Clone LD33756 Report

Search the DGRC for LD33756

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:337
Well:56
Vector:pOT2
Associated Gene/Transcriptunk-RB
Protein status:LD33756.pep: validated not full length
Preliminary Size:4482
Sequenced Size:2710

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4620 2001-01-01 Release 2 assignment
CG4620 2001-07-04 Blastp of sequenced clone
unk 2008-04-29 Release 5.5 accounting
unk 2008-08-15 Release 5.9 accounting
unk 2008-12-18 5.12 accounting

Clone Sequence Records

LD33756.complete Sequence

2710 bp (2710 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051832

> LD33756.complete
GCAAATGAAACGAACAAGCTGCTGCTTTCCTCGCAGCAGGAAAAACCAAA
TCACTACACCTACCTGAAGGAGTTCCGCGTGGAGCAGTGCCAGTCGTTTT
TACAGCACAAGTGCAACCAGCATCGCCCCTTCGTCTGTTTCAATTGGCAT
TTTCAAAACCAGCGTCGGCGTCGTCCAGTGCGAAAACGCGATGGCACCTT
CAACTACAGTGCGGATAACTATTGCACCAAATACGACGAGACCACTGGGA
TTTGTCCCGAGGGCGACGAATGCCCCTACTTACACCGCACTGCTGGCGAC
ACCGAAAGGCGATACCATCTGCGCTACTACAAGACATGCATGTGCGTCCA
CGACACCGACAGCCGAGGATACTGCGTCAAGAATGGACTACACTGCGCCT
TCGCCCACGGCATGCAGGACCAGCGCCCACCGGTTTATGACATCAAAGAG
CTGGAGACCCTGCAGAACGCAGAGAGCACACTGGACAGCACTAATGCTTT
GAATGCCCTGGACAAGGAGCGCAATTTGATGAACGAGGATCCCAAGTGGC
AGGACACCAACTACGTGCTGGCCAATTACAAGACAGAGCCCTGCAAGCGC
CCACCGCGCCTGTGCCGCCAAGGATACGCTTGTCCACAGTACCACAATAG
CAAGGACAAACGTCGCTCGCCCAGAAAATACAAGTACAGGTCCACTCCTT
GCCCCAATGTCAAGCACGGCGAGGAATGGGGAGAACCGGGCAACTGCGAG
GCCGGCGATAACTGCCAGTACTGCCACACACGCACCGAGCAGCAGTTCCA
CCCGGAGATCTACAAGTCGACCAAGTGCAACGATGTCCAGCAGGCCGGAT
ACTGTCCGCGCAGCGTCTTCTGCGCCTTTGCCCATGTGGAACCTTGCTCA
ATGGACGATCCGCGCGAGAACTCATTGTCGGCGAGTCTGGCCAATACTAG
CTTATTAACACGTTCCTCGGCGCCAATTAACATTCCTAATACGACTCTAA
GTAACTCAATTAACGATTTTAACTCAGGTAGCTTTGCCGTCAACATTCCC
AGCAGCTCGCTCACCTACAGTCCCACCAACCATGCCAATCTCTTCAACGT
GGACGCCTTCAACTATGGCGGCTCAAACAAACTCAGCAATTCCCTTTCGG
CCACCCAGAACGATAGCAGTCTCTTCTTTCCGTCGCGCATCATATCGCCT
GGCTTTGGCGATGGCTTGTCGATTAGTCCTTCGGTAAGGATATCCGAATT
GAATACCATACGCGACGACATCAACAGCAGCTCGGTGGGAAATAGTCTGT
TCGAGAACACTCTCAATACGGCCAAGAATGCGTTTAGCCTTCAATCTCTG
CAGTCGCAAAACAACAGCGACTTGGGTCGCATCACCAATGAGCTGCTCAC
GAAGAATGCTCAAATTCACAAGTTGAACGGACGTTTCGAGGACATGGCAT
GCAAGCTAAAGATCGCGGAGCTCCATCGGGACAAGGCCAAGCAGGAGGCG
CAGGAGTGGAAGGAGCGCTATGACCTAGCACAGATACAGCTAAATTTGCC
AGCAGAGCTTCGGGACTTGTCCATACAGAAATTGAAGCAATTGCAGTCCA
AGCTGCGCACCGACTTGGAGGAGGTCGACAAAGTATTATATTTAGAAAAT
GCCAAGAAGTGCATGAAGTGCGAGGAGAACAATCGCACGGTTACTCTGGA
GCCGTGCAACCACCTGTCTATTTGCAATACATGCGCTGAATCGGTCACCG
AGTGTCCCTACTGTCAGGTGCCGGTAATAACCACCCACACCTAGAACATG
TTTTATCAGCAACAGGACCACAAGTGGCCCTTTGGCTGAAAATCGGATAG
GGATGGGAAAGGGGATTCCGATGGGATATGAATGGATCATGGGGATCAAG
ACCGCGAACAGCATGACAATGTGGTACTCACAAAGCAAACTTTAGTCTTA
AGCAAAACGTTGAAACTTTTGAACAGTTAGGATTTGACACATGCCTACTA
ATTGTGCATGTGGCAGGGAATATATAATTTATGTTTTCAATCTACTCAAA
ATATGCAAATTATCGTCATGAATATTAGTAATTACTAGGCACAAACTATT
AATTGAATTAGCTAGCTGCTCTAAACGAATAAGTATGTAATTTTATTTTT
GTTTATTTTTTCTCATATCGAATCGAATACAGGAAAAAACATTTTAAATT
GATTTTGTACTATGATTTATGTAACCAACTCTTTTAATTTTGTTTAATAT
TCAATGTTTAGGCATACATATTTTCTAATCTACTGCACGAATTTGCAATG
TCTCATTTATTTTTTTTTTAACCACATATGTATCTCTATATTTGTATTTA
AATATGCTACACTTTCAGTCATATTGTACTTTTCACTAGTATTACATAAG
AAATTATGAGAACTAAACAATTACAAGATGTAATTGAATGAAAGATATAT
AAATATATAATATATTAATTTTTCTAGACACTTTTAGCAATTGACTATTA
ACAAATTTATAGAAACCAACAAATTTAACAATATATTGTCGCATAGAAGA
GCAGAAAACAACCACAAACAAACAAATACCACCAGTGATTTTATATAAGC
CGATTTTCAAACTGTATTTTTTATGTATGTGTTTCAAACTTGTGAATGCA
AACTACAACTAAAAGCCAAGACAATGGTCATAAAATCAATGTAAAAAAAA
AAAAAAAAAA

LD33756.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
unk.a 2957 unk.a 1154..2955 893..2694 9010 100 Plus
unk.f 4197 unk.f 1154..2955 893..2694 9010 100 Plus
unk.k 3834 unk.k 1154..2955 893..2694 9010 100 Plus
unk.a 2957 unk.a 43..950 1..908 4495 99.6 Plus
unk.f 4197 unk.f 43..950 1..908 4495 99.6 Plus
unk.k 3834 unk.k 43..950 1..908 4495 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18976478..18977575 2692..1595 5445 99.7 Minus
chr3R 27901430 chr3R 18977630..18978211 1596..1015 2880 99.7 Minus
chr3R 27901430 chr3R 18979510..18979931 691..270 2065 99.3 Minus
chr3R 27901430 chr3R 18980937..18981146 269..60 1050 100 Minus
chr3R 27901430 chr3R 18979246..18979450 892..688 1025 100 Minus
chr3R 27901430 chr3R 18978281..18978403 1015..893 615 100 Minus
chr3R 27901430 chr3R 18981215..18981273 59..1 295 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23153040..23154139 2694..1595 5500 100 Minus
3R 32079331 3R 23154194..23154775 1596..1015 2910 100 Minus
3R 32079331 3R 23156072..23156493 691..270 2110 100 Minus
3R 32079331 3R 23157501..23157710 269..60 1050 100 Minus
3R 32079331 3R 23155809..23156013 892..688 1025 100 Minus
3R 32079331 3R 23154845..23154967 1015..893 615 100 Minus
3R 32079331 3R 23157779..23157837 59..1 295 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22893871..22894970 2694..1595 5500 100 Minus
3R 31820162 3R 22895025..22895606 1596..1015 2910 100 Minus
3R 31820162 3R 22896903..22897324 691..270 2110 100 Minus
3R 31820162 3R 22898332..22898541 269..60 1050 100 Minus
3R 31820162 3R 22896640..22896844 892..688 1025 100 Minus
3R 31820162 3R 22895676..22895798 1015..893 615 100 Minus
3R 31820162 3R 22898610..22898668 59..1 295 100 Minus
Blast to na_te.dros performed 2019-03-16 02:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3557..3957 2550..2138 143 53.6 Minus
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 2..135 2319..2191 119 58.1 Minus

LD33756.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:47:14 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18976478..18977573 1597..2692 97 <- Minus
chr3R 18977630..18978210 1016..1596 99 <- Minus
chr3R 18978281..18978403 893..1015 100 <- Minus
chr3R 18979246..18979448 690..892 100 <- Minus
chr3R 18979512..18979931 270..689 99 <- Minus
chr3R 18980937..18981146 60..269 100 <- Minus
chr3R 18981215..18981273 1..59 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:15:34 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
unk-RB 7..1800 1..1794 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:18:51 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
unk-RB 7..1800 1..1794 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:16 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
unk-RB 7..1800 1..1794 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:27 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
unk-RB 7..1800 1..1794 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:20:36 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
unk-RB 7..1800 1..1794 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:14:20 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
unk-RB 34..2725 1..2692 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:18:51 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
unk-RB 34..2725 1..2692 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:16 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
unk-RB 26..2717 1..2692 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:27 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
unk-RB 34..2725 1..2692 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:20:36 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
unk-RB 26..2717 1..2692 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:14 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23153042..23154137 1597..2692 100 <- Minus
3R 23154194..23154774 1016..1596 100 <- Minus
3R 23154845..23154967 893..1015 100 <- Minus
3R 23155809..23156011 690..892 100 <- Minus
3R 23156074..23156493 270..689 100 <- Minus
3R 23157501..23157710 60..269 100 <- Minus
3R 23157779..23157837 1..59 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:14 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23153042..23154137 1597..2692 100 <- Minus
3R 23154194..23154774 1016..1596 100 <- Minus
3R 23154845..23154967 893..1015 100 <- Minus
3R 23155809..23156011 690..892 100 <- Minus
3R 23156074..23156493 270..689 100 <- Minus
3R 23157501..23157710 60..269 100 <- Minus
3R 23157779..23157837 1..59 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:14 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23153042..23154137 1597..2692 100 <- Minus
3R 23154194..23154774 1016..1596 100 <- Minus
3R 23154845..23154967 893..1015 100 <- Minus
3R 23155809..23156011 690..892 100 <- Minus
3R 23156074..23156493 270..689 100 <- Minus
3R 23157501..23157710 60..269 100 <- Minus
3R 23157779..23157837 1..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:16 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18980567..18980689 893..1015 100 <- Minus
arm_3R 18981531..18981733 690..892 100 <- Minus
arm_3R 18979916..18980496 1016..1596 100 <- Minus
arm_3R 18978764..18979859 1597..2692 100 <- Minus
arm_3R 18981796..18982215 270..689 100 <- Minus
arm_3R 18983223..18983432 60..269 100 <- Minus
arm_3R 18983501..18983559 1..59 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:28:45 Download gff for LD33756.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22893873..22894968 1597..2692 100 <- Minus
3R 22895025..22895605 1016..1596 100 <- Minus
3R 22895676..22895798 893..1015 100 <- Minus
3R 22896640..22896842 690..892 100 <- Minus
3R 22896905..22897324 270..689 100 <- Minus
3R 22898332..22898541 60..269 100 <- Minus
3R 22898610..22898668 1..59 100   Minus

LD33756.pep Sequence

Translation from 0 to 1793

> LD33756.pep
ANETNKLLLSSQQEKPNHYTYLKEFRVEQCQSFLQHKCNQHRPFVCFNWH
FQNQRRRRPVRKRDGTFNYSADNYCTKYDETTGICPEGDECPYLHRTAGD
TERRYHLRYYKTCMCVHDTDSRGYCVKNGLHCAFAHGMQDQRPPVYDIKE
LETLQNAESTLDSTNALNALDKERNLMNEDPKWQDTNYVLANYKTEPCKR
PPRLCRQGYACPQYHNSKDKRRSPRKYKYRSTPCPNVKHGEEWGEPGNCE
AGDNCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRSVFCAFAHVEPCS
MDDPRENSLSASLANTSLLTRSSAPINIPNTTLSNSINDFNSGSFAVNIP
SSSLTYSPTNHANLFNVDAFNYGGSNKLSNSLSATQNDSSLFFPSRIISP
GFGDGLSISPSVRISELNTIRDDINSSSVGNSLFENTLNTAKNAFSLQSL
QSQNNSDLGRITNELLTKNAQIHKLNGRFEDMACKLKIAELHRDKAKQEA
QEWKERYDLAQIQLNLPAELRDLSIQKLKQLQSKLRTDLEEVDKVLYLEN
AKKCMKCEENNRTVTLEPCNHLSICNTCAESVTECPYCQVPVITTHT*

LD33756.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18028-PA 595 GF18028-PA 3..595 3..597 3113 96.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12456-PA 599 GG12456-PA 3..599 1..597 3208 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23839-PA 484 GH23839-PA 2..467 1..468 2288 92.3 Plus
Dgri\GH23844-PA 110 GH23844-PA 7..110 494..597 495 90.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
unk-PE 599 CG4620-PE 3..599 1..597 3245 100 Plus
unk-PC 599 CG4620-PC 3..599 1..597 3245 100 Plus
unk-PB 599 CG4620-PB 3..599 1..597 3245 100 Plus
unk-PA 599 CG4620-PA 3..599 1..597 3245 100 Plus
unk-PF 600 CG4620-PF 3..600 1..597 3233 99.8 Plus
unk-PG 673 CG4620-PG 3..673 1..597 2930 83.5 Plus
unk-PD 672 CG4620-PD 3..672 1..597 2929 83.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24572-PA 596 GI24572-PA 2..596 1..597 2910 91.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23594-PA 596 GL23594-PA 2..596 1..597 3016 94.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18308-PA 596 GA18308-PA 2..596 1..597 3016 94.8 Plus
Dpse\GA18308-PB 555 GA18308-PB 2..555 1..597 2761 88.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23588-PA 614 GM23588-PA 18..614 1..597 3216 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18402-PA 581 GD18402-PA 3..558 1..559 2903 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22639-PA 592 GJ22639-PA 2..592 1..597 2902 92 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12832-PA 604 GK12832-PA 4..604 3..597 2985 94 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23979-PA 599 GE23979-PA 3..599 1..597 3200 98.8 Plus

LD33756.hyp Sequence

Translation from 0 to 1793

> LD33756.hyp
ANETNKLLLSSQQEKPNHYTYLKEFRVEQCQSFLQHKCNQHRPFVCFNWH
FQNQRRRRPVRKRDGTFNYSADNYCTKYDETTGICPEGDECPYLHRTAGD
TERRYHLRYYKTCMCVHDTDSRGYCVKNGLHCAFAHGMQDQRPPVYDIKE
LETLQNAESTLDSTNALNALDKERNLMNEDPKWQDTNYVLANYKTEPCKR
PPRLCRQGYACPQYHNSKDKRRSPRKYKYRSTPCPNVKHGEEWGEPGNCE
AGDNCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRSVFCAFAHVEPCS
MDDPRENSLSASLANTSLLTRSSAPINIPNTTLSNSINDFNSGSFAVNIP
SSSLTYSPTNHANLFNVDAFNYGGSNKLSNSLSATQNDSSLFFPSRIISP
GFGDGLSISPSVRISELNTIRDDINSSSVGNSLFENTLNTAKNAFSLQSL
QSQNNSDLGRITNELLTKNAQIHKLNGRFEDMACKLKIAELHRDKAKQEA
QEWKERYDLAQIQLNLPAELRDLSIQKLKQLQSKLRTDLEEVDKVLYLEN
AKKCMKCEENNRTVTLEPCNHLSICNTCAESVTECPYCQVPVITTHT*

LD33756.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
unk-PE 599 CG4620-PE 3..599 1..597 3245 100 Plus
unk-PC 599 CG4620-PC 3..599 1..597 3245 100 Plus
unk-PB 599 CG4620-PB 3..599 1..597 3245 100 Plus
unk-PA 599 CG4620-PA 3..599 1..597 3245 100 Plus
unk-PF 600 CG4620-PF 3..600 1..597 3233 99.8 Plus