Clone LD33852 Report

Search the DGRC for LD33852

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:338
Well:52
Vector:pOT2
Associated Gene/Transcriptmdy-RA
Protein status:LD33852.pep: gold
Preliminary Size:2170
Sequenced Size:2074

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13273 2001-01-01 Release 2 assignment
CG31991 2001-07-04 Blastp of sequenced clone
CG31991 2003-01-01 Sim4 clustering to Release 3
mdy 2008-04-29 Release 5.5 accounting
mdy 2008-08-15 Release 5.9 accounting
mdy 2008-12-18 5.12 accounting

Clone Sequence Records

LD33852.complete Sequence

2074 bp (2074 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051835

> LD33852.complete
TTTACGGTAAAAAGAGGCCGCTTCCAGTACGTGAAAATAAGTCTGCTCTT
GTTGAAAGAAACAACAAAAACTTGCCAATTGGATTAAATTGTGTGCAAGA
GACCATCACCATGACCACCAATAAGGATCCCCAAGATAAGGAGCCCGGGA
AAGCAGAACAACCGACCAAGAATAGCGGATCCAGCGGTGTGGGTATCATG
AAGCGCTTGAGAAGATCGGCGTCCGCCACAGAGCATAATCTTAGCAGTCT
GCGAAACCGCAAGTCAACACAAAATCTATTCGATCAGCACGGGAATCCCA
TAGATCTGCGACAGTATCGTAAAGTTTTGGATAAGGATGAAAATGGTAAT
GGAACCAACGGATCCGAGAAGAAGCTTAGATACAGGAGAACACAAAGTGT
GACTCGTGCTGAGGAGATTTCCAATAAAGAGGAGAAGCAGAGAAGAGCTC
AGCCTGGCAGACCAATCCATCGGCCAAGAGATTCTCTGTTTTCTTGGAGC
TCTGGATTTACCAATTTTTCTGGACTGGTGAACTGGGGATTTCTACTGCT
CTGCATTGGAGGTCTGCGTTTGGGCTTGGAGAATCTCCTAAAGTATGGCA
TTCGCATCAATCCACTGGATTGGTTCTTCTTCATAAGCGGACACAACGAA
GGCGAAGGACATAACGCCCTAATCCTGAGCATTTACTCTTTAGTGCATAT
CTCGCTCTGTTTGGCTGTGGAGAAGGGTCTAGCCATGGAAATAATTGCAG
AGGGCTTGGGCTTGTTCATCCAGATAGTGAACATTGTTGTCTTGGTTTGC
CTACCGGTGGTAACAATTCACCTAAAAGGACATGCTTTTAGTTTGATGGG
CGCTTCAACAGTTTGCTTCTTTTACTCTGTGTTGTTCCTAAAACTATGGT
CCTATGTGCAGACGAATATGTGGTGCCGTCAGACTTATTATCAAAAGAAT
CCGCGGGAGCGTCGACCAAGCATAACTTTGGCGGAACTAAAAAAAGGAGT
TTTGAATGGAGGTGAAGAAGACGAGGACGTTTCCAAGCTGGTGCAATATC
CTGATAATCTCACATACAAGGATCTCCTGTACTTCCTTTGCGCGCCCACT
CTCTGCTATGAGTTGAATTTCCCGCGAACTTCTCGCGTGCGCAAACGCTT
TTTGCTGAAGCGTTTATTGGAGGTGGTGATTGGAGTGAATGTGGTTATGG
CCTTGTTTCAACAATGGATCATTCCATCGGTTCGGAACTCCCTGATTCCG
TTCTCCAATATGGACGTGGCCTTAGCCACTGAGCGACTTCTTAAACTTGC
GCTACCCAATCATCTTTGCTGGCTCTGCTTTTTCTATCTAATGTTCCACT
CTTTTCTTAATGCGGTCGGCGAACTGCTGAATTTTGCAGATCGCAATTTT
TATTGTGATTGGTGGAATGCGAATAACATTGACACCTTCTGGCGTACATG
GAACATGCCAGTTCATAGGTGGTGCGTGCGTCATCTCTACATCCCTGTGG
TCCAAATGGGATATTCCTCAAGACAGGCCTCTACTATTGTCTTTCTTTTC
AGTGCCGTCTTCCATGAATATTTGGTTTCAGTTCCTTTGCAAATATACAA
GATCTGGGCATTTATGGGCATGATGGGTCAGATTCCCCTATCGGCCATAT
CCAAATCCATTGAAAAGAAACTGGGTCCCCGAATGGGCAATATAATCGTG
TGGGCTTCCATTATTCTTGGTCAGCCTCTGTGCATAATGGCCTATTATCA
CGATTATGTCGTCCAGCATTTCAAAAACTCGCTCAACGGCACCGACTACA
GTAGTTAGGTTTCAAAAAAGGTTAACATTTAAAAATGGAGCAACACTGAA
ATATCTGCATCGGTCGGGTCCGTGTACTTTTCGTAATTTATAAGCCAGAA
TGCAAGTTAAGAAGGAAACTTGTGATTGCCAATTTACAAAGCATATTTTG
TATGACTTTTGCACATGCATGTAGTACTGATTAACACAAATAGATTGTTA
TTGAATGCATTTGTTAATGAATTTAAGTGTCATGTAAATAAATCAAATTT
TAAACTAAAAAAAAAAAAAAAAAA

LD33852.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-RA 2133 mdy-RA 51..2114 1..2064 10305 99.9 Plus
mdy-RC 2360 mdy-RC 376..2341 99..2064 9815 99.9 Plus
mdy-RD 2336 mdy-RD 353..2317 100..2064 9810 99.9 Plus
mdy-RC 2360 mdy-RC 31..129 1..99 495 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16825173..16825655 1574..2056 2415 100 Plus
chr2L 23010047 chr2L 16818801..16819166 98..463 1830 100 Plus
chr2L 23010047 chr2L 16824470..16824780 991..1301 1555 100 Plus
chr2L 23010047 chr2L 16824840..16825115 1301..1576 1380 100 Plus
chr2L 23010047 chr2L 16824270..16824413 847..990 720 100 Plus
chr2L 23010047 chr2L 16819222..16819353 464..595 660 100 Plus
chr2L 23010047 chr2L 16824100..16824209 737..846 550 100 Plus
chr2L 23010047 chr2L 16815385..16815483 1..99 495 100 Plus
chr2L 23010047 chr2L 16819409..16819500 593..684 460 100 Plus
chr2L 23010047 chr2L 16819569..16819622 685..738 270 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16826482..16826972 1574..2064 2440 99.8 Plus
2L 23513712 2L 16820110..16820475 98..463 1830 100 Plus
2L 23513712 2L 16825779..16826089 991..1301 1555 100 Plus
2L 23513712 2L 16826149..16826424 1301..1576 1380 100 Plus
2L 23513712 2L 16825579..16825722 847..990 720 100 Plus
2L 23513712 2L 16820531..16820662 464..595 660 100 Plus
2L 23513712 2L 16825409..16825518 737..846 550 100 Plus
2L 23513712 2L 16816694..16816792 1..99 495 100 Plus
2L 23513712 2L 16820718..16820809 593..684 460 100 Plus
2L 23513712 2L 16820878..16820931 685..738 270 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16826482..16826972 1574..2064 2440 99.7 Plus
2L 23513712 2L 16820110..16820475 98..463 1830 100 Plus
2L 23513712 2L 16825779..16826089 991..1301 1555 100 Plus
2L 23513712 2L 16826149..16826424 1301..1576 1380 100 Plus
2L 23513712 2L 16825579..16825722 847..990 720 100 Plus
2L 23513712 2L 16820531..16820662 464..595 660 100 Plus
2L 23513712 2L 16825409..16825518 737..846 550 100 Plus
2L 23513712 2L 16816694..16816792 1..99 495 100 Plus
2L 23513712 2L 16820718..16820809 593..684 460 100 Plus
2L 23513712 2L 16820878..16820931 685..738 270 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:42:59 has no hits.

LD33852.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:43:55 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16815385..16815483 1..99 100 -> Plus
chr2L 16818803..16819166 100..463 100 -> Plus
chr2L 16819222..16819350 464..592 100 -> Plus
chr2L 16819409..16819500 593..684 100 -> Plus
chr2L 16819569..16819621 685..737 100 -> Plus
chr2L 16824101..16824209 738..846 100 -> Plus
chr2L 16824270..16824413 847..990 100 -> Plus
chr2L 16824470..16824780 991..1301 100 -> Plus
chr2L 16824841..16825113 1302..1574 100 -> Plus
chr2L 16825174..16825627 1575..2028 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:03:46 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RD 140..1848 100..1808 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:18:42 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RD 140..1848 100..1808 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:10:25 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RD 140..1848 100..1808 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:18 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RD 140..1848 100..1808 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:38:57 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 1..1698 111..1808 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:03:35 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RA 30..2085 1..2056 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:18:42 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RA 30..2085 1..2056 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:10:25 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RA 35..2090 1..2056 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:19 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RA 30..2085 1..2056 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:38:57 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RA 35..2090 1..2056 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:55 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16825779..16826089 991..1301 100 -> Plus
2L 16820878..16820930 685..737 100 -> Plus
2L 16825410..16825518 738..846 100 -> Plus
2L 16825579..16825722 847..990 100 -> Plus
2L 16816694..16816792 1..99 100 -> Plus
2L 16820112..16820475 100..463 100 -> Plus
2L 16820531..16820659 464..592 100 -> Plus
2L 16820718..16820809 593..684 100 -> Plus
2L 16826150..16826422 1302..1574 100 -> Plus
2L 16826483..16826964 1575..2056 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:55 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16825779..16826089 991..1301 100 -> Plus
2L 16820878..16820930 685..737 100 -> Plus
2L 16825410..16825518 738..846 100 -> Plus
2L 16825579..16825722 847..990 100 -> Plus
2L 16816694..16816792 1..99 100 -> Plus
2L 16820112..16820475 100..463 100 -> Plus
2L 16820531..16820659 464..592 100 -> Plus
2L 16820718..16820809 593..684 100 -> Plus
2L 16826150..16826422 1302..1574 100 -> Plus
2L 16826483..16826964 1575..2056 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:55 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16825779..16826089 991..1301 100 -> Plus
2L 16820878..16820930 685..737 100 -> Plus
2L 16825410..16825518 738..846 100 -> Plus
2L 16825579..16825722 847..990 100 -> Plus
2L 16816694..16816792 1..99 100 -> Plus
2L 16820112..16820475 100..463 100 -> Plus
2L 16820531..16820659 464..592 100 -> Plus
2L 16820718..16820809 593..684 100 -> Plus
2L 16826150..16826422 1302..1574 100 -> Plus
2L 16826483..16826964 1575..2056 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:10:25 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16820878..16820930 685..737 100 -> Plus
arm_2L 16825410..16825518 738..846 100 -> Plus
arm_2L 16825579..16825722 847..990 100 -> Plus
arm_2L 16816694..16816792 1..99 100 -> Plus
arm_2L 16820112..16820475 100..463 100 -> Plus
arm_2L 16820531..16820659 464..592 100 -> Plus
arm_2L 16820718..16820809 593..684 100 -> Plus
arm_2L 16825779..16826089 991..1301 100 -> Plus
arm_2L 16826150..16826422 1302..1574 100 -> Plus
arm_2L 16826483..16826964 1575..2056 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:28:34 Download gff for LD33852.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16816694..16816792 1..99 100 -> Plus
2L 16820112..16820475 100..463 100 -> Plus
2L 16820531..16820659 464..592 100 -> Plus
2L 16820718..16820809 593..684 100 -> Plus
2L 16820878..16820930 685..737 100 -> Plus
2L 16825410..16825518 738..846 100 -> Plus
2L 16825579..16825722 847..990 100 -> Plus
2L 16825779..16826089 991..1301 100 -> Plus
2L 16826150..16826422 1302..1574 100 -> Plus
2L 16826483..16826964 1575..2056 100   Plus

LD33852.hyp Sequence

Translation from 2 to 1807

> LD33852.hyp
YGKKRPLPVRENKSALVERNNKNLPIGLNCVQETITMTTNKDPQDKEPGK
AEQPTKNSGSSGVGIMKRLRRSASATEHNLSSLRNRKSTQNLFDQHGNPI
DLRQYRKVLDKDENGNGTNGSEKKLRYRRTQSVTRAEEISNKEEKQRRAQ
PGRPIHRPRDSLFSWSSGFTNFSGLVNWGFLLLCIGGLRLGLENLLKYGI
RINPLDWFFFISGHNEGEGHNALILSIYSLVHISLCLAVEKGLAMEIIAE
GLGLFIQIVNIVVLVCLPVVTIHLKGHAFSLMGASTVCFFYSVLFLKLWS
YVQTNMWCRQTYYQKNPRERRPSITLAELKKGVLNGGEEDEDVSKLVQYP
DNLTYKDLLYFLCAPTLCYELNFPRTSRVRKRFLLKRLLEVVIGVNVVMA
LFQQWIIPSVRNSLIPFSNMDVALATERLLKLALPNHLCWLCFFYLMFHS
FLNAVGELLNFADRNFYCDWWNANNIDTFWRTWNMPVHRWCVRHLYIPVV
QMGYSSRQASTIVFLFSAVFHEYLVSVPLQIYKIWAFMGMMGQIPLSAIS
KSIEKKLGPRMGNIIVWASIILGQPLCIMAYYHDYVVQHFKNSLNGTDYS
S*

LD33852.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-PE 565 CG31991-PE 1..565 37..601 3001 100 Plus
mdy-PC 565 CG31991-PC 1..565 37..601 3001 100 Plus
mdy-PB 565 CG31991-PB 1..565 37..601 3001 100 Plus
mdy-PA 565 CG31991-PA 1..565 37..601 3001 100 Plus
CG8112-PB 559 CG8112-PB 281..529 333..581 350 35.8 Plus

LD33852.pep Sequence

Translation from 110 to 1807

> LD33852.pep
MTTNKDPQDKEPGKAEQPTKNSGSSGVGIMKRLRRSASATEHNLSSLRNR
KSTQNLFDQHGNPIDLRQYRKVLDKDENGNGTNGSEKKLRYRRTQSVTRA
EEISNKEEKQRRAQPGRPIHRPRDSLFSWSSGFTNFSGLVNWGFLLLCIG
GLRLGLENLLKYGIRINPLDWFFFISGHNEGEGHNALILSIYSLVHISLC
LAVEKGLAMEIIAEGLGLFIQIVNIVVLVCLPVVTIHLKGHAFSLMGAST
VCFFYSVLFLKLWSYVQTNMWCRQTYYQKNPRERRPSITLAELKKGVLNG
GEEDEDVSKLVQYPDNLTYKDLLYFLCAPTLCYELNFPRTSRVRKRFLLK
RLLEVVIGVNVVMALFQQWIIPSVRNSLIPFSNMDVALATERLLKLALPN
HLCWLCFFYLMFHSFLNAVGELLNFADRNFYCDWWNANNIDTFWRTWNMP
VHRWCVRHLYIPVVQMGYSSRQASTIVFLFSAVFHEYLVSVPLQIYKIWA
FMGMMGQIPLSAISKSIEKKLGPRMGNIIVWASIILGQPLCIMAYYHDYV
VQHFKNSLNGTDYSS*

LD33852.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15369-PA 570 GF15369-PA 1..562 1..565 2828 92.7 Plus
Dana\GF18181-PA 555 GF18181-PA 307..532 324..552 312 35.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22776-PA 611 GG22776-PA 47..611 1..565 3014 99.1 Plus
Dere\GG12153-PA 557 GG12153-PA 279..527 297..545 315 35.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13104-PA 565 GH13104-PA 1..564 1..565 2549 80.8 Plus
Dgri\GH18571-PA 567 GH18571-PA 298..541 303..549 327 33.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-PE 565 CG31991-PE 1..565 1..565 3001 100 Plus
mdy-PC 565 CG31991-PC 1..565 1..565 3001 100 Plus
mdy-PB 565 CG31991-PB 1..565 1..565 3001 100 Plus
mdy-PA 565 CG31991-PA 1..565 1..565 3001 100 Plus
CG8112-PB 559 CG8112-PB 281..529 297..545 350 35.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14192-PA 561 GI14192-PA 1..560 1..563 2553 83.1 Plus
Dmoj\GI24769-PA 569 GI24769-PA 293..543 297..549 326 31.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18793-PA 558 GL18793-PA 1..558 1..565 2769 90.6 Plus
Dper\GL12471-PA 563 GL12471-PA 286..540 297..552 328 33.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16599-PA 558 GA16599-PA 1..558 1..565 2769 90.6 Plus
Dpse\GA20833-PA 565 GA20833-PA 288..542 297..552 328 33.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17212-PA 607 GM17212-PA 43..607 1..565 3012 98.9 Plus
Dsec\GM23753-PA 558 GM23753-PA 310..528 324..545 307 37.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24087-PA 161 GD24087-PA 85..161 489..565 408 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17509-PA 565 GJ17509-PA 1..565 1..564 2649 84.7 Plus
Dvir\GJ22674-PA 574 GJ22674-PA 300..551 297..552 305 32.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18239-PA 566 GK18239-PA 1..566 1..565 2662 88.7 Plus
Dwil\GK11809-PA 577 GK11809-PA 328..554 323..552 339 36.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12771-PA 609 GE12771-PA 45..609 1..565 2997 98.4 Plus
Dyak\GE25896-PA 559 GE25896-PA 281..529 297..545 325 35.4 Plus