Clone LD34105 Report

Search the DGRC for LD34105

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:341
Well:5
Vector:pOT2
Associated Gene/TranscriptCG3238-RA
Protein status:LD34105.pep: gold
Preliminary Size:2820
Sequenced Size:2530

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3238 2001-01-01 Release 2 assignment
CG3238 2001-09-19 Blastp of sequenced clone
CG3238 2003-01-01 Sim4 clustering to Release 3
CG3238 2008-04-29 Release 5.5 accounting
CG3238 2008-08-15 Release 5.9 accounting
CG3238 2008-12-18 5.12 accounting

Clone Sequence Records

LD34105.complete Sequence

2530 bp (2530 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058641

> LD34105.complete
ATCGGCGACCAAGCGCATGGAAAAGATTTGGCTTTTGTATTTAATTTAAT
TTAATCGGAAACTGACTGAAGTGAAGTTAATTTCGCCATGGATCTCAATG
ACGCAGTGCTCACCTGTGCGGTGAACATGGAGTGGACCAATGCGGTGGGC
ATCACGGGTCGCAAACTGGCCTACAAGACTGCCACATTGCGCCTGGTGCG
GAACGATTTGCGTGAATTGTTTGTTGAGGTGACGCCGGAGAAACTAAAGC
CCCTGAAGTTCAAGCTGAAGGATCTGATGGTGCACAAGAAGTTCATGTCC
GAGGGCAAGGCCACCTTCAACTTCAAGGCGGAGAAGTGCACCCTCTATCT
ATCGAATGCACCGCCGGGGACTTTGATGTTCTTCCTGCGGACGATCTTCG
TTAAAATGAACGGAAACGAGGGAGGATCCCAGCCGGACGATGCGACCTTG
CAGAAGAAACTCCGCGAGCACCTGATGTCAGGCAAGCCAAGCAGCTTTAA
CGACGTTTCTCCAGTCACCACGGCCGAGATGATTTTGGCGCGCAAAAAGG
CGGGTTTGTTGTCCAAGGGGTCAGTGACCACGCCGTCGCCCCAGGGCGCC
AAAAAGCGTCGCTTCGAGGAGCTCAAGGAGGAGAAGGAACGGGGCACCAT
GCCCGCGGCCAAGAAACTATATGCGTCGACTACCGACGAGTCGCTGAGAC
TCAGTGAGGAGCAAATGGAAGTCCTGCGGGCGTGCACCTCGGGCAAGAGC
GTATTCTTCACCGGTTCAGCAGGCACTGGCAAGAGTTTCTTGCTCCGCAG
GATCATCTCAGCCCTGCCGCCCGATGGAACGGTGGCCACGGCCTCCACGG
GAGTGGCAGCCTGCCTGATCGGTGGGACCACCTTGCACGCCTTCGCTGGC
ATAGGAGGAGGAGACGCCACCATGCAGCGGTGTCTGGAGCTGGCTTCCCG
ACCCGCAAATGCCCAGACGTGGAGGAAGTGCAAGCGGTTGATTATTGACG
AGATCTCCATGGTGGACGGACAGTTCTTTGAGAAAATTGAAGCCGTCGCA
CGTCACATTCGGCGCAATGATCGCCCCTTTGGCGGCATACAGCTCATCCT
GTGTGGTGACTTCTTGCAACTGCCTCCGGTCATAAAGGGAGATTTTGGTG
CAGCCCCCACTGCCACGCCCCAGCAACGATTCTGCTTTCAGTCCTCCGCA
TGGGAGACTTGCATCCAGTGTGTCTACGAACTGAAGCAAGTGCATCGGCA
ATCGGATCCGGAGTTTGTAAAGATTCTGAACCACCTCCGAATTGGCCATG
TGAACGATTCCATAACCAGTCGACTTGCAGCTACATCAAAGCAGAAAATT
GAGGGAAACGGCATTCTGGCCACTCAACTCTGCTCCCACACAAACGATGC
GAACTCCATTAACGAGTCCAAGCTGGAAAACCTCGATGGCGACAAGATTT
TATTCAAGGCTGACGACTCCGATGCCAGCATGACCAGGACACTGGATCAA
CAGATCCAGGCTCCATCTCAGTTGTACCTAAAAGTTAACGCCCAAGTAAT
GCTACTCAAGAATATAAACATATCCAATGGACTGGTGAACGGAGCTCGAG
GCGTCGTTGTAAGAATGGAGAAGGATCTGCCAGTGGTAAGGTTCAAAAAC
AACCAGGAATACGTTTGCAAGCACGAAAGGTGGATAATAAAGACCGCCTC
AGGAAACCATATAACACGACGCCAAGTGCCACTGAAGTTAGCCTGGGCAT
TTTCCATACACAAGAGTCAGGGACTAACCCTCGACTGCGTGGAGATGTCC
CTTTCCAAAGTATTTGAGGCTGGACAGGCCTATGTGGCCTTATCCCGTGC
GAAATCCCTGCAGTCCATTCGCATCCTGGACTTTGACGCCAAGCAAGTGT
GGGCCAATCCACACGTGCTGCAGTTCTACAAGGGATTCAGACGCAAGCTA
ATGGACACAACCATGATACCATTGGGTCCCAAAAACAAGGACAAGAAGCC
AGGAGACAAGGCCGCAAATAGCGCTCTGGCTAAGCTCAAAAAGAGTCTCA
TCAACAAGCCGCTGGTCTCGATTAGCTGAGCTCGAAAGTAATCTAAGATA
GCGTAATTCTAGAAAGCTTGAACAAATTTCACTATTGCCTATCTATTGGT
ATCTATTTCTAAAAGTGTAATTTTTTCTTTTTTTAAGAAAAGCAAATGAT
TTATGGACTGTGCATTCCTTTTTTTAAAAAATGAGAAATTATGGAACTCT
TTTTGAAATTGTCTAAATTTTCGAAAAAGTCTGAAGAATTACAGTGTGAG
TTTTATGATTTATCACTATATTCTGTAAACTTATTGCAGTACGCAGGCAA
AAACTTTATTTTACTCACTGGAACAACTTAACCAAGGCTCTTAATCTTGA
GAACTATTAGTTTTAAGCTAGTCTATAGCCAAAATTCTATATCAAACGCC
AATATTAATATTTATTTTAAGAAAAACATGACTAAGAATAAATGCAACTA
ATAGACAAAAACAAAAAAAAAAAAAAAAAA

LD34105.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3238-RA 2732 CG3238-RA 145..2653 1..2509 12545 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3467005..3468482 2509..1031 7165 99.1 Minus
chr2L 23010047 chr2L 3468533..3469564 1032..1 5160 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3467421..3468899 2509..1031 7395 100 Minus
2L 23513712 2L 3468950..3469981 1032..1 5160 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3467421..3468899 2509..1031 7395 100 Minus
2L 23513712 2L 3468950..3469981 1032..1 5160 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:38:19 has no hits.

LD34105.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:39:33 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3467000..3468480 1033..2512 98 <- Minus
chr2L 3468533..3469564 1..1032 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:15:53 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
CG3238-RA 1..1992 88..2079 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:46 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
CG3238-RA 1..1992 88..2079 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:20:57 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
CG3238-RA 1..1992 88..2079 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:12 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
CG3238-RA 1..1992 88..2079 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:36:43 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
CG3238-RA 1..1992 88..2079 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:22 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
CG3238-RA 27..2535 1..2512 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:46 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
CG3238-RA 27..2535 1..2512 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:57 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
CG3238-RB 24..2532 1..2512 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:12 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
CG3238-RA 27..2535 1..2512 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:36:43 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
CG3238-RB 24..2532 1..2512 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:33 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3467416..3468897 1033..2512 99 <- Minus
2L 3468950..3469981 1..1032 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:33 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3467416..3468897 1033..2512 99 <- Minus
2L 3468950..3469981 1..1032 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:33 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3467416..3468897 1033..2512 99 <- Minus
2L 3468950..3469981 1..1032 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:57 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3467416..3468897 1033..2512 99 <- Minus
arm_2L 3468950..3469981 1..1032 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:43 Download gff for LD34105.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3467416..3468897 1033..2512 99 <- Minus
2L 3468950..3469981 1..1032 100   Minus

LD34105.pep Sequence

Translation from 87 to 2078

> LD34105.pep
MDLNDAVLTCAVNMEWTNAVGITGRKLAYKTATLRLVRNDLRELFVEVTP
EKLKPLKFKLKDLMVHKKFMSEGKATFNFKAEKCTLYLSNAPPGTLMFFL
RTIFVKMNGNEGGSQPDDATLQKKLREHLMSGKPSSFNDVSPVTTAEMIL
ARKKAGLLSKGSVTTPSPQGAKKRRFEELKEEKERGTMPAAKKLYASTTD
ESLRLSEEQMEVLRACTSGKSVFFTGSAGTGKSFLLRRIISALPPDGTVA
TASTGVAACLIGGTTLHAFAGIGGGDATMQRCLELASRPANAQTWRKCKR
LIIDEISMVDGQFFEKIEAVARHIRRNDRPFGGIQLILCGDFLQLPPVIK
GDFGAAPTATPQQRFCFQSSAWETCIQCVYELKQVHRQSDPEFVKILNHL
RIGHVNDSITSRLAATSKQKIEGNGILATQLCSHTNDANSINESKLENLD
GDKILFKADDSDASMTRTLDQQIQAPSQLYLKVNAQVMLLKNINISNGLV
NGARGVVVRMEKDLPVVRFKNNQEYVCKHERWIIKTASGNHITRRQVPLK
LAWAFSIHKSQGLTLDCVEMSLSKVFEAGQAYVALSRAKSLQSIRILDFD
AKQVWANPHVLQFYKGFRRKLMDTTMIPLGPKNKDKKPGDKAANSALAKL
KKSLINKPLVSIS*

LD34105.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14672-PA 663 GF14672-PA 1..663 1..663 3237 91.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24437-PA 663 GG24437-PA 1..663 1..663 3454 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11550-PA 660 GH11550-PA 1..660 1..663 2940 80.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pif1-PB 663 CG3238-PB 1..663 1..663 3397 100 Plus
Pif1-PA 663 CG3238-PA 1..663 1..663 3397 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17040-PA 659 GI17040-PA 1..659 1..663 2975 82.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19477-PA 664 GL19477-PA 1..664 1..663 3201 90.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16856-PA 664 GA16856-PA 1..664 1..663 3201 90.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11131-PA 663 GM11131-PA 1..663 1..663 3540 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22755-PA 663 GD22755-PA 1..663 1..663 3540 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24695-PA 664 GJ24695-PA 1..664 1..663 2933 82.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23961-PA 670 GK23961-PA 1..670 1..663 3070 84.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14865-PA 663 GE14865-PA 1..663 1..663 3482 97.6 Plus

LD34105.hyp Sequence

Translation from 87 to 2078

> LD34105.hyp
MDLNDAVLTCAVNMEWTNAVGITGRKLAYKTATLRLVRNDLRELFVEVTP
EKLKPLKFKLKDLMVHKKFMSEGKATFNFKAEKCTLYLSNAPPGTLMFFL
RTIFVKMNGNEGGSQPDDATLQKKLREHLMSGKPSSFNDVSPVTTAEMIL
ARKKAGLLSKGSVTTPSPQGAKKRRFEELKEEKERGTMPAAKKLYASTTD
ESLRLSEEQMEVLRACTSGKSVFFTGSAGTGKSFLLRRIISALPPDGTVA
TASTGVAACLIGGTTLHAFAGIGGGDATMQRCLELASRPANAQTWRKCKR
LIIDEISMVDGQFFEKIEAVARHIRRNDRPFGGIQLILCGDFLQLPPVIK
GDFGAAPTATPQQRFCFQSSAWETCIQCVYELKQVHRQSDPEFVKILNHL
RIGHVNDSITSRLAATSKQKIEGNGILATQLCSHTNDANSINESKLENLD
GDKILFKADDSDASMTRTLDQQIQAPSQLYLKVNAQVMLLKNINISNGLV
NGARGVVVRMEKDLPVVRFKNNQEYVCKHERWIIKTASGNHITRRQVPLK
LAWAFSIHKSQGLTLDCVEMSLSKVFEAGQAYVALSRAKSLQSIRILDFD
AKQVWANPHVLQFYKGFRRKLMDTTMIPLGPKNKDKKPGDKAANSALAKL
KKSLINKPLVSIS*

LD34105.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3238-PB 663 CG3238-PB 1..663 1..663 3397 100 Plus
CG3238-PA 663 CG3238-PA 1..663 1..663 3397 100 Plus