Clone LD33876 Report

Search the DGRC for LD33876

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:338
Well:76
Vector:pOT2
Associated Gene/TranscriptCG5037-RA
Protein status:LD33876.pep: gold
Preliminary Size:1629
Sequenced Size:1470

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5037 2001-01-01 Release 2 assignment
CG5037 2001-09-19 Blastp of sequenced clone
CG5037 2003-01-01 Sim4 clustering to Release 3
CG5037 2008-04-29 Release 5.5 accounting
CG5037 2008-08-15 Release 5.9 accounting
CG5037 2008-12-18 5.12 accounting

Clone Sequence Records

LD33876.complete Sequence

1470 bp (1470 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058639

> LD33876.complete
GTAACACTTAAGCACAATGTGATTTAAAAAACCATAACATTGTATATAAA
AGTAATAGAAATCCAAACACAACTAGAAAAATGAAATAACCGTAGACCTA
ACTAATAAGTGAATAATAATGATATTATTCAAAGGAATTCGGCGGGTGCA
ATCCCAGCTAAGAACGCCGGTTGATTTGGTGCTCATTCGGTACTCCACTG
CAGCAACGATAGCTTCCCAAGATGACAAAGGTGTCACTACAGCGTCGCCA
GTATCCCAGGCGGGAAAGGTCCAGCATTTACCCGATAGTCAAATTACCTG
GATGCCTAGTCCGTACACCATGCCCGGAAAAACTCTTAGCCAGTACAAGA
AGCTATCCAAGTTCCGGCTGACATCGCTGGTGGTCATTACAACGATGGGC
GGCTATGCCATGGCGCCAGCTGCTTTCGATCCCACAACGTTTGCGATGTG
CACCCTGGGCACAGGACTCGTTTCGGCTGCGGCGAATGCCATTAATCAGT
ATCACGAAGTTCCTTTCGATTCGCAGATGTCGAGGACAAAGAACCGGGTG
CTCGTCACGGGGCAAATGACACCACTGCATGCAGTTACCTTCGCCGCGGT
GTCGGCAACTGCCGGCTTAAGTATGCTGTATTTCGGAGTAAATGGATTGA
CGGCGGCGCTGGGAGCGGGTAACCTGTTCCTCTACACCACGATATACACA
CCGATGAAGCGTATCAGCATAGTCAATACCTGGGTGGGATCGATAGTGGG
CGCCATTCCTCCGCTGATGGGATGGGCTGGTTGTGCAGCCACCCTGGACG
CCGGCGCCATGATCCTAGCCGGAGTGCTGTACGCGTGGCAGTTCCCGCAC
TTCAACGCTCTGTCGTGGAACCTCCGGCCGGATTATTCACGTGCCGGCTA
CCGAATGATGGCCGTTACCAATCCGGGTCTTTGTCGCCGCACTGCGCTGC
GATATTCGGTGGCTATTGTCGGACTTTCAGCCATGGCACCCGTACTGGAC
GTCACGAACTACTGGTTTGCCTTGGAAACACTACCTCTGAACGCGTACTT
CGCCTACCTTGCGTACAAGTTTCATGAAAAGTCAGATAGTGGGAGCTCGC
GGAAGCTGTTCCGATTTTCACTGATACACCTGCCCGCCCTGATGCTGCTA
TTTCTGACCAATAAGAAGGAATGGTATTTCAGCAAACCCGCCGGTGAGGA
GAACAAAAAGGAGTCCACGTACAGTGCGATAAAGCATTCTGCTAGCAGTC
TTGGTAATGTCCTGCCCGTCGCCGTAGCCGAAGGACCCAGATAGAAATAT
TAACATTAATTTGATAAAATGTTAAGTATCGTGTGAAATTTAAATATACT
TAGTGTTCTGCAACTTGTAAAAACAGTCATTTAATATTAAGGAAACACGT
ACCCCTGTGCGGCAAATATATGTTGCGCCTAATAAATGACACGACATCCT
TGAAAAAAAAAAAAAAAAAA

LD33876.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-RA 1571 CG5037-RA 30..1486 1..1457 7285 100 Plus
CG5037.a 1502 CG5037.a 420..1502 375..1457 5415 100 Plus
CG5037.a 1502 CG5037.a 30..403 1..374 1870 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10330837..10331523 375..1061 3255 98.3 Plus
chr2L 23010047 chr2L 10331587..10331978 1061..1452 1930 99.5 Plus
chr2L 23010047 chr2L 10330341..10330530 1..190 935 99.5 Plus
chr2L 23010047 chr2L 10330591..10330779 186..374 930 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10331988..10332674 375..1061 3435 100 Plus
2L 23513712 2L 10332738..10333134 1061..1457 1985 100 Plus
2L 23513712 2L 10331492..10331681 1..190 950 100 Plus
2L 23513712 2L 10331742..10331930 186..374 930 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10331988..10332674 375..1061 3435 100 Plus
2L 23513712 2L 10332738..10333134 1061..1457 1985 100 Plus
2L 23513712 2L 10331492..10331681 1..190 950 100 Plus
2L 23513712 2L 10331742..10331930 186..374 930 99.4 Plus
Blast to na_te.dros performed 2019-03-15 16:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 702..826 3..127 129 59.1 Plus
rover 7318 rover ROVER 7318bp 853..977 3..127 129 59.1 Plus

LD33876.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:04:45 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10330341..10330530 1..190 99 -> Plus
chr2L 10330596..10330779 191..374 100 -> Plus
chr2L 10330837..10331523 375..1061 98 -> Plus
chr2L 10331588..10331978 1062..1452 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:15:45 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 1..1176 119..1294 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:59 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 1..1176 119..1294 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:51:02 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 1..1176 119..1294 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:25 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 1..1176 119..1294 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:25:13 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 1..1176 119..1294 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:42 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 30..1481 1..1452 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:59 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 30..1481 1..1452 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:02 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 22..1473 1..1452 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:25 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 30..1481 1..1452 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:25:13 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 22..1473 1..1452 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:45 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10331492..10331681 1..190 100 -> Plus
2L 10331747..10331930 191..374 100 -> Plus
2L 10331988..10332674 375..1061 100 -> Plus
2L 10332739..10333129 1062..1452 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:45 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10331492..10331681 1..190 100 -> Plus
2L 10331747..10331930 191..374 100 -> Plus
2L 10331988..10332674 375..1061 100 -> Plus
2L 10332739..10333129 1062..1452 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:45 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10331492..10331681 1..190 100 -> Plus
2L 10331747..10331930 191..374 100 -> Plus
2L 10331988..10332674 375..1061 100 -> Plus
2L 10332739..10333129 1062..1452 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:02 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10331492..10331681 1..190 100 -> Plus
arm_2L 10331747..10331930 191..374 100 -> Plus
arm_2L 10331988..10332674 375..1061 100 -> Plus
arm_2L 10332739..10333129 1062..1452 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:58 Download gff for LD33876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10331988..10332674 375..1061 100 -> Plus
2L 10332739..10333129 1062..1452 100   Plus
2L 10331492..10331681 1..190 100 -> Plus
2L 10331747..10331930 191..374 100 -> Plus

LD33876.pep Sequence

Translation from 118 to 1293

> LD33876.pep
MILFKGIRRVQSQLRTPVDLVLIRYSTAATIASQDDKGVTTASPVSQAGK
VQHLPDSQITWMPSPYTMPGKTLSQYKKLSKFRLTSLVVITTMGGYAMAP
AAFDPTTFAMCTLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQM
TPLHAVTFAAVSATAGLSMLYFGVNGLTAALGAGNLFLYTTIYTPMKRIS
IVNTWVGSIVGAIPPLMGWAGCAATLDAGAMILAGVLYAWQFPHFNALSW
NLRPDYSRAGYRMMAVTNPGLCRRTALRYSVAIVGLSAMAPVLDVTNYWF
ALETLPLNAYFAYLAYKFHEKSDSGSSRKLFRFSLIHLPALMLLFLTNKK
EWYFSKPAGEENKKESTYSAIKHSASSLGNVLPVAVAEGPR*

LD33876.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15766-PA 395 GF15766-PA 1..395 1..391 1721 85.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10107-PA 391 GG10107-PA 1..391 1..391 1970 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13369-PA 351 GH13369-PA 6..351 44..391 1454 79.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-PA 391 CG5037-PA 1..391 1..391 2014 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18678-PA 362 GI18678-PA 20..357 52..386 1352 74.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19148-PA 377 GL19148-PA 37..377 54..391 1434 83.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18613-PA 361 GA18613-PA 21..361 54..391 1438 83.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23677-PA 391 GD23677-PA 1..391 1..391 2014 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17536-PA 333 GJ17536-PA 1..331 62..389 1426 82.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23501-PA 319 GK23501-PA 4..319 75..391 1175 73.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18922-PA 391 GE18922-PA 1..391 1..391 1997 95.7 Plus

LD33876.hyp Sequence

Translation from 118 to 1293

> LD33876.hyp
MILFKGIRRVQSQLRTPVDLVLIRYSTAATIASQDDKGVTTASPVSQAGK
VQHLPDSQITWMPSPYTMPGKTLSQYKKLSKFRLTSLVVITTMGGYAMAP
AAFDPTTFAMCTLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQM
TPLHAVTFAAVSATAGLSMLYFGVNGLTAALGAGNLFLYTTIYTPMKRIS
IVNTWVGSIVGAIPPLMGWAGCAATLDAGAMILAGVLYAWQFPHFNALSW
NLRPDYSRAGYRMMAVTNPGLCRRTALRYSVAIVGLSAMAPVLDVTNYWF
ALETLPLNAYFAYLAYKFHEKSDSGSSRKLFRFSLIHLPALMLLFLTNKK
EWYFSKPAGEENKKESTYSAIKHSASSLGNVLPVAVAEGPR*

LD33876.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-PA 391 CG5037-PA 1..391 1..391 2014 100 Plus