Clone LD33831 Report

Search the DGRC for LD33831

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:338
Well:31
Vector:pOT2
Associated Gene/TranscripteIF-4B-RB
Protein status:LD33831.pep: gold
Preliminary Size:1646
Sequenced Size:1485

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10837 2004-06-20 Blastp of sequenced clone
eIF-4B 2008-04-29 Release 5.5 accounting
eIF-4B 2008-08-15 Release 5.9 accounting
eIF-4B 2008-12-18 5.12 accounting

Clone Sequence Records

LD33831.complete Sequence

1485 bp (1485 high quality bases) assembled on 2004-06-20

GenBank Submission: BT015266

> LD33831.complete
TCAAAATTAAAGATTGGAAACATTGGTTGAAATGGCGTCCGCAGGAAAGA
AGGGCAAAAAGAATAAAGGAACAGTTATCTCCTTGCAATCATTTCTATGT
AATTCTGACGCTCCAGTCGGAACAACCCAAGTCTCAAAAAAAATACGAAA
TTTAGATGGCGATGATAGCGATGATGGAAGTGGTACATTGCCGTTGGTTT
ATCAGCTTCCAACCGCTCCGAGGGCAAATCGGATATTCGACGATAATTCT
ATTCCTCATAAAGCCCCATTTATTGCTTATATCAATAATTTACCATTTGA
CGCAAATGAAGATGACCTCTACGAGTTCTTTGAAGGTATTAATTTAATAT
CTCTGAGACTACCAAGAGAAGATGGCGAAAATGGTCGTTCCAGAGGCTTT
GGCTATGTGGAGTTGGAAAATCGAGAGGATTTAATTCATGTACTTAGCTT
GCCAGACCCCTCTATTAAAGGTCGCCGCATTCGCATTGAGCTATCGAATG
AAAACGACCAGCAAAGCCGCCAAAAAAGTAATAGGCGGTTTGATGGTTTT
GGAAATAATGGAGATAATAGGGATTCCGGAAATTGGAGGCGAGACAGCCA
AAACAACGGCAGTAACTTTGGTTATTCTTCCAATTTTGAAAGAAGCTTTA
ATAGAGAGAGAAAATCTTTACCAGATAGAGATGATGTGAACACTCCTGGA
TCTTGGCGCACGAGCGCAAGGCCGCAATCTATTGATACTTCCCCTACACG
CAGAGAAGTTGAACAAGTATCTGAAAAATATCGCGAAGGTCGAGTCAAAA
TAGCAGACAGATATTCCCGAGAAGAGACATCCAAAGTTGAAGAAGAAAGG
CCAAAATTGAATTTAAAACCAAGAACTTTACCATTGCCAGATGTAAAGAC
AATTGAATTCGAAAAATGTGACGTTGATGAATTTAATTTGGATAAACAAG
GCGGAACTTCATCATTAAACGTGTTTGGGTCTGCAAAACCGGTAGATACA
GCAGCAAGGGAGTTGGAGATTGAGCAAAGATTGGCTCTCGCTCGAAAACA
GGATAAGGGGCGCAGAGAACAGGGTTTAAATGAAAAACTTGCCGAGCTCC
AGGTGGATAAAAATGATAATGAAAGTCTAAGTGCAACAGTTAGTTGGCGC
ACGAATCAGGACTACAAGGAAAGCGACAAAATTAATAAGTGTCCAGGTGA
AAAACAGCGGGACGAGGAAATCCATAGATTGAATCATGCCCGAGGCCAGT
TTAACAGGCCGGAACTTTTGAGAGAAAAACCTAATGCGAACGGAGAGAGC
AAACGAGATTGTCGCAATGACCGTTCTGTGTCGAAGAAAACTTCCCAGAA
TGATCTTGTTTTGCAATCATCTAATAAATATTCAGGACTCGACAATGAAG
GATCGGAATAATATATTTGTGTTTCTTAAAAATAAATAAAAATAAAGAAA
ATATATAAATCTATGACAAAAAAAAAAAAAAAAAA

LD33831.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4B-RB 1640 eIF-4B-RB 78..1547 1..1470 7350 100 Plus
eIF-4B-RA 1873 eIF-4B-RA 73..1270 1..1198 5990 100 Plus
eIF-4B.a 1568 eIF-4B.a 67..1263 1..1197 5985 100 Plus
eIF-4B.a 1568 eIF-4B.a 1260..1475 1255..1470 1080 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2RHet 3288813 chr2RHet 2902154..2903310 42..1198 5785 100 Plus
chr2RHet 3288813 chr2RHet 2917314..2917423 1358..1467 550 100 Plus
chr2RHet 3288813 chr2RHet 2915486..2915589 1256..1359 520 100 Plus
chr2RHet 3288813 chr2RHet 2912604..2912668 1194..1258 325 100 Plus
chr2RHet 3288813 chr2RHet 2901858..2901902 1..45 225 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27547693..27548849 1198..42 5785 100 Minus
3L 28110227 3L 27856782..27857938 1198..42 5785 100 Minus
3L 28110227 3L 27533577..27533689 1470..1358 565 100 Minus
3L 28110227 3L 27842666..27842778 1470..1358 565 100 Minus
3L 28110227 3L 27535414..27535517 1359..1256 520 100 Minus
3L 28110227 3L 27844503..27844606 1359..1256 520 100 Minus
3L 28110227 3L 27538335..27538399 1258..1194 325 100 Minus
3L 28110227 3L 27847424..27847488 1258..1194 325 100 Minus
3L 28110227 3L 27549101..27549145 45..1 225 100 Minus
3L 28110227 3L 27858190..27858234 45..1 225 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 27849882..27851038 1198..42 5785 100 Minus
3L 28103327 3L 27540793..27541949 1198..42 5785 100 Minus
3L 28103327 3L 27835766..27835878 1470..1358 565 100 Minus
3L 28103327 3L 27526677..27526789 1470..1358 565 100 Minus
3L 28103327 3L 27837603..27837706 1359..1256 520 100 Minus
3L 28103327 3L 27528514..27528617 1359..1256 520 100 Minus
3L 28103327 3L 27840524..27840588 1258..1194 325 100 Minus
3L 28103327 3L 27531435..27531499 1258..1194 325 100 Minus
3L 28103327 3L 27851290..27851334 45..1 225 100 Minus
3L 28103327 3L 27542201..27542245 45..1 225 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:02:09 has no hits.

LD33831.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:03:15 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
chr2RHet 2901858..2901901 1..44 100 -> Plus
chr2RHet 2902157..2903308 45..1196 100 -> Plus
chr2RHet 2912607..2912667 1197..1257 100 -> Plus
chr2RHet 2915488..2915587 1258..1357 100 -> Plus
chr2RHet 2917314..2917381 1358..1425 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:44:58 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RB 1..1380 32..1411 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:36:01 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RB 1..1380 32..1411 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:08:17 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RB 1..1380 32..1411 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:19:53 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RB 1..1380 32..1411 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:33 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RB 1..1380 32..1411 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:57 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RB 44..1468 1..1425 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:36:01 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RB 44..1468 1..1425 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:17 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RB 38..1504 1..1467 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:19:53 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RB 44..1468 1..1425 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:33 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RB 38..1504 1..1467 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:15 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27535416..27535515 1258..1357 100 <- Minus
3L 27538336..27538396 1197..1257 100 <- Minus
3L 27533580..27533689 1358..1467 100 <- Minus
3L 27547695..27548846 45..1196 100 <- Minus
3L 27549102..27549145 1..44 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:15 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27535416..27535515 1258..1357 100 <- Minus
3L 27538336..27538396 1197..1257 100 <- Minus
3L 27533580..27533689 1358..1467 100 <- Minus
3L 27547695..27548846 45..1196 100 <- Minus
3L 27549102..27549145 1..44 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:15 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27535416..27535515 1258..1357 100 <- Minus
3L 27538336..27538396 1197..1257 100 <- Minus
3L 27533580..27533689 1358..1467 100 <- Minus
3L 27547695..27548846 45..1196 100 <- Minus
3L 27549102..27549145 1..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:17 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
2RHet 2901795..2901838 1..44 100 -> Plus
2RHet 2902094..2903245 45..1196 100 -> Plus
2RHet 2912544..2912604 1197..1257 100 -> Plus
2RHet 2915425..2915524 1258..1357 100 -> Plus
2RHet 2917251..2917360 1358..1467 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:57:08 Download gff for LD33831.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27540795..27541946 45..1196 100 <- Minus
3L 27542202..27542245 1..44 100   Minus
3L 27526680..27526789 1358..1467 100 <- Minus
3L 27528516..27528615 1258..1357 100 <- Minus
3L 27531436..27531496 1197..1257 100 <- Minus

LD33831.hyp Sequence

Translation from 31 to 1410

> LD33831.hyp
MASAGKKGKKNKGTVISLQSFLCNSDAPVGTTQVSKKIRNLDGDDSDDGS
GTLPLVYQLPTAPRANRIFDDNSIPHKAPFIAYINNLPFDANEDDLYEFF
EGINLISLRLPREDGENGRSRGFGYVELENREDLIHVLSLPDPSIKGRRI
RIELSNENDQQSRQKSNRRFDGFGNNGDNRDSGNWRRDSQNNGSNFGYSS
NFERSFNRERKSLPDRDDVNTPGSWRTSARPQSIDTSPTRREVEQVSEKY
REGRVKIADRYSREETSKVEEERPKLNLKPRTLPLPDVKTIEFEKCDVDE
FNLDKQGGTSSLNVFGSAKPVDTAARELEIEQRLALARKQDKGRREQGLN
EKLAELQVDKNDNESLSATVSWRTNQDYKESDKINKCPGEKQRDEEIHRL
NHARGQFNRPELLREKPNANGESKRDCRNDRSVSKKTSQNDLVLQSSNKY
SGLDNEGSE*

LD33831.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4B-PB 459 CG10837-PB 1..459 1..459 2393 100 Plus
eIF-4B-PA 390 CG10837-PA 1..389 1..389 2028 100 Plus
eIF-4B-PF 392 CG10837-PF 1..389 1..389 2028 100 Plus
eIF-4B-PE 389 CG10837-PE 1..388 1..388 2022 100 Plus

LD33831.pep Sequence

Translation from 31 to 1410

> LD33831.pep
MASAGKKGKKNKGTVISLQSFLCNSDAPVGTTQVSKKIRNLDGDDSDDGS
GTLPLVYQLPTAPRANRIFDDNSIPHKAPFIAYINNLPFDANEDDLYEFF
EGINLISLRLPREDGENGRSRGFGYVELENREDLIHVLSLPDPSIKGRRI
RIELSNENDQQSRQKSNRRFDGFGNNGDNRDSGNWRRDSQNNGSNFGYSS
NFERSFNRERKSLPDRDDVNTPGSWRTSARPQSIDTSPTRREVEQVSEKY
REGRVKIADRYSREETSKVEEERPKLNLKPRTLPLPDVKTIEFEKCDVDE
FNLDKQGGTSSLNVFGSAKPVDTAARELEIEQRLALARKQDKGRREQGLN
EKLAELQVDKNDNESLSATVSWRTNQDYKESDKINKCPGEKQRDEEIHRL
NHARGQFNRPELLREKPNANGESKRDCRNDRSVSKKTSQNDLVLQSSNKY
SGLDNEGSE*

LD33831.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10934-PA 387 GG10934-PA 1..387 79..459 1624 86.2 Plus
Dere\GG15497-PA 280 GG15497-PA 76..169 74..173 155 31 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18041-PA 405 GH18041-PA 1..403 1..391 1205 68 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4B-PB 459 CG10837-PB 1..459 1..459 2393 100 Plus
eIF4B-PF 392 CG10837-PF 1..389 1..389 2028 100 Plus
eIF4B-PA 390 CG10837-PA 1..389 1..389 2028 100 Plus
eIF4B-PE 389 CG10837-PE 1..388 1..388 2022 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23629-PA 184 GI23629-PA 2..184 274..459 304 43.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18125-PA 461 GE18125-PA 10..461 14..459 2007 87.3 Plus
Dyak\GE21806-PA 281 GE21806-PA 76..154 74..155 148 32.9 Plus