Clone LD33701 Report

Search the DGRC for LD33701

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:337
Well:1
Vector:pOT2
Associated Gene/TranscriptCG4449-RB
Protein status:LD33701.pep: gold
Preliminary Size:1522
Sequenced Size:1514

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4449 2002-01-01 Sim4 clustering to Release 2
CG4449 2002-05-18 Blastp of sequenced clone
CG4449 2003-01-01 Sim4 clustering to Release 3
CG4449 2008-04-29 Release 5.5 accounting
CG4449 2008-08-15 Release 5.9 accounting
CG4449 2008-12-18 5.12 accounting

Clone Sequence Records

LD33701.complete Sequence

1514 bp (1514 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118950

> LD33701.complete
TCTATTTGGTTTTGTGTTTGTGTTTATTGTTTGGCGCCGTTATTGGTTTA
TTACTGACTGTTACTGAGTGCCCACGATGTCCGACGACGACTGCGATATA
TTCAGTGCTGCTCGCAAGCGGATTCCCGAAATAGCTTTGCCCAAGAATCC
TTACAATCTTGGCAATGATTCCTTCTCCAAGGAGGTGGACTACGATTTCA
TTGAAGACCTCCCCAAGAAATCAACTAAAACTGGCAAACGAAAGAACCCT
GCAGCGACGCGGAAAAATCCACCCAAAAGTCAGGATGATGCTTCGCCACC
AAAACAGGCAGAACATAAGGCTGTGGAGCCAGAAGAGGATATGAGAACAG
AGCGCTCCCTATCACCGGTATCCCTGTTGATATTGGAGATGGAAAAGAAA
AATGGCCAGCAATCGGATGTGGAGAAGCACGCCAAAGAAAATGACGTTGG
TCCTGTGGCCAGACGCACACGGTCATCGTTAAATAGGTCAGAAATGGCGC
CACCACCTGTTTCACCGACTGTGGAGGTGCCCACACAGACGAAACCAAAG
AAGCGCGGCCAAAAAAAGAGAACATCTCTAACAACCACAACCAGCAACTC
TGCTTCGATGGAGGTCTCATTGCCAAGCATTCAGAACAATGAGCACATTA
GCAGACGGTGGACGTTGGCCGAAGTTGCAGCCCGTTCCAAAGTGGTGGAC
AGTATTGATCTGGTATCTGCGGTCGCTCCCCGAGTGGAGGGATTTGTTAA
TCTAGACTCTGAAGACGAGGGTGAAAAGGAGGCTCCTCCTGTCGTAGAGG
AAGAAAATATTTTTGATAACGATAATCCCACAATAGAAGTAGCTTTGTCG
TGGCTTGGCGAGATCCAGATTTATAAATTGCGGCAGCACCAAAAGTTTAA
GCATCTGTTCAAGGAGTTAGCATCACGCAATGGGATAGATGAGAATGATA
TAACGGTGGATATGTACTATAACTTCGTTGGACCTGAGGATACGCCGCAC
AGCATTGGTCTCAAATCATTTCATACGCTCACTGGCCATCCAACAAAGAG
TCACAATAATAACAACGTGGCTGCTAAAATTGACTACAATCCAGAAGCTC
TTTGCCGGAAACCTAAGAAGTTTCAAGTTAAAGTACAGGCGGATAAATGG
AAGCATCCTTTGGTGATACCCATGAAGAAAACTGATAATTTCAAAATCAT
ATTTATTAAGTGTGCTGAGGAGTTGAACTGTGATCCCCGAACCATTAAAT
TGTTTTTTGACGGTGACTTGTTGGATCCAAATGATACGCCCAATAACCAG
GATATGGAGGGCAACGAAGTTATAGATCTTAAAATAAAGGCTTAAATTTT
GAGCAAATTTATCTATTCTAGCCGAAAAATATTTTTAAAAGAAATTATAT
TAATGTTTTGTTTACGATTAGTTAATTGCTGTGCAAGATTTATTTTATTA
TCAAATGTTTCTATGTATGATTGAATATTTCTAATTTTCTTTGTAAAAAA
AAAAAAAAAAAAAA

LD33701.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4449-RB 1764 CG4449-RB 216..1710 1..1495 7475 100 Plus
CG4449-RA 1770 CG4449-RA 852..1716 631..1495 4325 100 Plus
CG4449.b 1761 CG4449.b 847..1707 635..1495 4305 100 Plus
CG4449-RA 1770 CG4449-RA 216..846 1..631 3155 100 Plus
CG4449.b 1761 CG4449.b 210..840 1..631 3155 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19074015..19074513 631..133 2495 100 Minus
chr3R 27901430 chr3R 19072852..19073091 1494..1255 1200 100 Minus
chr3R 27901430 chr3R 19073150..19073372 1254..1032 1115 100 Minus
chr3R 27901430 chr3R 19073432..19073611 1031..852 900 100 Minus
chr3R 27901430 chr3R 19074579..19074712 134..1 670 100 Minus
chr3R 27901430 chr3R 19073834..19073949 747..632 580 100 Minus
chr3R 27901430 chr3R 19073665..19073772 853..746 540 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23250606..23251104 631..133 2495 100 Minus
3R 32079331 3R 23249442..23249682 1495..1255 1205 100 Minus
3R 32079331 3R 23249741..23249963 1254..1032 1115 100 Minus
3R 32079331 3R 23250023..23250202 1031..852 900 100 Minus
3R 32079331 3R 23251167..23251300 134..1 670 100 Minus
3R 32079331 3R 23250425..23250540 747..632 580 100 Minus
3R 32079331 3R 23250256..23250363 853..746 540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22991437..22991935 631..133 2495 100 Minus
3R 31820162 3R 22990273..22990513 1495..1255 1205 100 Minus
3R 31820162 3R 22990572..22990794 1254..1032 1115 100 Minus
3R 31820162 3R 22990854..22991033 1031..852 900 100 Minus
3R 31820162 3R 22991998..22992131 134..1 670 100 Minus
3R 31820162 3R 22991256..22991371 747..632 580 100 Minus
3R 31820162 3R 22991087..22991194 853..746 540 100 Minus
Blast to na_te.dros performed 2019-03-16 02:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 5920..6033 1491..1377 122 57.4 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 4609..4713 110..3 120 62.5 Minus

LD33701.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:46:51 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19073150..19073372 1032..1254 100 <- Minus
chr3R 19073432..19073610 853..1031 100 <- Minus
chr3R 19073666..19073772 746..852 100 <- Minus
chr3R 19073836..19073949 632..745 100 <- Minus
chr3R 19074015..19074511 135..631 100 <- Minus
chr3R 19074579..19074712 1..134 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:15:28 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RA 1..1275 77..1345 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:26 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RB 1..1269 77..1345 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:13 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RB 1..1269 77..1345 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:38 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RA 1..1275 77..1345 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:19:58 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RB 1..1269 77..1345 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:19:25 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RA 178..1677 1..1494 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:26 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RB 178..1671 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:13 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RB 178..1671 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:38 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RA 178..1677 1..1494 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:19:58 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RB 178..1671 1..1494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:51 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23249443..23249682 1255..1494 100 <- Minus
3R 23249741..23249963 1032..1254 100 <- Minus
3R 23250023..23250201 853..1031 100 <- Minus
3R 23250257..23250363 746..852 100 <- Minus
3R 23250427..23250540 632..745 100 <- Minus
3R 23250606..23251102 135..631 100 <- Minus
3R 23251167..23251300 1..134 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:51 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23249443..23249682 1255..1494 100 <- Minus
3R 23249741..23249963 1032..1254 100 <- Minus
3R 23250023..23250201 853..1031 100 <- Minus
3R 23250257..23250363 746..852 100 <- Minus
3R 23250427..23250540 632..745 100 <- Minus
3R 23250606..23251102 135..631 100 <- Minus
3R 23251167..23251300 1..134 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:51 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23249443..23249682 1255..1494 100 <- Minus
3R 23249741..23249963 1032..1254 100 <- Minus
3R 23250023..23250201 853..1031 100 <- Minus
3R 23250257..23250363 746..852 100 <- Minus
3R 23250427..23250540 632..745 100 <- Minus
3R 23250606..23251102 135..631 100 <- Minus
3R 23251167..23251300 1..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:13 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19076149..19076262 632..745 100 <- Minus
arm_3R 19075463..19075685 1032..1254 100 <- Minus
arm_3R 19075745..19075923 853..1031 100 <- Minus
arm_3R 19075165..19075404 1255..1494 100 <- Minus
arm_3R 19075979..19076085 746..852 100 <- Minus
arm_3R 19076328..19076824 135..631 100 <- Minus
arm_3R 19076889..19077022 1..134 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:09:01 Download gff for LD33701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22990274..22990513 1255..1494 100 <- Minus
3R 22990572..22990794 1032..1254 100 <- Minus
3R 22990854..22991032 853..1031 100 <- Minus
3R 22991088..22991194 746..852 100 <- Minus
3R 22991258..22991371 632..745 100 <- Minus
3R 22991437..22991933 135..631 100 <- Minus
3R 22991998..22992131 1..134 100   Minus

LD33701.pep Sequence

Translation from 76 to 1344

> LD33701.pep
MSDDDCDIFSAARKRIPEIALPKNPYNLGNDSFSKEVDYDFIEDLPKKST
KTGKRKNPAATRKNPPKSQDDASPPKQAEHKAVEPEEDMRTERSLSPVSL
LILEMEKKNGQQSDVEKHAKENDVGPVARRTRSSLNRSEMAPPPVSPTVE
VPTQTKPKKRGQKKRTSLTTTTSNSASMEVSLPSIQNNEHISRRWTLAEV
AARSKVVDSIDLVSAVAPRVEGFVNLDSEDEGEKEAPPVVEEENIFDNDN
PTIEVALSWLGEIQIYKLRQHQKFKHLFKELASRNGIDENDITVDMYYNF
VGPEDTPHSIGLKSFHTLTGHPTKSHNNNNVAAKIDYNPEALCRKPKKFQ
VKVQADKWKHPLVIPMKKTDNFKIIFIKCAEELNCDPRTIKLFFDGDLLD
PNDTPNNQDMEGNEVIDLKIKA*

LD33701.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18021-PA 435 GF18021-PA 1..435 1..422 1066 53.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12448-PA 433 GG12448-PA 1..432 1..421 1552 73 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21394-PA 395 GH21394-PA 1..395 1..421 728 42.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rad60-PC 422 CG4449-PC 1..422 1..422 2208 100 Plus
Rad60-PB 422 CG4449-PB 1..422 1..422 2208 100 Plus
Rad60-PD 424 CG4449-PD 1..424 1..422 2195 99.5 Plus
Rad60-PA 424 CG4449-PA 1..424 1..422 2195 99.5 Plus
Rad60-PF 421 CG4449-PF 1..421 1..422 2191 99.8 Plus
Rad60-PE 423 CG4449-PE 1..423 1..422 2189 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10504-PA 421 GI10504-PA 1..421 1..421 812 44.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23037-PA 400 GL23037-PA 1..399 1..421 856 48.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18191-PA 400 GA18191-PA 1..399 1..421 837 47.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23580-PA 418 GM23580-PA 1..418 1..422 1731 86.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18396-PA 419 GD18396-PA 1..419 1..422 1746 87.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23185-PA 405 GJ23185-PA 1..402 1..418 844 47.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13227-PA 406 GK13227-PA 4..405 3..421 896 47.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23972-PA 428 GE23972-PA 1..427 1..421 1648 77.4 Plus

LD33701.hyp Sequence

Translation from 76 to 1344

> LD33701.hyp
MSDDDCDIFSAARKRIPEIALPKNPYNLGNDSFSKEVDYDFIEDLPKKST
KTGKRKNPAATRKNPPKSQDDASPPKQAEHKAVEPEEDMRTERSLSPVSL
LILEMEKKNGQQSDVEKHAKENDVGPVARRTRSSLNRSEMAPPPVSPTVE
VPTQTKPKKRGQKKRTSLTTTTSNSASMEVSLPSIQNNEHISRRWTLAEV
AARSKVVDSIDLVSAVAPRVEGFVNLDSEDEGEKEAPPVVEEENIFDNDN
PTIEVALSWLGEIQIYKLRQHQKFKHLFKELASRNGIDENDITVDMYYNF
VGPEDTPHSIGLKSFHTLTGHPTKSHNNNNVAAKIDYNPEALCRKPKKFQ
VKVQADKWKHPLVIPMKKTDNFKIIFIKCAEELNCDPRTIKLFFDGDLLD
PNDTPNNQDMEGNEVIDLKIKA*

LD33701.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4449-PC 422 CG4449-PC 1..422 1..422 2208 100 Plus
CG4449-PB 422 CG4449-PB 1..422 1..422 2208 100 Plus
CG4449-PD 424 CG4449-PD 1..424 1..422 2195 99.5 Plus
CG4449-PA 424 CG4449-PA 1..424 1..422 2195 99.5 Plus
CG4449-PF 421 CG4449-PF 1..421 1..422 2191 99.8 Plus