Clone LD33880 Report

Search the DGRC for LD33880

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:338
Well:80
Vector:pOT2
Associated Gene/TranscriptCG6388-RA
Protein status:LD33880.pep: gold
Preliminary Size:2040
Sequenced Size:1814

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6388 2001-01-01 Release 2 assignment
CG6388 2001-07-04 Blastp of sequenced clone
CG6388 2003-01-01 Sim4 clustering to Release 3
CG6388 2008-04-29 Release 5.5 accounting
CG6388 2008-08-15 Release 5.9 accounting
CG6388 2008-12-18 5.12 accounting

Clone Sequence Records

LD33880.complete Sequence

1814 bp (1814 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051836

> LD33880.complete
CTCATCCAAATGGAAGTGGACGAGGAAAAGCCGCAGATTATTGCTGAAAA
TCCCAACGAAAACGTGATACGCGAACGTAATGCGGAGATCGTTTCCGGCG
GCAATGTGTTCTACAATCCTGTCCAGGAATTCAATCGAGATCTGAGCATT
GCTGCTCTGAATGTTTATCGACAGAGATTGACCAAGGAGCGGAGCGAAAA
GGCGCTCAAAAAGCAGCGGAAGAAGGTCAAGGAACAGGAGGATGAGAAGA
CCACTCCCGTTCCCGAGGATCCACCTGTTTATGAGGCCGGTACTCGATAT
GAGGATGGACTTCGGATCCTGGAGGCACTGGCAGCCACCGGTTTGCGTAG
CATCCGTTACGCGCAGGAAATCGCCGGTGTACGCCAGATCGTGGCCAACG
ATCTTTCCCGCCAGGCAGTGGCCTCGATCAACACAAACATCCGGCACAAC
AAGGTGGAGGAGCTGATCGAGCCCAGTCACTCCGATGCAATGACCCTCAT
GTATCTTTCGACGCAACCCGAGAAGCGTTTTGATGCAGTTGACTTGGATC
CGTACGGATGTCCCAATCGCTTTTTGGATGGCGCTATGCAGTGCCTGGTG
GACGGCGGCCTGCTGCTGGTGACAGCCACCGACATGGCCGTGCTGGCCGG
AAATGCTCCGGAAGCTTGCTATGTAAAATACGGATCGGTTCCGCTGCGGA
TGAAGTGCTGTCACGAGATGGCATTGCGCATTTTGCTGCACTGCATCGAG
AGCCACGCGAACAGGTACGGCAAGTACATCGAACCACTACTGAGCATATC
AGCGGACTTTTACATCCGGATATTTGTGCGTGTGTACGTCGGCCAGGCCC
AATGCAAGCTGTCGATGAGCAAGCAGTCTTGGATATACCAATGCACCGGA
TGTGAGACCTTCACGCTGCAGCCCTTGGGCATAACCAAGCCAAATCCCAC
GGCTGGTAATCCCCAGCAGCTGAAGTTCGGAATTCCCACTGGTCCGGCGG
TCAACTCGCAGTGCGAACATTGCGGTCACAGGCATCATCTGGGTGGACCC
ATCTGGTCGGCACCGATTCATAACCCCGAATTTGTGCAGGATCTTTTAAC
GGCGGTCCAGGAGACCACCTTGCAATCGCTGGGAACCCAGAGACGAATCG
TTGGAGTTCTTTCCATGGTCCAAGAGGAGCTGCAGGATGTTCCCCTTTAC
TACACGCCGGACAAACTGTGCTGTGTGCTCAAGCTAGAAATCGTGCCCAT
GCTAAAGTTCCGGTCTGCTATTCTCCACGCTGGCTATCGAGTCTCATACT
CGCATGCCTCGAAGAATTCGTTGAAAACCAATGCTCCACCAGCGGTGCTA
TGGGACATTCTGCGCAGCTGGAGCAAGCGACATCCGGTAAATCCCGAAAG
GATGATTCCTGGATCTCCACTGGCGGCCATACTTTCGAAAGAATGCACTG
CTGTCTACGAGTTCGATGAACTCCATCCGGAGGCGAACCCGAAGAGTCGC
AAATCGGCATTATCGCGCTTCCAAGAGAATCCGACTCCACATTGGGGACC
TGGAACCAGAGCCACTATTATGATTGGTGACAACAAACTACCCAAGAGCT
ATCGTAACCAGAACAAGAAACAGCGTCACAAAGCGTCGGAGCAACAGGCG
GAGGATGACCAACAGGACACTCCACAAGCAGTGGATGAGTATGATGGAGA
TGTGGAGCACCTGCCCAAGCAGCCCAAGCTGGAGGCGACTGCGTGACGAC
TGCTTCTGTGTCCCAAATTTATTTCCAATAATGTTTGTAAAACCCAAAAA
AAAAAAAAAAAAAA

LD33880.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-RA 1838 CG6388-RA 34..1832 1..1799 8995 100 Plus
CG5435-RA 978 CG5435-RA 780..978 1799..1601 995 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12427284..12428364 492..1572 5405 100 Plus
chr2L 23010047 chr2L 12426762..12427221 33..492 2300 100 Plus
chr2L 23010047 chr2L 12428421..12428644 1572..1795 1120 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12428661..12429741 492..1572 5405 100 Plus
2L 23513712 2L 12428139..12428598 33..492 2300 100 Plus
2L 23513712 2L 12429798..12430025 1572..1799 1140 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12428661..12429741 492..1572 5405 100 Plus
2L 23513712 2L 12428139..12428598 33..492 2300 100 Plus
2L 23513712 2L 12429798..12430025 1572..1799 1140 100 Plus
2L 23513712 2L 12428048..12428083 1..36 180 100 Plus
Blast to na_te.dros performed 2019-03-16 22:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 356..412 179..234 129 71.9 Plus

LD33880.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:03:16 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12426671..12426706 1..36 100 -> Plus
chr2L 12426766..12427220 37..491 100 -> Plus
chr2L 12427284..12428363 492..1571 100 -> Plus
chr2L 12428421..12428644 1572..1795 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:15:47 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 1..1737 10..1746 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:18:43 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 1..1737 10..1746 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:08:19 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 1..1737 10..1746 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:20 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 1..1737 10..1746 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:36 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 1..1737 10..1746 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:14:08 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 17..1811 1..1795 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:18:43 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 17..1811 1..1795 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:19 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 21..1815 1..1795 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:20 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 17..1811 1..1795 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:36 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 21..1815 1..1795 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:16 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12428048..12428083 1..36 100 -> Plus
2L 12428143..12428597 37..491 100 -> Plus
2L 12428661..12429740 492..1571 100 -> Plus
2L 12429798..12430021 1572..1795 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:16 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12428048..12428083 1..36 100 -> Plus
2L 12428143..12428597 37..491 100 -> Plus
2L 12428661..12429740 492..1571 100 -> Plus
2L 12429798..12430021 1572..1795 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:16 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12428048..12428083 1..36 100 -> Plus
2L 12428143..12428597 37..491 100 -> Plus
2L 12428661..12429740 492..1571 100 -> Plus
2L 12429798..12430021 1572..1795 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:19 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12428048..12428083 1..36 100 -> Plus
arm_2L 12428143..12428597 37..491 100 -> Plus
arm_2L 12428661..12429740 492..1571 100 -> Plus
arm_2L 12429798..12430021 1572..1795 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:28:36 Download gff for LD33880.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12428048..12428083 1..36 100 -> Plus
2L 12428143..12428597 37..491 100 -> Plus
2L 12428661..12429740 492..1571 100 -> Plus
2L 12429798..12430021 1572..1795 100   Plus

LD33880.hyp Sequence

Translation from 0 to 1745

> LD33880.hyp
LIQMEVDEEKPQIIAENPNENVIRERNAEIVSGGNVFYNPVQEFNRDLSI
AALNVYRQRLTKERSEKALKKQRKKVKEQEDEKTTPVPEDPPVYEAGTRY
EDGLRILEALAATGLRSIRYAQEIAGVRQIVANDLSRQAVASINTNIRHN
KVEELIEPSHSDAMTLMYLSTQPEKRFDAVDLDPYGCPNRFLDGAMQCLV
DGGLLLVTATDMAVLAGNAPEACYVKYGSVPLRMKCCHEMALRILLHCIE
SHANRYGKYIEPLLSISADFYIRIFVRVYVGQAQCKLSMSKQSWIYQCTG
CETFTLQPLGITKPNPTAGNPQQLKFGIPTGPAVNSQCEHCGHRHHLGGP
IWSAPIHNPEFVQDLLTAVQETTLQSLGTQRRIVGVLSMVQEELQDVPLY
YTPDKLCCVLKLEIVPMLKFRSAILHAGYRVSYSHASKNSLKTNAPPAVL
WDILRSWSKRHPVNPERMIPGSPLAAILSKECTAVYEFDELHPEANPKSR
KSALSRFQENPTPHWGPGTRATIMIGDNKLPKSYRNQNKKQRHKASEQQA
EDDQQDTPQAVDEYDGDVEHLPKQPKLEATA*

LD33880.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-PA 578 CG6388-PA 1..578 4..581 3046 100 Plus

LD33880.pep Sequence

Translation from 9 to 1745

> LD33880.pep
MEVDEEKPQIIAENPNENVIRERNAEIVSGGNVFYNPVQEFNRDLSIAAL
NVYRQRLTKERSEKALKKQRKKVKEQEDEKTTPVPEDPPVYEAGTRYEDG
LRILEALAATGLRSIRYAQEIAGVRQIVANDLSRQAVASINTNIRHNKVE
ELIEPSHSDAMTLMYLSTQPEKRFDAVDLDPYGCPNRFLDGAMQCLVDGG
LLLVTATDMAVLAGNAPEACYVKYGSVPLRMKCCHEMALRILLHCIESHA
NRYGKYIEPLLSISADFYIRIFVRVYVGQAQCKLSMSKQSWIYQCTGCET
FTLQPLGITKPNPTAGNPQQLKFGIPTGPAVNSQCEHCGHRHHLGGPIWS
APIHNPEFVQDLLTAVQETTLQSLGTQRRIVGVLSMVQEELQDVPLYYTP
DKLCCVLKLEIVPMLKFRSAILHAGYRVSYSHASKNSLKTNAPPAVLWDI
LRSWSKRHPVNPERMIPGSPLAAILSKECTAVYEFDELHPEANPKSRKSA
LSRFQENPTPHWGPGTRATIMIGDNKLPKSYRNQNKKQRHKASEQQAEDD
QQDTPQAVDEYDGDVEHLPKQPKLEATA*

LD33880.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14196-PA 582 GF14196-PA 1..579 1..575 2559 82.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23784-PA 579 GG23784-PA 1..579 1..578 2929 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10107-PA 594 GH10107-PA 1..594 1..578 2331 75.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-PA 578 CG6388-PA 1..578 1..578 3046 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14433-PA 589 GI14433-PA 3..543 1..545 2311 79.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19347-PA 586 GL19347-PA 1..586 1..578 2568 81.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19557-PA 586 GA19557-PA 1..586 1..578 2545 81.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26818-PA 578 GM26818-PA 1..578 1..578 3109 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23837-PA 578 GD23837-PA 1..578 1..578 3091 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16265-PA 431 GJ16265-PA 1..415 1..410 1676 76.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15497-PA 571 GK15497-PA 13..546 4..541 2423 82.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18588-PA 579 GE18588-PA 1..579 1..578 3002 96.2 Plus