Clone LD33682 Report

Search the DGRC for LD33682

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:336
Well:82
Vector:pOT2
Associated Gene/TranscriptAte1-RB
Protein status:LD33682.pep: gold
Sequenced Size:1610

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9204 2002-11-13 Blastp of sequenced clone
Ate1 2008-04-29 Release 5.5 accounting
Ate1 2008-08-15 Release 5.9 accounting
Ate1 2008-12-18 5.12 accounting

Clone Sequence Records

LD33682.complete Sequence

1610 bp assembled on 2006-11-09

GenBank Submission: BT001498

> LD33682.complete
CGGCTTGCAGCTTTAATATTTTAGTCGTAATTAAATGCAATATGTTTGTA
CTATAAACGCCGTCGGAAGAGCTTAATAATGAGCTTGAGCATTGTGAGTT
ACTATGGCAGCCAGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGC
AGCCTGTCGCACGGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCA
GGACCTCATCGATCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGC
TGCGCAACCAGGAGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGC
CTGGAGTTCAAGCTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAA
TCGATTTTTGCGCGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACG
GTGACGGGGAAGCCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACG
GCCAGCGAACCGCAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAA
TGTCGAGCAAGTTGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGC
AGGCAACTGCTGCCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCA
TCACTCTTATCTTCATCAGCCGCAGCACCGATCTCAAACAAGCCGTGCAA
GAAGGCCAAGCAGATGCGATTGGATCGACGGCTGGCCAAGCTGGGAGACT
CGGCCTCCTACTCAACGAAATCCCTTACCCAGGAAAAGACACTTCGCGAC
TTCTTGAACACGGACAGCGAGACAAACAAACATCGGCTAAAGCTGCGCTT
AATTCACGTCTACGACGACGAGTTCCGGCGGACCCTGCCCCAGAGTTTTG
CGCTCTATAAGAAGTATCAGATATCGATACATAATGATCCGCCAAAGGAT
CAGGACGCGTACAAGGAGCATCTGCAGGCGACTCCCCTACAGAATGAGAA
ACCCTGGGATGGTCCCGAAATGGGCTACGGTTCGTTTCATCAGCAGTACT
GGCTGGACGACAAGTTGATTGCCGTCGGCGTGATTGACATTCTGCCGGGT
TGTGTAAGCTCGGTGTACTTTTTCTACGATCCGGACTATAGCTTTTTATC
GCTTGGCACATATGGTTCACTCAGGGAAATTGAATTGGTGCAGTCGCTCG
CCGAGAAGGTGCCTTCTCTCAAGTATTACTATATGGGTTTCTACATACAC
TCCTGTCCCAAAATGCGCTACAAGGGCAAGTTGTCCCCCTCTTACTTGCT
GTGCCCGGAGACCTATGAATGGCTACCGCTCACCGATGTTATTCGTGCTA
AGCTAGACGAACATAAATACCAGCGCTTAAACGAAGATCCTGCAGCTAGG
GATGTGAATGAGTTTTTGATGGAGCATTTGGACGAAGTTAAGCTGCTCTT
GGGTGGAAGAACCCGCACAGACTACAAGCACTTTAGGCAGCTGCGTGGGA
CCGTCTCCGATGACGATATCATTATTGAGTACAGCAAGCTCGTGGGAAAA
GAGTGTGCTCGGCGCATGCTATACGTGAAGTAAAGTTGCCATTATTTGAA
TTTTGAATTAAATGCCGTTCGCAATAGCAATATGTTGAAAATAAAAAAAA
AAAAAAAAAA

LD33682.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ate1-RB 1696 Ate1-RB 45..1642 1..1598 7975 99.9 Plus
Ate1-RA 1719 Ate1-RA 643..1621 620..1598 4880 99.8 Plus
Ate1-RC 2860 Ate1-RC 967..1624 941..1598 3275 99.8 Plus
Ate1-RA 1719 Ate1-RA 45..643 1..599 2995 100 Plus
Ate1-RC 2860 Ate1-RC 45..643 1..599 2995 100 Plus
Ate1-RC 2860 Ate1-RC 643..815 620..792 865 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16143730..16144165 598..163 2090 98.6 Minus
chr2R 21145070 chr2R 16143471..16143669 797..599 950 98.5 Minus
chr2R 21145070 chr2R 16142663..16142852 1129..940 920 98.9 Minus
chr2R 21145070 chr2R 16142448..16142614 1288..1122 835 100 Minus
chr2R 21145070 chr2R 16144235..16144400 166..1 815 99.4 Minus
chr2R 21145070 chr2R 16142027..16142181 1592..1438 775 100 Minus
chr2R 21145070 chr2R 16142926..16143077 942..791 760 100 Minus
chr2R 21145070 chr2R 16142237..16142389 1440..1288 750 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20256690..20257125 598..163 2180 100 Minus
2R 25286936 2R 20256431..20256629 797..599 980 99.5 Minus
2R 25286936 2R 20255623..20255812 1129..940 935 99.5 Minus
2R 25286936 2R 20255408..20255574 1288..1122 835 100 Minus
2R 25286936 2R 20257196..20257360 165..1 825 100 Minus
2R 25286936 2R 20254981..20255141 1598..1438 790 99.4 Minus
2R 25286936 2R 20255197..20255349 1440..1288 765 100 Minus
2R 25286936 2R 20255886..20256037 942..791 760 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20257889..20258324 598..163 2180 100 Minus
2R 25260384 2R 20257630..20257828 797..599 980 99.4 Minus
2R 25260384 2R 20256822..20257011 1129..940 935 99.4 Minus
2R 25260384 2R 20256607..20256773 1288..1122 835 100 Minus
2R 25260384 2R 20258395..20258559 165..1 825 100 Minus
2R 25260384 2R 20256180..20256340 1598..1438 790 99.3 Minus
2R 25260384 2R 20256396..20256548 1440..1288 765 100 Minus
2R 25260384 2R 20257085..20257236 942..791 760 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:58:04 has no hits.

LD33682.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:58:49 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16142926..16143075 793..942 100 <- Minus
chr2R 16142448..16142611 1125..1288 100 <- Minus
chr2R 16142668..16142849 943..1124 99 <- Minus
chr2R 16142032..16142178 1441..1587 100 <- Minus
chr2R 16142237..16142388 1289..1440 99 <- Minus
chr2R 16143476..16143669 599..792 98 <- Minus
chr2R 16143730..16144164 164..598 98 <- Minus
chr2R 16144238..16144400 1..163 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:15:25 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 1..1455 79..1533 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:19:31 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 1..1455 79..1533 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:20:45 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 1..1455 79..1533 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:35:28 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 1..1455 79..1533 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:54 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 1..1455 79..1533 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:47:53 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 22..1613 1..1592 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:19:31 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 22..1613 1..1592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:45 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 31..1622 1..1592 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:35:29 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 22..1613 1..1592 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:54 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 31..1622 1..1592 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:58:49 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20255886..20256035 793..942 100 <- Minus
2R 20255408..20255571 1125..1288 100 <- Minus
2R 20255628..20255809 943..1124 100 <- Minus
2R 20254987..20255138 1441..1592 100 <- Minus
2R 20255197..20255348 1289..1440 100 <- Minus
2R 20256436..20256629 599..792 100 <- Minus
2R 20256690..20257124 164..598 100 <- Minus
2R 20257198..20257360 1..163 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:58:49 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20255886..20256035 793..942 100 <- Minus
2R 20255408..20255571 1125..1288 100 <- Minus
2R 20255628..20255809 943..1124 100 <- Minus
2R 20254987..20255138 1441..1592 100 <- Minus
2R 20255197..20255348 1289..1440 100 <- Minus
2R 20256436..20256629 599..792 100 <- Minus
2R 20256690..20257124 164..598 100 <- Minus
2R 20257198..20257360 1..163 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:58:49 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20255886..20256035 793..942 100 <- Minus
2R 20255408..20255571 1125..1288 100 <- Minus
2R 20255628..20255809 943..1124 100 <- Minus
2R 20254987..20255138 1441..1592 100 <- Minus
2R 20255197..20255348 1289..1440 100 <- Minus
2R 20256436..20256629 599..792 100 <- Minus
2R 20256690..20257124 164..598 100 <- Minus
2R 20257198..20257360 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:45 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16142492..16142643 1441..1592 100 <- Minus
arm_2R 16142702..16142853 1289..1440 100 <- Minus
arm_2R 16142913..16143076 1125..1288 100 <- Minus
arm_2R 16143133..16143314 943..1124 100 <- Minus
arm_2R 16143391..16143540 793..942 100 <- Minus
arm_2R 16143941..16144134 599..792 100 <- Minus
arm_2R 16144703..16144865 1..163 100   Minus
arm_2R 16144195..16144629 164..598 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:48:51 Download gff for LD33682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20256186..20256337 1441..1592 100 <- Minus
2R 20256396..20256547 1289..1440 100 <- Minus
2R 20256607..20256770 1125..1288 100 <- Minus
2R 20256827..20257008 943..1124 100 <- Minus
2R 20257085..20257234 793..942 100 <- Minus
2R 20257635..20257828 599..792 100 <- Minus
2R 20257889..20258323 164..598 100 <- Minus
2R 20258397..20258559 1..163 100   Minus

LD33682.pep Sequence

Translation from 78 to 1532

> LD33682.pep
MSLSIVSYYGSQQSKCGYCAGANCSLSHGMHAYQLDCRDYQDLIDRGWRR
CGYYCYKLRNQETCCPCYTIKCNGLEFKLSKSNKRILRRINRFLRDGKRE
SKPEAGDGDGEADADYAIVAPEVTASEPQPQLPDKSPPVINVEQVASLAT
AQRKPTKQATAAAVEAPTLGSNKSSLLSSSAAAPISNKPCKKAKQMRLDR
RLAKLGDSASYSTKSLTQEKTLRDFLNTDSETNKHRLKLRLIHVYDDEFR
RTLPQSFALYKKYQISIHNDPPKDQDAYKEHLQATPLQNEKPWDGPEMGY
GSFHQQYWLDDKLIAVGVIDILPGCVSSVYFFYDPDYSFLSLGTYGSLRE
IELVQSLAEKVPSLKYYYMGFYIHSCPKMRYKGKLSPSYLLCPETYEWLP
LTDVIRAKLDEHKYQRLNEDPAARDVNEFLMEHLDEVKLLLGGRTRTDYK
HFRQLRGTVSDDDIIIEYSKLVGKECARRMLYVK*

LD33682.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13155-PA 537 GF13155-PA 1..534 1..483 1792 65.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20876-PA 530 GG20876-PA 1..527 1..483 2060 77.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22745-PA 536 GH22745-PA 1..533 1..483 1558 58.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
Ate1-PB 484 CG9204-PB 1..484 1..484 2576 100 Plus
Ate1-PA 477 CG9204-PA 1..477 1..484 2530 98.6 Plus
Ate1-PD 485 CG9204-PD 1..485 1..484 2366 93 Plus
Ate1-PC 478 CG9204-PC 1..478 1..484 2320 91.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18527-PA 537 GI18527-PA 1..534 1..483 1559 58.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17575-PA 495 GL17575-PA 1..492 1..483 1688 68.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24830-PB 480 GA24830-PB 1..477 1..483 1848 71.5 Plus
Dpse\GA24830-PA 531 GA24830-PA 1..528 1..483 1789 64.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Ate1-PA 528 GM19800-PA 1..528 1..484 2244 80.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Ate1-PA 528 GD25293-PA 1..528 1..484 2268 81.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21393-PA 541 GJ21393-PA 1..538 1..483 1622 60.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15677-PA 541 GK15677-PA 1..541 1..484 1585 59.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13816-PA 528 GE13816-PA 1..525 1..483 2174 78.1 Plus

LD33682.hyp Sequence

Translation from 78 to 1532

> LD33682.hyp
MSLSIVSYYGSQQSKCGYCAGANCSLSHGMHAYQLDCRDYQDLIDRGWRR
CGYYCYKLRNQETCCPCYTIKCNGLEFKLSKSNKRILRRINRFLRDGKRE
SKPEAGDGDGEADADYAIVAPEVTASEPQPQLPDKSPPVINVEQVASLAT
AQRKPTKQATAAAVEAPTLGSNKSSLLSSSAAAPISNKPCKKAKQMRLDR
RLAKLGDSASYSTKSLTQEKTLRDFLNTDSETNKHRLKLRLIHVYDDEFR
RTLPQSFALYKKYQISIHNDPPKDQDAYKEHLQATPLQNEKPWDGPEMGY
GSFHQQYWLDDKLIAVGVIDILPGCVSSVYFFYDPDYSFLSLGTYGSLRE
IELVQSLAEKVPSLKYYYMGFYIHSCPKMRYKGKLSPSYLLCPETYEWLP
LTDVIRAKLDEHKYQRLNEDPAARDVNEFLMEHLDEVKLLLGGRTRTDYK
HFRQLRGTVSDDDIIIEYSKLVGKECARRMLYVK*

LD33682.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ate1-PB 484 CG9204-PB 1..484 1..484 2576 100 Plus
Ate1-PA 477 CG9204-PA 1..477 1..484 2530 98.6 Plus
Ate1-PD 485 CG9204-PD 1..485 1..484 2366 93 Plus
Ate1-PC 478 CG9204-PC 1..478 1..484 2320 91.6 Plus