Clone LD33980 Report

Search the DGRC for LD33980

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:339
Well:80
Vector:pOT2
Associated Gene/TranscriptNak-RB
Protein status:LD33980.pep: wuzgold
Preliminary Size:1708
Sequenced Size:3308

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10637 2001-01-01 Release 2 assignment
CG10637 2001-09-19 Blastp of sequenced clone
CG10637 2003-01-01 Sim4 clustering to Release 3
Nak 2008-04-29 Release 5.5 accounting
Nak 2008-08-15 Release 5.9 accounting
Nak 2008-12-18 5.12 accounting

Clone Sequence Records

LD33980.complete Sequence

3308 bp (3308 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058640

> LD33980.complete
TCAGTTTCTGGCTCCGTTTAACAATAACTTGGCTGCCATGGGCGACGGTC
AGCAGACTTTGGCTAGTGCTGCCTCGAATCCCGGGATATATGCATCTTCA
ACGGCAAACTCAGCCGCGGTATCCATTAGCGAATTAATGAAACCAGGACA
AACGGCGGTGGAAAAGCGAGTTGAAGCCTGGAATCCGTTCGAAGAGGAGC
AGCCTTTCAGCCAGATGACTGAGGATCACATCTTTGAGGCGGAGTTCGAC
AAGATACGACAGAGAGGCAGTCAAGGAAGCATCACAGCAAAATCGGCATC
CACAACTTCCACGCTAACACCAACGGAGCAGATTCCCTCTGCGGTTGTGG
CTCCTGTTACAGCTGCTCCTGGTGCAGTGCCTCCTCCGCCGATTGCTGCC
GCTGTGTCTCCTTACCCGTCGCAGGTCTCCGAGGATCCATTCGGATCGGC
GCCATTCAGTTTGCCACCCGGACTGCGCGAGAAGGCGAGCTCGCTGCGCA
AAACCGGAGCGAAATTCATCGGCGTTTCATCTGGTGGAACAGGAGGCGGA
GTGGCCACGCCTATCGGCTTGGTAGCGGGAGGAGCAAACACCGCCACCTC
TTCCAACTCATCCAAGTGGATGCTCTCCCCCACCCTGGAGGTTTCCAGCG
AAGAGAAGACCTCGCTTATCAGTAAACTCAAAACAGACTCAGAATGTGGA
ATTCCAGGCGCTGTTGGAGGAGCTGGAGAAGGTGTCTCTGGTTATGTTAA
GCTACCTGTAGAAGATCGCAACAAGTACGAGAAGCTGCGCAGCAAAGATC
AGCCGACTTCCGATGACTCCGATTCCGAGGCTTCGGAGTTCTTTCAACAA
GACAGCGATGAAGGAGGTGGGGGCATCTTTAGGCAAATGCAGATGGTGAC
AAGCAATTTGCCGGAAACCATCCATAAAATCCAACAGGTTGCCTATCACA
AGGTGGACAAGACAGCTCATCTGCCAATTGTGAAGAAACTTCGCGATAAG
ACCAAGAAACCCACAACAGCTGCCCATCAAGCGGCCCAACAACTAAATCT
CATGGCTGCCGCGGTAGCTGCACAAGCTGAAGAAGCTGCCAAGGCGGCGG
AATCCGACGGTGATTCGATCGGATCTGCCAGTGACCTGCGGGCAGAGGAT
GATGATCTGTTTGACGAGAATCCTCGCCAGACACAAGCCAAGCAACGTCG
TCCTCTGCCAACAGAAATGGATGGAATAAGCGAGTCAGTGAAGACCTGTA
GCAGCTCTGCCTACCATGCAGAATGTGAAAGTGTGACCACCCATGAAGAC
GATGTGCGTAGTCGGGTGGTGGTGAAGGTGCGGATGAGGAAGAAGGACCG
TGCCCTTGTGACTGCCACTGGCGACCCAAGTGCTCCGTCTGAAGAACTAA
GTCCCACTTCGAGCGATCTCTTGCACAAGTTCGGCGATCGTCCGTTGCTG
CTAGATGATGAATTGGATTATGGTTCTGGAGAAAGCAAGAGTAGCACTGA
ATCTCCTGTGGCTCCAATTCTGCCAACAAATCCCGATGTGCAGGAATCAG
AGGAGGATGTGTTCGCCCTGGCTCCATTTAAATTACCAGTCGGAGTTCCT
TTGAAACGAAAGACTAAACCCAAAGCTAAGCCCAAGCCTTCGGAACCCGA
GATGTGGACTTCAACGCCAGTTAAAAGCGCCGCTGTCGGAGATCCTTCTA
CCAACTTTGCCAGTTTTCCAGCGCAGCTCACGCCAACCAATAATGTGGGG
AACTCTGCGCAGCTGGATGAGTTCAATGAGCCAATTTTCAATCCCTTCCA
GGAAAACGCACAGAACACGCAATCAGGGGAAACTAATCAATGCGACCTGT
TCGGCTTGGAACCATTTCCACAGGTAATTCGTACAATCGAACAGAACCCA
CAGCACCACCAGATCCACCAATTTCCCAGCCACAACAACAATAACAATGT
GATCAAAGTGCCCGCCTCCGTATCTGTTGCTCTTCCTGCCTCCGTTCCTG
TATCTGTTTCCGTCAATTCGTCTGCCCCACAACTGGTGACCATAAATCAC
TCGATTATTATCAACAAAACGCCGGAGCCACCGATGAACTATAATAATAA
TAATAATAACCAGACTGCTAAGTCGAGTGGCACCAGCAGTGTCTATGTGA
ATGTGCCGTCTTTCTCCAGCATGAGCACCAGTTCCTGCTCCATTAACCAG
CCACAATCCTCACCAGCAGCTGTGATTCCAGTTCAGGCACCTCTTCCAGT
TCCAGTTCCTGCCCCTGTTTCCGTTCCAGCCGTTCCAGTTCCAATACCAG
CGGTCGTTACCCATCTGCGTCCTTTGCTGCCCATTGCCGATAATGCGTAT
GTGCAAATCTCCCAAGATCGCTGCTCAGATTTCACACCGGACGACGAGGA
GGAACCCGTGGTGTTGCGTGATGCCGATGTGGTGGCAGACGGAATCGGTA
TACCTACCCCTGCGAAACCCAAGAAGGAGAAGTCCAATCTGGCTGTAAGG
GTTCTGCCGGGAAAGCTCACCCAAAAGGTAAAGGGGCATTCGTACAAAAA
AGTAAGCGCGGCTGCCCTTGGATCCACCAGTTCCCTTAGTTCCGGCAGCA
AGCAGAAGCACCAGCGATTGCAGTACCAGTCCCACGATGATGACGACGAC
GAACAGGATCAGGATGAGAATCGAGGTGCTGGAGGCGGCCGCAATTTCCA
ATCAAACACCATTCAAAATTCTGCCAAAACCGGCTTCAGCAACATGAGCT
TTGAGGACTTTCCCTCGGATCAGGAAATGGATCGTCTGTCCAGGACCATT
CCCTTCGAGGTGGTTAGAAACGAAAAGATGTTACTCGAGGCGGAGAAGAA
GTTCGGCTCCCTCAAGCGACGGAACAACTTGTTCTCATAATGTGGACAGT
GGGGCGAGACCATCAAGGAGACCTGAGACTGAGTGTTTCAAATTATGTTG
ACATTTCGTTTAAGCTTTTCTCCGTTCCGTTTTTAATGTGGGGTTCCAAA
AATAACCAATATCTGTATTTTTTGAATATAGTATTTATTCGCGTGTAGCA
ATGTTAAAAAGTGGCTAGTACCCATACATATTATACACACAACAAGAACA
ATACCTATAACTGTTATTTAGTGCAAAAATTTAAACTAGTTTTAGAAGCG
AAACATGTTTTAGAATTTATACAGTGCGTAAGTTTACCAAAGTTACATTT
ATTTTTGTGGCATTTTTCAGCTTGAAGTATTTCATGAATTATATATTTAT
ACAAAACTATGTGATTATACACCCACACCCAATAACAACCAAAAAAAAAA
AAAAAAAA

LD33980.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
Nak-RA 5400 Nak-RA 1931..5236 1..3306 16530 100 Plus
Nak-RB 3362 Nak-RB 49..3354 1..3306 16530 100 Plus
Nak.b 4808 Nak.b 1928..3672 1..1745 8725 100 Plus
Nak.b 4808 Nak.b 3741..4800 2247..3306 5300 100 Plus
Nak.b 4808 Nak.b 3672..3743 1802..1873 360 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18956579..18959361 3290..508 13840 99.8 Minus
chr2L 23010047 chr2L 18961849..18962127 279..1 1395 100 Minus
chr2L 23010047 chr2L 18961564..18961794 509..279 1155 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18957884..18960682 3306..508 13995 100 Minus
2L 23513712 2L 18963170..18963448 279..1 1395 100 Minus
2L 23513712 2L 18962885..18963115 509..279 1155 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18957884..18960682 3306..508 13995 100 Minus
2L 23513712 2L 18963170..18963448 279..1 1395 100 Minus
2L 23513712 2L 18962885..18963115 509..279 1155 100 Minus
Blast to na_te.dros performed 2019-03-15 19:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 6941..6995 3251..3198 119 70.9 Minus

LD33980.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:36:32 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18956579..18959359 510..3290 99 <- Minus
chr2L 18961564..18961794 279..509 100 <- Minus
chr2L 18961850..18962127 1..278 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:15:50 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1578..4467 1..2890 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:00 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1578..4467 1..2890 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:59:25 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1578..4467 1..2890 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:26 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1578..4467 1..2890 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:34 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1578..4467 1..2890 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:44 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RB 49..3338 1..3290 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:00 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RB 49..3338 1..3290 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:25 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1907..5196 1..3290 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:26 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RB 49..3319 1..3271 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:34 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1907..5196 1..3290 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:36:32 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18957900..18960680 510..3290 100 <- Minus
2L 18962885..18963115 279..509 100 <- Minus
2L 18963171..18963448 1..278 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:36:32 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18957900..18960680 510..3290 100 <- Minus
2L 18962885..18963115 279..509 100 <- Minus
2L 18963171..18963448 1..278 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:36:32 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18957900..18960680 510..3290 100 <- Minus
2L 18962885..18963115 279..509 100 <- Minus
2L 18963171..18963448 1..278 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:25 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18957900..18960680 510..3290 100 <- Minus
arm_2L 18962885..18963115 279..509 100 <- Minus
arm_2L 18963171..18963448 1..278 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:59 Download gff for LD33980.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18957900..18960680 510..3290 100 <- Minus
2L 18962885..18963115 279..509 100 <- Minus
2L 18963171..18963448 1..278 100   Minus

LD33980.hyp Sequence

Translation from 0 to 2889

> LD33980.hyp
QFLAPFNNNLAAMGDGQQTLASAASNPGIYASSTANSAAVSISELMKPGQ
TAVEKRVEAWNPFEEEQPFSQMTEDHIFEAEFDKIRQRGSQGSITAKSAS
TTSTLTPTEQIPSAVVAPVTAAPGAVPPPPIAAAVSPYPSQVSEDPFGSA
PFSLPPGLREKASSLRKTGAKFIGVSSGGTGGGVATPIGLVAGGANTATS
SNSSKWMLSPTLEVSSEEKTSLISKLKTDSECGIPGAVGGAGEGVSGYVK
LPVEDRNKYEKLRSKDQPTSDDSDSEASEFFQQDSDEGGGGIFRQMQMVT
SNLPETIHKIQQVAYHKVDKTAHLPIVKKLRDKTKKPTTAAHQAAQQLNL
MAAAVAAQAEEAAKAAESDGDSIGSASDLRAEDDDLFDENPRQTQAKQRR
PLPTEMDGISESVKTCSSSAYHAECESVTTHEDDVRSRVVVKVRMRKKDR
ALVTATGDPSAPSEELSPTSSDLLHKFGDRPLLLDDELDYGSGESKSSTE
SPVAPILPTNPDVQESEEDVFALAPFKLPVGVPLKRKTKPKAKPKPSEPE
MWTSTPVKSAAVGDPSTNFASFPAQLTPTNNVGNSAQLDEFNEPIFNPFQ
ENAQNTQSGETNQCDLFGLEPFPQVIRTIEQNPQHHQIHQFPSHNNNNNV
IKVPASVSVALPASVPVSVSVNSSAPQLVTINHSIIINKTPEPPMNYNNN
NNNQTAKSSGTSSVYVNVPSFSSMSTSSCSINQPQSSPAAVIPVQAPLPV
PVPAPVSVPAVPVPIPAVVTHLRPLLPIADNAYVQISQDRCSDFTPDDEE
EPVVLRDADVVADGIGIPTPAKPKKEKSNLAVRVLPGKLTQKVKGHSYKK
VSAAALGSTSSLSSGSKQKHQRLQYQSHDDDDDEQDQDENRGAGGGRNFQ
SNTIQNSAKTGFSNMSFEDFPSDQEMDRLSRTIPFEVVRNEKMLLEAEKK
FGSLKRRNNLFS*

LD33980.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Nak-PD 1488 CG10637-PD 527..1488 1..962 4921 100 Plus
Nak-PA 1488 CG10637-PA 527..1488 1..962 4921 100 Plus
Nak-PC 698 CG10637-PC 527..697 1..171 859 99.4 Plus
Nak-PE 708 CG10637-PE 527..695 1..169 854 100 Plus

LD33980.pep Sequence

Translation from 37 to 2889

> LD33980.pep
MGDGQQTLASAASNPGIYASSTANSAAVSISELMKPGQTAVEKRVEAWNP
FEEEQPFSQMTEDHIFEAEFDKIRQRGSQGSITAKSASTTSTLTPTEQIP
SAVVAPVTAAPGAVPPPPIAAAVSPYPSQVSEDPFGSAPFSLPPGLREKA
SSLRKTGAKFIGVSSGGTGGGVATPIGLVAGGANTATSSNSSKWMLSPTL
EVSSEEKTSLISKLKTDSECGIPGAVGGAGEGVSGYVKLPVEDRNKYEKL
RSKDQPTSDDSDSEASEFFQQDSDEGGGGIFRQMQMVTSNLPETIHKIQQ
VAYHKVDKTAHLPIVKKLRDKTKKPTTAAHQAAQQLNLMAAAVAAQAEEA
AKAAESDGDSIGSASDLRAEDDDLFDENPRQTQAKQRRPLPTEMDGISES
VKTCSSSAYHAECESVTTHEDDVRSRVVVKVRMRKKDRALVTATGDPSAP
SEELSPTSSDLLHKFGDRPLLLDDELDYGSGESKSSTESPVAPILPTNPD
VQESEEDVFALAPFKLPVGVPLKRKTKPKAKPKPSEPEMWTSTPVKSAAV
GDPSTNFASFPAQLTPTNNVGNSAQLDEFNEPIFNPFQENAQNTQSGETN
QCDLFGLEPFPQVIRTIEQNPQHHQIHQFPSHNNNNNVIKVPASVSVALP
ASVPVSVSVNSSAPQLVTINHSIIINKTPEPPMNYNNNNNNQTAKSSGTS
SVYVNVPSFSSMSTSSCSINQPQSSPAAVIPVQAPLPVPVPAPVSVPAVP
VPIPAVVTHLRPLLPIADNAYVQISQDRCSDFTPDDEEEPVVLRDADVVA
DGIGIPTPAKPKKEKSNLAVRVLPGKLTQKVKGHSYKKVSAAALGSTSSL
SSGSKQKHQRLQYQSHDDDDDEQDQDENRGAGGGRNFQSNTIQNSAKTGF
SNMSFEDFPSDQEMDRLSRTIPFEVVRNEKMLLEAEKKFGSLKRRNNLFS
*

LD33980.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14645-PA 1495 GF14645-PA 550..1495 1..950 3077 77.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21669-PA 1483 GG21669-PA 539..1483 1..950 3959 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11600-PA 1580 GH11600-PA 584..1580 1..950 2346 63.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Nak-PD 1488 CG10637-PD 539..1488 1..950 4859 100 Plus
Nak-PA 1488 CG10637-PA 539..1488 1..950 4859 100 Plus
Nak-PC 698 CG10637-PC 539..697 1..159 797 99.4 Plus
Nak-PE 708 CG10637-PE 539..695 1..157 792 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17169-PA 1521 GI17169-PA 566..1521 2..950 2359 62.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19623-PA 1534 GL19623-PA 562..1534 1..950 2859 70.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10457-PA 1534 GA10457-PA 562..1534 1..950 2840 70.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17048-PA 1378 GM17048-PA 538..1149 1..612 2764 98.5 Plus
Dsec\GM17048-PA 1378 GM17048-PA 1149..1378 721..950 965 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21795-PA 1516 GD21795-PA 539..1484 1..950 4895 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17674-PA 1515 GJ17674-PA 560..1515 2..950 2408 63.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24682-PA 1553 GK24682-PA 568..1553 2..950 2479 66.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12690-PA 1479 GE12690-PA 539..1479 1..950 3932 93.3 Plus