Clone LD33793 Report

Search the DGRC for LD33793

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:337
Well:93
Vector:pOT2
Associated Gene/TranscriptCG8379-RB
Protein status:LD33793.pep: gold
Sequenced Size:2443

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8379-RB 2011-02-22 Manual selection by Sue Celniker

Clone Sequence Records

LD33793.complete Sequence

2443 bp assembled on 2011-06-10

GenBank Submission: BT128739.1

> LD33793.complete
ATTGCCCATCCACAAATTCTGCCAACTTCCGATATATTTTTACAGCAGCA
GACTATGAGTTTCTGAAACTAGTCCCCTAGGTCAATAATATCCACATCCA
GTCATGACCTCTCGCAAGCGCAGTGGCAGCGGCTCCACCAAGCGGCCCAA
GGAGAAGGTGGTCTATATATATGAGCTGTTGTGCCGGGGCGAGGATCCCA
GCAGCGAGAGTCCCGAATTTTGGAACGAGTTCTTCCTGCTGCAGCCGAAC
TTCGAGGCGCTGGAGAATGAGATTGGCAAACTCAACAACGAGCAGCTGCA
GCTGGTGAAACCGAACCTGAACACCCTCTTCCAGAGGTGCATCGAAATGC
TTGACACGGAAGATCATCCTAAGCGGCTGTGCAACAGCCTACACACGCTG
TGCTCCCTGTTCTACGGGATCTTTAAGAAGTCCAACGCAGAACCAACATT
AAACATCCTAAACGAGATCTTCGGCCATGAGAAGATGGACGAATGGCTGA
AGCTACTCATGCAGTACTGCAATCGCATCCTCCTGGGCGATGTGCCCGAA
AACGCTCGATTTATGTGCCTCAAACTGCTGCAGGTTCTGGTTACGGGCAC
GGATAACGTCAACCAGAACGCCCTCTTCGAGCATCTAATGATGCACAGCA
TGTTCGACGCCTTTGTTCGGCTACTCAGTGATCCTACGTTCCGTAGCCAG
CATGGACACGACATCGTTATCCTACTTACTATCCTGGTCAACTATCGCAA
GCATGAAGCCACTAACCCCTATGTGGTGCAGCTCTCCATACTCGCTGATG
AGCTGGCTTTAAATGGCTATGGCCAAATGATATCGCAATCGCTAATTGAT
TTCTGTCGCCAGTACATTCAGAGCCTTAACAATGTGCAATCCTCTTCCTG
GTTTTCGTCGCTGTCGAATATTGTGGGCAACATGTTTGTGTCGGATGAAG
GATGCGAACGGGTGCAGCAGATCAAGGCGAATAATGGCCTTCTACTTGCC
CTCTACGAGGCAGTGCACCTGAATCGGAACTTCATCACAACTCTGGCTCA
CACGCAGGCAGAGTCCAGTGCCCCGCCCTCGCCCAGTAACACATTGAGTC
TGGCCCAACCTGTGCCGGATCTATCTAATGCACCCATCATTGACATTACG
CAGTATCCCACCAATCTGCTGGTGGCCGTATTTCAGTACTGTTCCATCGT
GATGCAGGACAATAAGAACGAATCGAGCATTGCTAATCTGAAGCTGTGTT
TCCTCATCCTCACCTGCATTTCCGAGGACCAGTACGCCAACTCCATGATG
CACGACAGCAATCTTACCTTCAAAGTCATGCTGCATCGGGCGCAGATGCG
TCATCGCAAGCTGAATGTGGATCGGGTGGGCAAGTCCCAGCCTTTGGCTG
CCACTCTACTGGACCTCCTGGTGGAGTTCATTGTATCGCATTTGATGAAA
AAGTTCCCGATGGAGCTGTATCTGCTCTGCATTGGAGTTATCCATCGAAT
CTTGTGCTATCAAAAGAGATGTAGAGTGCGGCTCAATTATCCGTGGAAGG
AACTTTGGTCGGCTCTCATTGGTCTTCTGCGGTTCTTGGTCAACCAAGAA
CAGACGCTGGTTAAAAAGTGCAACATTTTTCATCTGTCGCTACAGGTGGT
GAATATATTTAATCTGTTTATTACGTACGGTGATACTTTCCTGGCCACAA
CAAATAGCTATGATGAGCTCTACTACGAACTGAACCGCGAGGAGAAGGTA
TTTACGGAAATACATGCCATGGTTCTTCGCTATACAACGATGCCGGACTG
CGAATACAAAGACGATGTAATCAAGCTCTTAAACGCTTTGGTAAATATCC
TGGCCATTGTTAAGCACTTTCAGAACAAGATCAAGGAATGGCTGGCCGAA
CAAGGCCTCTCTACGCCCACGGAGGAGCAGATACTCGACGTGGTGCGCAA
GAACTACGACCTAACGCTCAAACTGCAGGACTCCCTGGACCAATACGAAC
GTTACACAGAAACGCCGCTGCACACCAACTTCTTTAAGTTGATGGTTCGC
GATGTTGTCAACGATACGCGCAAGCACATCTACGGCTATGTGAAGGAGGC
AGTATCTGTTATTCCGGACCAGGAAATTCTCCTCAGTTCCTCTATGACAT
CCGTTTCGGCCGGTACAGCCACTCCGGCTTCAGCAACAGCAGTGCCAGAA
GCAAAAGCGTTGCCTTCTTTTGCTTAGTTTTGTAATTATATTTTAAATAT
TCAAATCTCTGGATGCGTAAACTCGATGTAATCTATAAGATTTAAAGTGC
TTTGCGAGACTTTTATAGCTAAAACAGTGCACTTAAAGCAAAAACATATT
CTGTGCAAGTTTTTTACACAAGTATACAAAATATATAAATATTACGTGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD33793.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4651591..4652547 816..1772 4785 100 Plus
chr3R 27901430 chr3R 4652601..4653228 1772..2399 3140 100 Plus
chr3R 27901430 chr3R 4650910..4651367 359..816 2290 100 Plus
chr3R 27901430 chr3R 4650645..4650848 156..359 1020 100 Plus
chr3R 27901430 chr3R 4650411..4650569 1..159 795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8825632..8826588 816..1772 4785 100 Plus
3R 32079331 3R 8826642..8827277 1772..2407 3150 99.7 Plus
3R 32079331 3R 8824951..8825408 359..816 2290 100 Plus
3R 32079331 3R 8824686..8824889 156..359 1020 100 Plus
3R 32079331 3R 8824452..8824610 1..159 795 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8566463..8567419 816..1772 4785 100 Plus
3R 31820162 3R 8567473..8568108 1772..2407 3150 99.6 Plus
3R 31820162 3R 8565782..8566239 359..816 2290 100 Plus
3R 31820162 3R 8565517..8565720 156..359 1020 100 Plus
3R 31820162 3R 8565283..8565441 1..159 795 100 Plus
Blast to na_te.dros performed on 2019-03-15 10:41:57 has no hits.

LD33793.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:42:49 Download gff for LD33793.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4650411..4650567 1..157 100 -> Plus
chr3R 4650647..4650848 158..359 100 -> Plus
chr3R 4650911..4651367 360..816 100 -> Plus
chr3R 4651592..4652547 817..1772 100 -> Plus
chr3R 4652602..4653228 1773..2399 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-06-10 09:18:02 Download gff for LD33793.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RB 1..2124 104..2227 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:23:02 Download gff for LD33793.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RB 1..2124 104..2227 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:09:43 Download gff for LD33793.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RB 1..2124 104..2227 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-10 09:18:02 Download gff for LD33793.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RB 43..2441 1..2399 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:23:02 Download gff for LD33793.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RB 42..2440 1..2399 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:43 Download gff for LD33793.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RB 42..2440 1..2399 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:49 Download gff for LD33793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8824452..8824608 1..157 100 -> Plus
3R 8824688..8824889 158..359 100 -> Plus
3R 8824952..8825408 360..816 100 -> Plus
3R 8825633..8826588 817..1772 100 -> Plus
3R 8826643..8827269 1773..2399 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:49 Download gff for LD33793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8824452..8824608 1..157 100 -> Plus
3R 8824688..8824889 158..359 100 -> Plus
3R 8824952..8825408 360..816 100 -> Plus
3R 8825633..8826588 817..1772 100 -> Plus
3R 8826643..8827269 1773..2399 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:49 Download gff for LD33793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8824452..8824608 1..157 100 -> Plus
3R 8824688..8824889 158..359 100 -> Plus
3R 8824952..8825408 360..816 100 -> Plus
3R 8825633..8826588 817..1772 100 -> Plus
3R 8826643..8827269 1773..2399 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:23:02 Download gff for LD33793.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4650674..4651130 360..816 100 -> Plus
arm_3R 4650174..4650330 1..157 100 -> Plus
arm_3R 4650410..4650611 158..359 100 -> Plus
arm_3R 4651355..4652310 817..1772 100 -> Plus
arm_3R 4652365..4652991 1773..2399 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:08:09 Download gff for LD33793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8565519..8565720 158..359 100 -> Plus
3R 8565783..8566239 360..816 100 -> Plus
3R 8566464..8567419 817..1772 100 -> Plus
3R 8567474..8568100 1773..2399 100   Plus
3R 8565283..8565439 1..157 100 -> Plus

LD33793.pep Sequence

Translation from 103 to 2226

> LD33793.pep
MTSRKRSGSGSTKRPKEKVVYIYELLCRGEDPSSESPEFWNEFFLLQPNF
EALENEIGKLNNEQLQLVKPNLNTLFQRCIEMLDTEDHPKRLCNSLHTLC
SLFYGIFKKSNAEPTLNILNEIFGHEKMDEWLKLLMQYCNRILLGDVPEN
ARFMCLKLLQVLVTGTDNVNQNALFEHLMMHSMFDAFVRLLSDPTFRSQH
GHDIVILLTILVNYRKHEATNPYVVQLSILADELALNGYGQMISQSLIDF
CRQYIQSLNNVQSSSWFSSLSNIVGNMFVSDEGCERVQQIKANNGLLLAL
YEAVHLNRNFITTLAHTQAESSAPPSPSNTLSLAQPVPDLSNAPIIDITQ
YPTNLLVAVFQYCSIVMQDNKNESSIANLKLCFLILTCISEDQYANSMMH
DSNLTFKVMLHRAQMRHRKLNVDRVGKSQPLAATLLDLLVEFIVSHLMKK
FPMELYLLCIGVIHRILCYQKRCRVRLNYPWKELWSALIGLLRFLVNQEQ
TLVKKCNIFHLSLQVVNIFNLFITYGDTFLATTNSYDELYYELNREEKVF
TEIHAMVLRYTTMPDCEYKDDVIKLLNALVNILAIVKHFQNKIKEWLAEQ
GLSTPTEEQILDVVRKNYDLTLKLQDSLDQYERYTETPLHTNFFKLMVRD
VVNDTRKHIYGYVKEAVSVIPDQEILLSSSMTSVSAGTATPASATAVPEA
KALPSFA*

LD33793.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17691-PA 704 GF17691-PA 12..676 12..677 3448 97.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13434-PA 707 GG13434-PA 1..707 1..707 3773 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23943-PA 705 GH23943-PA 1..678 1..677 3341 92.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8379-PB 707 CG8379-PB 1..707 1..707 3660 100 Plus
CG8379-PA 706 CG8379-PA 1..706 1..707 3643 99.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10054-PA 693 GI10054-PA 1..678 1..677 3367 93.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21552-PA 719 GL21552-PA 1..684 1..684 3462 95.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21032-PA 719 GA21032-PA 1..681 1..683 3466 95.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23769-PA 707 GM23769-PA 1..707 1..707 3776 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18579-PA 706 GD18579-PA 1..706 1..707 3532 95.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23789-PA 693 GJ23789-PA 1..693 1..695 3362 91.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11970-PA 720 GK11970-PA 1..690 1..692 3429 92.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25913-PA 707 GE25913-PA 1..707 1..707 3776 99.2 Plus

LD33793.hyp Sequence

Translation from 103 to 2226

> LD33793.hyp
MTSRKRSGSGSTKRPKEKVVYIYELLCRGEDPSSESPEFWNEFFLLQPNF
EALENEIGKLNNEQLQLVKPNLNTLFQRCIEMLDTEDHPKRLCNSLHTLC
SLFYGIFKKSNAEPTLNILNEIFGHEKMDEWLKLLMQYCNRILLGDVPEN
ARFMCLKLLQVLVTGTDNVNQNALFEHLMMHSMFDAFVRLLSDPTFRSQH
GHDIVILLTILVNYRKHEATNPYVVQLSILADELALNGYGQMISQSLIDF
CRQYIQSLNNVQSSSWFSSLSNIVGNMFVSDEGCERVQQIKANNGLLLAL
YEAVHLNRNFITTLAHTQAESSAPPSPSNTLSLAQPVPDLSNAPIIDITQ
YPTNLLVAVFQYCSIVMQDNKNESSIANLKLCFLILTCISEDQYANSMMH
DSNLTFKVMLHRAQMRHRKLNVDRVGKSQPLAATLLDLLVEFIVSHLMKK
FPMELYLLCIGVIHRILCYQKRCRVRLNYPWKELWSALIGLLRFLVNQEQ
TLVKKCNIFHLSLQVVNIFNLFITYGDTFLATTNSYDELYYELNREEKVF
TEIHAMVLRYTTMPDCEYKDDVIKLLNALVNILAIVKHFQNKIKEWLAEQ
GLSTPTEEQILDVVRKNYDLTLKLQDSLDQYERYTETPLHTNFFKLMVRD
VVNDTRKHIYGYVKEAVSVIPDQEILLSSSMTSVSAGTATPASATAVPEA
KALPSFA*

LD33793.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8379-PB 707 CG8379-PB 1..707 1..707 3660 100 Plus
CG8379-PA 706 CG8379-PA 1..706 1..707 3643 99.9 Plus