Clone LD34072 Report

Search the DGRC for LD34072

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:340
Well:72
Vector:pOT2
Associated Gene/TranscriptPep-RC
Protein status:LD34072.pep: gold
Preliminary Size:3083
Sequenced Size:2657

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6143 2001-01-01 Release 2 assignment
CG6143 2002-05-20 Blastp of sequenced clone
Pep 2008-04-29 Release 5.5 accounting
Pep 2008-08-15 Release 5.9 accounting
Pep 2008-12-18 5.12 accounting

Clone Sequence Records

LD34072.complete Sequence

2657 bp (2657 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118552

> LD34072.complete
CGTAATATTGGATAGGCGGAGTGTTTAGACAAGGGCGGCCATCTTTCTGA
AGTGAGGAAAACTGTAGTCCAAGTAGTCCAGTCATTTTGACAAATCGCCG
TTGCAACACCGTAAAGGTCAACGGAAATCCGCAGAATCGTTTAGTGAATA
ACGCAAAGGTCAACGGCAACATGGCTTTCCGTGGTAACCAGAACCGCAAC
CGCAATTTTGGAGGTGGCAACAACAACTATGGTGGACCCATGGGCGCCAA
CCGCATGGGCGGTATGAACATGTCGCCTTGGGAATCGCAGAATCCCGGCG
GCGGACAGTTTGGTAACAACATGCGACAGGGTGGCGGTCAGATGAACGCC
CAGGCCATCAACTTGGCCAACAATCTGCTGAACAATCTGTTCAGGAACCA
GAATCCACCATCGCTTCTCGACTTGCCCCGCGGCGGCGGTGGCATGGGAA
ATCGCAACCAACGTGGTGGCCCGATGGTCAGTCGCGGCGGCGGTGCCGGC
AATCGTCTCAATAACCGTCGTGGCCAGGGAGGTGGCTTCCAAAATCGTGG
CGCCACTGGTAGTGGACCCAAGCCCCCGCCAAAGCAGGGCGGCGGCGGTA
TTCGCAAGCAAAATGCTTTTGATCGTGCCAAGAAACTTTTGGCTAAAAAT
GCCAACCAAAATAAAAAGAAGGAACCCACTCCTGGCGAAAAGAAAATCGA
GAGCCCTACCAAGGAGTCTCCATACGCTAGTGTGCCGAACGACATGTTCT
ACTGCCATCTGTGCAAGAAGCACATGTGGGATGCCAACTCTTTCGAGAAC
CACATCAAGGGCCGCACCCATCTGATGATGCGTGAGGGCATTGAGGAGAG
CTATCGCCTCAAGGCCAACATGATCCGTCAGGAGGCTAAGATCGCAGAGC
AGCTCAAGTCGATCGAGTTTGACCGCTTGAAGCGCATGGGCAAAAGCAAG
CAGCGTCAGCTGGACTACTGCACCATGTGCGACCTGAACTTCCATGGTCA
CATCTCGACCCATCGCAAGTCGGAGGGACATTTGCAGCTGAAGAAGTTCT
TGCACCCCAAGTGCATTGAGTGCAACAAGGAGTTCGCCACTCGCATTGAC
TACGATACTCATCTGCTGTCCGCCGAGCATCTGAAGAAGGCTGCCGAGAA
CAACACCAAGGTGGGTGAGCGCAAGCGCCAGACCTTGCCCATCAGCACCG
AAGAAGAGGAGACCCGCGATTTGCGCCTGCCCCAGAAGCGCAAGAAGAAG
CCGGTCAAGAAGGAGGGCGAAGCAGCCGATGGCGAGGCTAAGAAGGAGGG
TGCCGGCGATGGCGAGGGTGCCGAAGGTGATGAAGCCGAGGGAGAAGAGG
CCAAGGAGGGTGAGGAAGCTGCTGACGAGACAAAGGAGGGCGATGAGCTA
AACGAGAGCCAAGAGGAAGAGGAAGTGGCACTGCCCGTGGACCCCGAGGA
CTGCATCCTTGACTTCAACGACGGCGATGAGATCCCCAGCGAGGTGGATA
CCCGCCTACCTAAGTACAACTGGCAGCGTGCTGTCGGTCCCGGTCTGATC
TCCAAGCTGGAGTGCTATGAGTGCTCGGTGTGCAGCAAGTTCTTCGACAC
CGAGGTGACCGCCGAGATTCACTCCCGTACGGCGACTCATCACCGCAACT
TCTTGAAGTTTATCAACGAGAAATCAAGCGATACCAAGATCGCACAGAAG
CGCGCAGCTGCCGCCCTGGAGGAGAATGAGCGTAAGAAGCGCAAGGTTGA
GGAGGCAGAGGCTCCGGCTGCCGAGGGCGCAGCCGAGGAAACCACCGAAG
GCGCTGAGGGTGAGCTGTACGATCCATCGGAAGCCACTGGCGATGACGAG
GACGTGGAGATGGTGGATGATAATGCTGAGGGCGAGGGCGAAGGCGAAGG
TGACGAGGAAGCCGAGGCTGAGGTCGAGGAAGATGGCGCCGGCCAGGACA
ACGGCGAAGAGGAGATGGAAGCCCAGGAGGAAGAGGGTCAGGAGGGCGAG
CAAGAGCCCGAACCTGAGCCAGCTCCAGTCCAAACTCCTGCCCCGGCTGA
ACCTGCACCACCAGCCAAGACCCCAGCCAAGACTCCGACCAAGGCAGCTG
CTCCAGCCGCTGTTGCCAGTCCCGCAGCTGCGGCAACGTCGGCAGACGCC
TCTCCATCTCCGGCCAAGAAGGCAACGCCTGCTCGCGCTGCCGCCGGAGC
CAAGGCCACGCCGCAGCGACAACGCGCCCGCGGTCGCTACAATCGCTACT
AAGTAGACGTCGAAGGAATTCGTAATTTAACATAACATAAACCTTAATAT
ACAAGAAAAAATTTACATTCACGCCCAGGAGGAGGATGAAGAAAGAACAG
ATCAAATCGATCTCTTCCCGCAATTTGACATTTGCATCCCAATTTGCATA
TACACTGAATGAATGGAAACTGAGAAGAAGACGGTCAACTTTTAGTTGAA
ACAGTTGAATATATTGTACGACGAAGCTTCTTGAAACTGACGAGGGAGAA
CACAAACAAGTTAATTGAATCGAGAATCGTATTACCTACCCGATTCCCCC
CTCACAGAACGCATACCATGCCAGCCAGCGAACCAACCATTCAACTTATG
TAATCATATAAATTCTATAATAAACAAAGAAACAAAACTAAAAAAAAAAA
AAAAAAA

LD34072.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Pep-RC 2970 Pep-RC 170..2809 1..2640 13200 100 Plus
Pep-RB 2985 Pep-RB 328..2858 110..2640 12655 100 Plus
Pep-RA 2637 Pep-RA 539..2476 703..2640 9690 100 Plus
Pep-RA 2637 Pep-RA 67..539 1..473 2365 100 Plus
Pep-RB 2985 Pep-RB 118..227 1..110 550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17627699..17629636 2639..702 9690 100 Minus
chr3L 24539361 chr3L 17632958..17633321 473..110 1820 100 Minus
chr3L 24539361 chr3L 17630614..17630844 703..473 1155 100 Minus
chr3L 24539361 chr3L 17634486..17634594 109..1 545 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17638117..17640055 2640..702 9695 100 Minus
3L 28110227 3L 17643363..17643726 473..110 1820 100 Minus
3L 28110227 3L 17641026..17641256 703..473 1155 100 Minus
3L 28110227 3L 17644891..17644999 109..1 545 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17631217..17633155 2640..702 9695 100 Minus
3L 28103327 3L 17636463..17636826 473..110 1820 100 Minus
3L 28103327 3L 17634126..17634356 703..473 1155 100 Minus
3L 28103327 3L 17637991..17638099 109..1 545 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:48:14 has no hits.

LD34072.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:49:06 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17627699..17629634 704..2639 100 <- Minus
chr3L 17630614..17630843 474..703 100 <- Minus
chr3L 17632958..17633321 110..473 100 <- Minus
chr3L 17634486..17634594 1..109 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:15:52 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RB 2..2151 102..2252 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:57 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RB 2..2151 102..2252 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:20 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RB 2..2151 102..2252 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:44 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RB 2..2151 102..2252 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:21:52 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RB 2..2151 102..2252 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:12:01 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RC 33..2671 1..2639 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:57 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RC 54..2692 1..2639 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:20 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RC 38..2676 1..2639 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:44 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RC 33..2671 1..2639 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:21:52 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
Pep-RC 38..2676 1..2639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:49:06 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17638118..17640053 704..2639 100 <- Minus
3L 17641026..17641255 474..703 100 <- Minus
3L 17643363..17643726 110..473 100 <- Minus
3L 17644891..17644999 1..109 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:49:06 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17638118..17640053 704..2639 100 <- Minus
3L 17641026..17641255 474..703 100 <- Minus
3L 17643363..17643726 110..473 100 <- Minus
3L 17644891..17644999 1..109 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:49:06 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17638118..17640053 704..2639 100 <- Minus
3L 17641026..17641255 474..703 100 <- Minus
3L 17643363..17643726 110..473 100 <- Minus
3L 17644891..17644999 1..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:20 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17631218..17633153 704..2639 100 <- Minus
arm_3L 17634126..17634355 474..703 100 <- Minus
arm_3L 17636463..17636826 110..473 100 <- Minus
arm_3L 17637991..17638099 1..109 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:03:17 Download gff for LD34072.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17631218..17633153 704..2639 100 <- Minus
3L 17634126..17634355 474..703 100 <- Minus
3L 17636463..17636826 110..473 100 <- Minus
3L 17637991..17638099 1..109 100   Minus

LD34072.pep Sequence

Translation from 170 to 2251

> LD34072.pep
MAFRGNQNRNRNFGGGNNNYGGPMGANRMGGMNMSPWESQNPGGGQFGNN
MRQGGGQMNAQAINLANNLLNNLFRNQNPPSLLDLPRGGGGMGNRNQRGG
PMVSRGGGAGNRLNNRRGQGGGFQNRGATGSGPKPPPKQGGGGIRKQNAF
DRAKKLLAKNANQNKKKEPTPGEKKIESPTKESPYASVPNDMFYCHLCKK
HMWDANSFENHIKGRTHLMMREGIEESYRLKANMIRQEAKIAEQLKSIEF
DRLKRMGKSKQRQLDYCTMCDLNFHGHISTHRKSEGHLQLKKFLHPKCIE
CNKEFATRIDYDTHLLSAEHLKKAAENNTKVGERKRQTLPISTEEEETRD
LRLPQKRKKKPVKKEGEAADGEAKKEGAGDGEGAEGDEAEGEEAKEGEEA
ADETKEGDELNESQEEEEVALPVDPEDCILDFNDGDEIPSEVDTRLPKYN
WQRAVGPGLISKLECYECSVCSKFFDTEVTAEIHSRTATHHRNFLKFINE
KSSDTKIAQKRAAAALEENERKKRKVEEAEAPAAEGAAEETTEGAEGELY
DPSEATGDDEDVEMVDDNAEGEGEGEGDEEAEAEVEEDGAGQDNGEEEME
AQEEEGQEGEQEPEPEPAPVQTPAPAEPAPPAKTPAKTPTKAAAPAAVAS
PAAAATSADASPSPAKKATPARAAAGAKATPQRQRARGRYNRY*

LD34072.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23899-PA 713 GF23899-PA 28..583 1..557 2294 88.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15796-PA 713 GG15796-PA 24..713 1..693 2610 94.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15349-PA 737 GH15349-PA 32..590 1..566 2382 90.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Pep-PD 693 CG6143-PD 1..693 1..693 3669 100 Plus
Pep-PC 693 CG6143-PC 1..693 1..693 3669 100 Plus
Pep-PB 716 CG6143-PB 24..716 1..693 3669 100 Plus
Pep-PA 109 CG6143-PA 1..101 1..101 561 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12952-PA 741 GI12952-PA 33..589 1..562 2319 90.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25230-PA 293 GL25230-PA 1..291 234..527 1222 91.8 Plus
Dper\GL25229-PA 218 GL25229-PA 33..217 1..177 844 93 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23732-PA 738 GA23732-PA 33..738 1..693 2325 84.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24320-PA 304 GM24320-PA 1..105 1..105 569 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12391-PA 716 GD12391-PA 24..716 1..693 3626 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13096-PA 723 GJ13096-PA 31..585 1..562 2285 91.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22509-PA 685 GK22509-PA 1..685 1..693 2330 75.7 Plus
Dwil\GK10796-PA 766 GK10796-PA 36..666 1..604 2192 82.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22133-PA 715 GE22133-PA 24..588 1..565 2412 98.1 Plus

LD34072.hyp Sequence

Translation from 170 to 2251

> LD34072.hyp
MAFRGNQNRNRNFGGGNNNYGGPMGANRMGGMNMSPWESQNPGGGQFGNN
MRQGGGQMNAQAINLANNLLNNLFRNQNPPSLLDLPRGGGGMGNRNQRGG
PMVSRGGGAGNRLNNRRGQGGGFQNRGATGSGPKPPPKQGGGGIRKQNAF
DRAKKLLAKNANQNKKKEPTPGEKKIESPTKESPYASVPNDMFYCHLCKK
HMWDANSFENHIKGRTHLMMREGIEESYRLKANMIRQEAKIAEQLKSIEF
DRLKRMGKSKQRQLDYCTMCDLNFHGHISTHRKSEGHLQLKKFLHPKCIE
CNKEFATRIDYDTHLLSAEHLKKAAENNTKVGERKRQTLPISTEEEETRD
LRLPQKRKKKPVKKEGEAADGEAKKEGAGDGEGAEGDEAEGEEAKEGEEA
ADETKEGDELNESQEEEEVALPVDPEDCILDFNDGDEIPSEVDTRLPKYN
WQRAVGPGLISKLECYECSVCSKFFDTEVTAEIHSRTATHHRNFLKFINE
KSSDTKIAQKRAAAALEENERKKRKVEEAEAPAAEGAAEETTEGAEGELY
DPSEATGDDEDVEMVDDNAEGEGEGEGDEEAEAEVEEDGAGQDNGEEEME
AQEEEGQEGEQEPEPEPAPVQTPAPAEPAPPAKTPAKTPTKAAAPAAVAS
PAAAATSADASPSPAKKATPARAAAGAKATPQRQRARGRYNRY*

LD34072.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
Pep-PD 693 CG6143-PD 1..693 1..693 3669 100 Plus
Pep-PC 693 CG6143-PC 1..693 1..693 3669 100 Plus
Pep-PB 716 CG6143-PB 24..716 1..693 3669 100 Plus
Pep-PA 109 CG6143-PA 1..101 1..101 561 100 Plus