCCCAGAGTCA
AGAGGACCTCAAGAAGAACGCGTACGAGCTGCCGGAGAAACAGCACCGCA
CTATCACCGAGATACTTACCCAGCTAACCGGGGAGATCGATCGCCAGATC
ACCGACGTCAAGCGCATTAATAAAATCGTTGGCATCTAAATTCGGATTGG
GAAGCACGCTCTTAAGATTTCACCACGTTTTCGTGATAGTAAAGCCGTTG
CGTAGAACTAAAACGTATTTTTAATAAACATGTCAATTAAGTCCTATTTT
CGTTAGCTGGCTTCTGTTTTTTGTATTCGATGACACTTTAATGAGCATAC
GTCAGCGTTTTCTGCTAGACGATCCTTCATGAAGACACAAAAACATTTGA
TACCCATGGGTATTGTGCTACAAAGTCTACTACAGTAAAATCTATTCTTG
ACGTACTGTCCCATTTTCCGGATTATAGTTCAAAAAGTAAAATAATAGTA
ATAAAATAATAATAAGAATAAAATAATGAATAATAATAGTAGACTTCATA
CATCATAATTCGGAAATACAAAGTATTGTAGTACTGCTGTAACATAAAAA
AAAAAAAAAAAAAA

LD33348.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
mbo-RA 2559 mbo-RA 14..2559 1..2546 12730 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8501727..8504268 2542..1 12650 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12676486..12679031 2546..1 12730 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12417317..12419862 2546..1 12730 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:21:24 has no hits.

LD33348.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:22:33 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8501724..8504268 1..2545 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:15:06 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 1..2109 31..2139 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:18:57 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 1..2109 31..2139 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:09:45 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 1..2109 31..2139 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:33 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 1..2109 31..2139 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:03:32 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 1..2109 31..2139 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:14:29 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 14..2558 1..2545 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:18:57 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 14..2558 1..2545 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:45 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 22..2566 1..2545 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:33 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 14..2558 1..2545 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:03:32 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 22..2566 1..2545 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:33 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12676487..12679031 1..2545 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:33 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12676487..12679031 1..2545 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:33 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12676487..12679031 1..2545 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:45 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8502209..8504753 1..2545 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:28:52 Download gff for LD33348.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12417318..12419862 1..2545 100   Minus

LD33348.hyp Sequence

Translation from 0 to 2138

> LD33348.hyp
PGNELKHKQTMSLTDVLELNKTELFAKIRNGLPVVQRTQNLLDCKDDLLF
AWHAKDSCLLVRNWRSSLAAKVNIQFQTLIPSSLVSLEVDRVLASNEGSL
VALSGPRGVVIMELPRRWGPDGYYKDGKPVITCRTFGLDTQLFLKNPHLE
VRQVRWHPHSVSDSTLLVLLNNNTIRVYNHSKLRHVWQVGPPVLRSGANN
SLCDFGELAVDFDIAPAAKPRVTEPETAGNNETTLDKSNKTLVAAKSLPK
QERIEWPMVVLRENGNIYILMTGVDSENTRLQGPVTITPQAHDNYGLESC
ALMIIPSLPPTIVIAESNGKLHHALLMEAEATEHSFNEVDDSVLIEPAEY
VVHVLETVELELGISAPATGKEGGNCPIYLKRDLINELRYFAYHNAGLHA
VTVSFIAELQRYLESESDEDRLELAVSASAEYILCTKFDSSETVNAVFGL
ALLQIPAGIVLLLGSGQVISLKLVIDAQLLVTPNENKPVDSEVSQQESGP
PFVDTIKSLLQRSVNQPILADKLSSPSAQESFELLNQAIEVLREQYLKRH
DLVRAAFTRHINQIQLKKEQQLQEIQDLEQERELISERAHKLAERFEEIS
YNQELLVRKCNALMQRANASLPNSVIAEREFSQEVIRLNKVTQSLAAGLE
TAKKTFNKQRYHIAQSQEDLKKNAYELPEKQHRTITEILTQLTGEIDRQI
TDVKRINKIVGI*

LD33348.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
mbo-PA 702 CG6819-PA 1..702 11..712 3554 100 Plus

LD33348.pep Sequence

Translation from 30 to 2138

> LD33348.pep
MSLTDVLELNKTELFAKIRNGLPVVQRTQNLLDCKDDLLFAWHAKDSCLL
VRNWRSSLAAKVNIQFQTLIPSSLVSLEVDRVLASNEGSLVALSGPRGVV
IMELPRRWGPDGYYKDGKPVITCRTFGLDTQLFLKNPHLEVRQVRWHPHS
VSDSTLLVLLNNNTIRVYNHSKLRHVWQVGPPVLRSGANNSLCDFGELAV
DFDIAPAAKPRVTEPETAGNNETTLDKSNKTLVAAKSLPKQERIEWPMVV
LRENGNIYILMTGVDSENTRLQGPVTITPQAHDNYGLESCALMIIPSLPP
TIVIAESNGKLHHALLMEAEATEHSFNEVDDSVLIEPAEYVVHVLETVEL
ELGISAPATGKEGGNCPIYLKRDLINELRYFAYHNAGLHAVTVSFIAELQ
RYLESESDEDRLELAVSASAEYILCTKFDSSETVNAVFGLALLQIPAGIV
LLLGSGQVISLKLVIDAQLLVTPNENKPVDSEVSQQESGPPFVDTIKSLL
QRSVNQPILADKLSSPSAQESFELLNQAIEVLREQYLKRHDLVRAAFTRH
INQIQLKKEQQLQEIQDLEQERELISERAHKLAERFEEISYNQELLVRKC
NALMQRANASLPNSVIAEREFSQEVIRLNKVTQSLAAGLETAKKTFNKQR
YHIAQSQEDLKKNAYELPEKQHRTITEILTQLTGEIDRQITDVKRINKIV
GI*

LD33348.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17877-PA 703 GF17877-PA 1..702 1..701 2929 77.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17108-PA 703 GG17108-PA 1..703 1..702 3368 90.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19600-PA 701 GH19600-PA 3..701 2..702 2541 68.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
mbo-PA 702 CG6819-PA 1..702 1..702 3554 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22267-PA 701 GI22267-PA 1..701 1..702 2483 65.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27340-PA 698 GL27340-PA 1..698 1..702 2703 73.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19884-PA 698 GA19884-PA 1..698 1..702 2730 74 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25992-PA 702 GM25992-PA 1..702 1..702 3491 92.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20552-PA 702 GD20552-PA 1..702 1..702 3523 93.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24058-PA 705 GJ24058-PA 1..705 1..702 2563 67.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13562-PA 701 GK13562-PA 1..701 1..702 2534 66.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24497-PA 704 GE24497-PA 1..704 1..702 3496 92.9 Plus