Clone LD33386 Report

Search the DGRC for LD33386

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:333
Well:86
Vector:pOT2
Associated Gene/TranscriptKdm4A-RA
Protein status:LD33386.pep: gold
Preliminary Size:2184
Sequenced Size:2017

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15835 2001-01-01 Release 2 assignment
CG15835 2001-09-19 Blastp of sequenced clone
CG15835 2003-01-01 Sim4 clustering to Release 3
CG15835 2008-04-29 Release 5.5 accounting
CG15835 2008-08-15 Release 5.9 accounting
CG15835 2008-12-18 5.12 accounting

Clone Sequence Records

LD33386.complete Sequence

2017 bp (2017 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058636

> LD33386.complete
GCAAAGGAGATTCGTTTCGCTTGCTTAATTTTTTTGCTGCTCCTTCAATA
TGTCCACGAGATCTTCATTCGCCGATGAAGAGCAGAACAAAGTGCCCCGT
ATCATGACCTTCCGTCCCAGCTACGAGGAGTTTCAAAATTTTTCCGCCTA
CATTGAGTACATTGAGTCTCGGGGAGCACACTTAGCCGGCTTGGCCAAAA
TCCAACCACCTGCGGAATGGGTGCCCCGAAAGTCGGGCTACGACATAGAC
AACATCAACATGACCATTCCAGCGCCGATTTGCCAAGTAGTCACTGGGGC
GCACGGGGTGTACCAGCAAATCAACATCCAGCAGCGCCGGCAGATGACCT
TGCGCCAATTCATGGAGAAGGCCAACTCGGAGCTGCACCAGACACCGAGG
CACTTCGACTACGACGATCTGGAGCGCAAGTACTGGAAGAACATCACCTA
CATATCGCCACTGTATGCAGCCGATGTCAAGGGATCGCTGAGTGATGAAG
ACCTTGACGTTTGGAACATTGGACGCTTGGACACCATATTAAACTTGGTC
AACACTGACTACAACATAATCATCGATGGGGTAAACACGGCTTACCTCTA
CTTTGGCATGTGGAAGAGCTCTTTTGCCTGGCATACCGAGGACATGGATC
TGTATTCTATTAACTATCTGCATTTTGGAGCACCCAAAACCTGGTACGCC
ATTCCGCCGGCGTATGGCAGACGTCTGGAGAAGCTGGCGAACGAAACCTT
CTCTGAGAACTACCAGGAATGCAATGCCTATCTTCGCCATAAGATGACCA
TGATCAGTCCGAAGGTGCTGCGCCAGCACAACATACCTTACAACAAGATC
ACGCAGGAAGCGGGCGAAATCATGATTACATTTCCCTTCGGCTACCATGC
CGGGTTCAATCATGGCTTCAACGGCGCCGAGTCGACCAACTTTGCGTCGA
AGCGTTGGATCGAGTACGGCAAGCGGGCTAGTATTTGCCGATGCCGCAGC
GACATGGTTAAGATCTCGATGGAGACCTTCGTACGCCGTTTCCAGCCAGA
GCGATACGATAATTGGCTGAAAGGTCAGGACATGGGCTGTCATCCCGAGG
AGCCGGGTAAAATATGCGCTGCAGCACCACCCACTTTGAATGAGTACGAG
AAACAGGAAAACTTACGTGCAGCCAAATCCGAAGAAGAATCTCCGCAGAA
GCGAGGCTGCTCGCTGGCCGGCAATGGATGTGAACGAAACGCGGAGTCCG
CCGAGGATGTCGACGATAAGGCCAGTGTGAGCAGCTATAGCAGCTGCCGC
CAGCTGCAGCCAGTTGTCAAACTACGCAAACTCCCAACCATTGCGTCTGT
ACCTGAACCATCTTCCGCCCCCAAGAGATACGACTTCAATACTGAGGCTG
TGGTGCGCGTAAAGCGCCTATGGAATGAACTGCCCTGTCCGGATCGAGGG
GCCAACCTGCTCACCAACGGTGTAGTAAAGAATACCAAACGAATGCGCTT
CCAGACAAAAGTACTCACACTTGACGACGAGGATTGAGGATTCCAGATGT
GGCACTGCTTGCTGGCAGTTTTTGATCTCCTTGTTAGATTTTCGCGCCGC
AGCAATCAAAGATCTAGTAGTGATATTCTTTGGTAAATTTTTATACATTT
TAAGAGGACATGACGACATAACTAAGAAGATATGTGTGTATAATTTAGAA
GACAAGCAAATTCGTGCAAACAAATATGTAAATCTTTAAGCTGTAGCTGT
AGGGCAGACTGAATTTGTCCGTTCACATTTTAATTTAACAAGTGTCTGTT
CCCACCGAAAGAAGTATTGCAACACAATTTAAATCTGAAAATGCCAAAAT
CATTTTTTAAAGAACACCCTAAAGGCCAATGTCTATAATCACACAGATAT
ATCGTTTAATAATTTGATATGTTATGACATGTGTAAAATTCTTTGCAACC
AAAAGAGAAACGCCCACTAAATTGGCAACCATTTTTAAGGAACTATCAGA
AAAAAAAAAAAAAAAAA

LD33386.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Kdm4A-RA 2081 Kdm4A-RA 75..2079 1..2005 10025 100 Plus
Kdm4A.a 2007 Kdm4A.a 19..1161 1..1143 5715 100 Plus
Kdm4A.a 2007 Kdm4A.a 1161..2005 1161..2005 4225 100 Plus
Kdm4B-RB 1982 Kdm4B-RB 978..1111 845..978 430 88 Plus
Kdm4B-RB 1982 Kdm4B-RB 717..829 584..696 205 78.7 Plus
Kdm4B-RB 1982 Kdm4B-RB 534..577 401..444 145 88.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3811050..3811914 1161..297 4265 99.5 Minus
chr2R 21145070 chr2R 3810156..3810993 1999..1162 4190 100 Minus
chr2R 21145070 chr2R 3812141..3812345 205..1 1025 100 Minus
chr2R 21145070 chr2R 3810015..3810139 1983..1859 535 95.2 Minus
chr2R 21145070 chr2R 3811978..3812070 298..206 465 100 Minus
chr2R 21145070 chr2R 9074072..9074249 1023..846 440 83.1 Minus
chr2R 21145070 chr2R 9074457..9074569 696..584 205 78.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7923669..7924533 1161..297 4325 100 Minus
2R 25286936 2R 7922769..7923612 2005..1162 4220 100 Minus
2R 25286936 2R 7924761..7924965 205..1 1025 100 Minus
2R 25286936 2R 7922634..7922758 1983..1859 520 94.4 Minus
2R 25286936 2R 7924597..7924689 298..206 465 100 Minus
2R 25286936 2R 13186747..13186924 1023..846 440 83.1 Minus
2R 25286936 2R 13187132..13187244 696..584 205 78.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7924868..7925732 1161..297 4325 100 Minus
2R 25260384 2R 7923968..7924811 2005..1162 4220 100 Minus
2R 25260384 2R 7925960..7926164 205..1 1025 100 Minus
2R 25260384 2R 7923833..7923957 1983..1859 520 94.4 Minus
2R 25260384 2R 7925796..7925888 298..206 465 100 Minus
2R 25260384 2R 13187991..13188123 978..846 425 87.9 Minus
2R 25260384 2R 13188331..13188443 696..584 205 78.7 Minus
2R 25260384 2R 13188657..13188700 444..401 145 88.6 Minus
Blast to na_te.dros performed 2019-03-16 11:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 1166..1236 1968..1897 114 63.9 Minus

LD33386.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:08:26 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3810156..3810993 1162..1999 100 <- Minus
chr2R 3811050..3811913 298..1161 99 <- Minus
chr2R 3811979..3812070 206..297 100 <- Minus
chr2R 3812141..3812345 1..205 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:15:11 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
CG15835-RA 1..1488 50..1537 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:54 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
Kdm4A-RA 1..1488 50..1537 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:34:37 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
Kdm4A-RA 1..1488 50..1537 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:20 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
CG15835-RA 1..1488 50..1537 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:36 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
Kdm4A-RA 1..1488 50..1537 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:33 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
CG15835-RA 19..2017 1..1999 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:54 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
Kdm4A-RA 19..2017 1..1999 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:34:37 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
Kdm4A-RA 24..2022 1..1999 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:20 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
CG15835-RA 19..2017 1..1999 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:36 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
Kdm4A-RA 24..2022 1..1999 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:26 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7923669..7924532 298..1161 100 <- Minus
2R 7924598..7924689 206..297 100 <- Minus
2R 7924761..7924965 1..205 100   Minus
2R 7922775..7923612 1162..1999 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:26 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7923669..7924532 298..1161 100 <- Minus
2R 7924598..7924689 206..297 100 <- Minus
2R 7924761..7924965 1..205 100   Minus
2R 7922775..7923612 1162..1999 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:26 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7923669..7924532 298..1161 100 <- Minus
2R 7924598..7924689 206..297 100 <- Minus
2R 7924761..7924965 1..205 100   Minus
2R 7922775..7923612 1162..1999 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:34:37 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3810280..3811117 1162..1999 100 <- Minus
arm_2R 3811174..3812037 298..1161 100 <- Minus
arm_2R 3812103..3812194 206..297 100 <- Minus
arm_2R 3812266..3812470 1..205 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:52 Download gff for LD33386.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7923974..7924811 1162..1999 100 <- Minus
2R 7924868..7925731 298..1161 100 <- Minus
2R 7925797..7925888 206..297 100 <- Minus
2R 7925960..7926164 1..205 100   Minus

LD33386.pep Sequence

Translation from 49 to 1536

> LD33386.pep
MSTRSSFADEEQNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAK
IQPPAEWVPRKSGYDIDNINMTIPAPICQVVTGAHGVYQQINIQQRRQMT
LRQFMEKANSELHQTPRHFDYDDLERKYWKNITYISPLYAADVKGSLSDE
DLDVWNIGRLDTILNLVNTDYNIIIDGVNTAYLYFGMWKSSFAWHTEDMD
LYSINYLHFGAPKTWYAIPPAYGRRLEKLANETFSENYQECNAYLRHKMT
MISPKVLRQHNIPYNKITQEAGEIMITFPFGYHAGFNHGFNGAESTNFAS
KRWIEYGKRASICRCRSDMVKISMETFVRRFQPERYDNWLKGQDMGCHPE
EPGKICAAAPPTLNEYEKQENLRAAKSEEESPQKRGCSLAGNGCERNAES
AEDVDDKASVSSYSSCRQLQPVVKLRKLPTIASVPEPSSAPKRYDFNTEA
VVRVKRLWNELPCPDRGANLLTNGVVKNTKRMRFQTKVLTLDDED*

LD33386.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11231-PA 495 GF11231-PA 1..495 1..495 2272 86.3 Plus
Dana\GF12967-PA 497 GF12967-PA 2..400 11..404 1425 64.4 Plus
Dana\GF14289-PA 1840 GF14289-PA 518..757 94..308 361 34.4 Plus
Dana\GF25139-PA 2342 GF25139-PA 2019..2182 144..308 183 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10700-PA 495 GG10700-PA 1..495 1..495 2519 94.5 Plus
Dere\GG22520-PA 635 GG22520-PA 2..400 11..404 1412 63.4 Plus
Dere\GG24264-PA 1840 GG24264-PA 513..752 94..308 361 34.4 Plus
Dere\GG15383-PA 2341 GG15383-PA 2018..2181 144..308 182 27.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20585-PA 497 GH20585-PA 1..497 1..495 2150 78.7 Plus
Dgri\GH24950-PA 616 GH24950-PA 4..398 15..404 1426 64.2 Plus
Dgri\GH10714-PA 1920 GH10714-PA 545..784 94..308 354 32.4 Plus
Dgri\GH15241-PA 2584 GH15241-PA 2257..2420 144..308 184 27.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
Kdm4A-PA 495 CG15835-PA 1..495 1..495 2657 100 Plus
Kdm4A-PB 489 CG15835-PB 1..489 1..495 2604 98.6 Plus
Kdm4B-PE 717 CG33182-PE 2..380 11..380 1380 65.8 Plus
Kdm4B-PD 590 CG33182-PD 2..380 11..380 1380 65.8 Plus
Kdm4B-PC 590 CG33182-PC 2..380 11..380 1380 65.8 Plus
Kdm4B-PB 590 CG33182-PB 2..380 11..380 1380 65.8 Plus
Kdm4B-PA 590 CG33182-PA 2..380 11..380 1380 65.8 Plus
lid-PF 1838 CG9088-PF 511..750 94..308 353 34.4 Plus
lid-PE 1838 CG9088-PE 511..750 94..308 353 34.4 Plus
lid-PD 1838 CG9088-PD 511..750 94..308 353 34.4 Plus
lid-PC 1838 CG9088-PC 511..750 94..308 353 34.4 Plus
lid-PB 1838 CG9088-PB 511..750 94..308 353 34.4 Plus
lid-PA 1838 CG9088-PA 511..750 94..308 353 34.4 Plus
Jarid2-PD 2351 CG3654-PD 2028..2275 144..384 180 25.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19732-PA 503 GI19732-PA 1..503 1..495 2122 82.9 Plus
Dmoj\GI18397-PA 625 GI18397-PA 4..398 15..404 1445 65 Plus
Dmoj\GI11300-PA 1912 GI11300-PA 536..775 94..308 355 34.4 Plus
Dmoj\moj32-PA 2498 GI11951-PA 2175..2338 144..308 182 27.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10386-PA 492 GL10386-PA 1..492 1..495 2156 80.8 Plus
Dper\GL17673-PA 451 GL17673-PA 4..399 15..404 1422 64.6 Plus
Dper\GL19092-PA 1854 GL19092-PA 507..746 94..308 361 34.4 Plus
Dper\GL17885-PA 739 GL17885-PA 416..579 144..308 184 27.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13980-PA 492 GA13980-PA 1..492 1..495 2158 81 Plus
Dpse\GA24867-PB 579 GA24867-PB 4..399 15..404 1428 64.6 Plus
Dpse\GA25342-PA 1887 GA25342-PA 516..755 94..308 362 34.4 Plus
Dpse\GA28524-PA 2510 GA28524-PA 2187..2350 144..308 185 27.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20746-PA 495 GM20746-PA 1..495 1..495 2658 98 Plus
Dsec\GM20306-PA 487 GM20306-PA 2..400 11..404 1401 63.6 Plus
Dsec\GM17977-PA 1715 GM17977-PA 511..750 94..308 360 34.4 Plus
Dsec\GM25154-PA 2352 GM25154-PA 2029..2192 144..308 182 27.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10212-PA 495 GD10212-PA 1..495 1..495 2663 98 Plus
Dsim\GD17878-PA 156 GD17878-PA 2..149 11..158 517 61.1 Plus
Dsim\GD22615-PA 745 GD22615-PA 511..721 94..279 259 31.6 Plus
Dsim\GD14188-PA 2319 GD14188-PA 1996..2159 144..308 181 27.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18422-PA 501 GJ18422-PA 3..501 2..495 2192 83 Plus
Dvir\GJ21475-PA 624 GJ21475-PA 4..398 15..404 1429 64.5 Plus
Dvir\GJ12537-PA 1533 GJ12537-PA 134..373 94..308 352 32.4 Plus
Dvir\GJ12176-PA 2442 GJ12176-PA 2119..2282 144..308 182 27.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21350-PA 490 GK21350-PA 1..490 1..495 2112 82.8 Plus
Dwil\GK21396-PA 461 GK21396-PA 6..400 15..404 1416 64 Plus
Dwil\GK15405-PA 1900 GK15405-PA 559..798 94..308 340 32.8 Plus
Dwil\GK20560-PA 2595 GK20560-PA 2271..2519 144..384 184 24 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23530-PA 495 GE23530-PA 1..495 1..495 2525 94.9 Plus
Dyak\GE13392-PA 468 GE13392-PA 2..400 11..404 1406 63.4 Plus
Dyak\GE18962-PA 1839 GE18962-PA 513..752 94..308 361 34.4 Plus
Dyak\GE20846-PA 2349 GE20846-PA 2026..2189 144..308 181 27.3 Plus

LD33386.hyp Sequence

Translation from 49 to 1536

> LD33386.hyp
MSTRSSFADEEQNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAK
IQPPAEWVPRKSGYDIDNINMTIPAPICQVVTGAHGVYQQINIQQRRQMT
LRQFMEKANSELHQTPRHFDYDDLERKYWKNITYISPLYAADVKGSLSDE
DLDVWNIGRLDTILNLVNTDYNIIIDGVNTAYLYFGMWKSSFAWHTEDMD
LYSINYLHFGAPKTWYAIPPAYGRRLEKLANETFSENYQECNAYLRHKMT
MISPKVLRQHNIPYNKITQEAGEIMITFPFGYHAGFNHGFNGAESTNFAS
KRWIEYGKRASICRCRSDMVKISMETFVRRFQPERYDNWLKGQDMGCHPE
EPGKICAAAPPTLNEYEKQENLRAAKSEEESPQKRGCSLAGNGCERNAES
AEDVDDKASVSSYSSCRQLQPVVKLRKLPTIASVPEPSSAPKRYDFNTEA
VVRVKRLWNELPCPDRGANLLTNGVVKNTKRMRFQTKVLTLDDED*

LD33386.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Kdm4A-PA 495 CG15835-PA 1..495 1..495 2657 100 Plus
Kdm4A-PB 489 CG15835-PB 1..489 1..495 2604 98.6 Plus
Kdm4B-PD 590 CG33182-PD 2..380 11..380 1380 65.8 Plus
Kdm4B-PC 590 CG33182-PC 2..380 11..380 1380 65.8 Plus
Kdm4B-PB 590 CG33182-PB 2..380 11..380 1380 65.8 Plus