Clone LD34147 Report

Search the DGRC for LD34147

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:341
Well:47
Vector:pOT2
Associated Gene/TranscriptCG5080-RA
Protein status:LD34147.pep: gold
Preliminary Size:2167
Sequenced Size:2002

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5080 2001-01-01 Release 2 assignment
CG5080 2001-09-19 Blastp of sequenced clone
CG5080 2003-01-01 Sim4 clustering to Release 3
CG5080 2008-04-29 Release 5.5 accounting
CG5080 2008-08-15 Release 5.9 accounting
CG5080 2008-12-18 5.12 accounting

Clone Sequence Records

LD34147.complete Sequence

2002 bp (2002 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058642

> LD34147.complete
CTGTTAGGACGTCCAGCTCCAAGTTTTCGAGCCAAGTGATCCAAGTGTGT
GTGCAAAACAGAGGCTACTCTTCGAACTTGAGCCATTCAATTTCCCCCAA
GGGTCACCCCACGCAGTGGACTCGCTTACCAATTTAAGATCGCATCGACG
CACCAAACCCACGATGGCCGGAGGAAGTCGCCCTCTCCAATTAGTTCTCC
TGGTCCTAGTTGCGCTCGCCCAATGGCAACCCATCGCCGCTGGATTGGTC
TCCAACGAGGAGCTGCGCGGAACTATCCAGTCGCTGATCTACTCCTACAA
TCAGCTGGACAATAAGCTGGAGCGGCACGAGCATCGCGAGCGTGCGTTGG
GCGAGCTGCTCAAGAAGGCGCTGCAGTCGCTCCAGAAGGGCCAGAAGAGC
CTGGAGCCCATCAATGGGATCTTCGGGCGCCTGGACGAGCGGGTCAGCCA
GATAGAGACCATGCTGATCACGCAAGAGGAGAAGTACAACTCGCAGTCGG
ACCGCTTCAACCAGGCAACGGAGCACATGTTCAAGTGGATGCGGGAGAAC
GACGAGTGCTTCAAGAGGCCGCCGGTCAGCGCCAACATGATCGCTCCCCC
AGCCGCGGCCGCCCCACCCGCCATTCCCAAGGAGTTCCTGGAGGATCAGA
AGCGCCTCAACGCCAAGCTGCTCGAGGAGATCCAGAAGTTGTCGGCCAGC
GTGGCCGCCCTCAAGGAGAGCAGCCAGAAGGCGTCCGATCAGACCCAGAA
GCGCCTCGAGGGTCTGCCCAAGGCACCGGAGCTGCTGTCCCAGATCGAAG
CCAAGCTGCAAGAGCACGCGGCCAGCGTGACCACCGCCGCTCCACCGAAG
AACGCTGAGTTCGAGGCCCAACTCCTGGAGCGTCTCACCTCGCTGGGCGG
CCAGGTGAGCTCTCTAAGCGAGACTGTGCAGCGACCAGCTGCTCCGGTTG
GCCTGAGCGAGACGGATCGCGCCTACATCCAGGAACTGAACAACGATACC
CTGAATGCGCTGGCGCAGCTGAAGAGCGAGTCCTCGGTGGAACAGAAGTC
AGCTGCGACGGAGGCCACGGAGCGACTGCAGCAGGCGGAGGCCAACATCC
AGGCGGACGTTCGCCAGCTGTCCGCGGACGTGGGCATTCTCAACAAGCAC
TTCGCCTCGACTAACGAGAGCAATGCCAAGCTGAACGAGGGACTCGAAGC
GCTCGGTAAGTTCAACAACATCATGATGACCAACTCGGAGGTCGTGCTGG
ACACGCAGCGCAAGGTGGACTTCGGCACACTGAACGTGGTGCAGCGGGTT
GGCAAGCTGCTGGCGGAGGAAATGGCCACGCTGAGCGGACTGCTGAAGGA
GCGCTTCTCGTCGCTGGACGGAGCGGTGGTGAGCATCCAGCAGGAGGCGA
ACAAGAACATCAGCGGACTGCTGGAAACGGAGCTGAACCAGGTGTGGCAC
CGCATCGAGATCATGGCCGGCGAGATCAGCCAGAGCCGGCTGATGCTCGG
AGATATCCAGTCCGCTTCCGATGGCTACAACAACAGCACTCTCATCACCA
TGATGGGTCTCGGCAGCCGCGTGGAGGAGACCAAGAAACACATGATCGAC
ATGGACGAGAACCTCAACTATCTGCTGGGCAAGCTGTCGCTCATGTCCAC
CGAGTTCGCCAGCATCAAGAAGGGCCTGGCCGACTCCCTCGAGGATCTGC
GCAACTCCTTCCACGGCCTCCACGAGCGGATGCCCACGGGTCCCGGTCCG
CACAACATCGACAAGAACACGTATCTGACCGACGTCAATCTCCTGTCCAA
GCGCCACGCTGAGCCCGGTCGGGAGTAGAGCGGCTGAGCGCCGGAGATGA
CACTTGAACGAAAAGCAATACAATACTTTTAACCATAGCGCTTAAGTCTG
CCCACTTACATATACTCATCTAGTTGCGCCTTAAGCTTAAGCACAGCAAA
ACGTCACTCAATAAAGATCGAATATTATGTACAAAAAAAAAAAAAAAAAA
AA

LD34147.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5080-RB 2400 CG5080-RB 377..2360 1..1984 9920 100 Plus
CG5080-RA 2382 CG5080-RA 460..2342 102..1984 9415 100 Plus
CG5080.a 2013 CG5080.a 134..2013 103..1982 9400 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1160216..1161148 1982..1050 4665 100 Minus
chr2L 23010047 chr2L 1161216..1161796 1052..472 2860 99.5 Minus
chr2L 23010047 chr2L 1161853..1162072 472..253 1100 100 Minus
chr2L 23010047 chr2L 1162926..1163077 252..102 710 99.3 Minus
chr2L 23010047 chr2L 1163685..1163788 104..1 520 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1160288..1161222 1984..1050 4675 100 Minus
2L 23513712 2L 1161290..1161870 1052..472 2905 100 Minus
2L 23513712 2L 1161927..1162146 472..253 1100 100 Minus
2L 23513712 2L 1163000..1163150 252..102 755 100 Minus
2L 23513712 2L 1163758..1163861 104..1 520 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1160288..1161222 1984..1050 4675 100 Minus
2L 23513712 2L 1161290..1161870 1052..472 2905 100 Minus
2L 23513712 2L 1161927..1162146 472..253 1100 100 Minus
2L 23513712 2L 1163000..1163150 252..102 755 100 Minus
2L 23513712 2L 1163758..1163861 104..1 520 100 Minus
Blast to na_te.dros performed 2019-03-15 13:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 7590..7644 1333..1279 113 67.3 Minus

LD34147.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:43:59 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1160216..1161145 1053..1982 100 <- Minus
chr2L 1161216..1161795 473..1052 99 <- Minus
chr2L 1161853..1162072 253..472 100 <- Minus
chr2L 1162926..1163076 103..252 99 <- Minus
chr2L 1163687..1163788 1..102 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:00 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RA 1..1665 164..1828 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:48 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RA 1..1665 164..1828 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:10:31 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 1..1665 164..1828 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:13 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RA 1..1665 164..1828 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:39:03 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 1..1665 164..1828 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:24 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 22..2003 1..1982 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:48 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 22..2003 1..1982 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:10:31 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 26..2007 1..1982 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:14 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 22..2003 1..1982 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:39:03 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 26..2007 1..1982 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:59 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1160290..1161219 1053..1982 100 <- Minus
2L 1161290..1161869 473..1052 100 <- Minus
2L 1161927..1162146 253..472 100 <- Minus
2L 1163000..1163149 103..252 100 <- Minus
2L 1163760..1163861 1..102 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:59 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1160290..1161219 1053..1982 100 <- Minus
2L 1161290..1161869 473..1052 100 <- Minus
2L 1161927..1162146 253..472 100 <- Minus
2L 1163000..1163149 103..252 100 <- Minus
2L 1163760..1163861 1..102 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:59 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1160290..1161219 1053..1982 100 <- Minus
2L 1161290..1161869 473..1052 100 <- Minus
2L 1161927..1162146 253..472 100 <- Minus
2L 1163000..1163149 103..252 100 <- Minus
2L 1163760..1163861 1..102 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:10:31 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1160290..1161219 1053..1982 100 <- Minus
arm_2L 1161290..1161869 473..1052 100 <- Minus
arm_2L 1161927..1162146 253..472 100 <- Minus
arm_2L 1163000..1163149 103..252 100 <- Minus
arm_2L 1163760..1163861 1..102 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:45 Download gff for LD34147.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1163760..1163861 1..102 100   Minus
2L 1160290..1161219 1053..1982 100 <- Minus
2L 1161290..1161869 473..1052 100 <- Minus
2L 1161927..1162146 253..472 100 <- Minus
2L 1163000..1163149 103..252 100 <- Minus

LD34147.pep Sequence

Translation from 163 to 1827

> LD34147.pep
MAGGSRPLQLVLLVLVALAQWQPIAAGLVSNEELRGTIQSLIYSYNQLDN
KLERHEHRERALGELLKKALQSLQKGQKSLEPINGIFGRLDERVSQIETM
LITQEEKYNSQSDRFNQATEHMFKWMRENDECFKRPPVSANMIAPPAAAA
PPAIPKEFLEDQKRLNAKLLEEIQKLSASVAALKESSQKASDQTQKRLEG
LPKAPELLSQIEAKLQEHAASVTTAAPPKNAEFEAQLLERLTSLGGQVSS
LSETVQRPAAPVGLSETDRAYIQELNNDTLNALAQLKSESSVEQKSAATE
ATERLQQAEANIQADVRQLSADVGILNKHFASTNESNAKLNEGLEALGKF
NNIMMTNSEVVLDTQRKVDFGTLNVVQRVGKLLAEEMATLSGLLKERFSS
LDGAVVSIQQEANKNISGLLETELNQVWHRIEIMAGEISQSRLMLGDIQS
ASDGYNNSTLITMMGLGSRVEETKKHMIDMDENLNYLLGKLSLMSTEFAS
IKKGLADSLEDLRNSFHGLHERMPTGPGPHNIDKNTYLTDVNLLSKRHAE
PGRE*

LD34147.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14732-PA 552 GF14732-PA 1..550 1..550 2288 80.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24608-PA 555 GG24608-PA 1..555 1..554 2604 91.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11185-PA 555 GH11185-PA 4..555 3..554 1736 61.6 Plus
Dgri\GH13899-PA 227 GH13899-PA 2..227 330..554 749 63.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5080-PC 554 CG5080-PC 1..554 1..554 2754 100 Plus
CG5080-PA 554 CG5080-PA 1..554 1..554 2754 100 Plus
CG5080-PB 554 CG5080-PB 1..554 1..554 2754 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18062-PA 560 GI18062-PA 1..556 1..551 1747 63.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15001-PA 508 GL15001-PA 3..507 29..550 1978 76.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18646-PA 535 GA18646-PA 1..534 1..550 2053 75.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16623-PA 554 GM16623-PA 1..554 1..554 2818 96.8 Plus
Dsec\GM12824-PA 274 GM12824-PA 16..274 296..554 1347 98.5 Plus
Dsec\GM13294-PA 103 GM13294-PA 23..99 27..103 390 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22923-PA 554 GD22923-PA 1..554 1..554 2835 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16490-PA 564 GJ16490-PA 30..564 24..554 1818 67.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18377-PA 552 GK18377-PA 1..546 11..551 1898 67 Plus
Dwil\GK18831-PA 235 GK18831-PA 1..229 323..551 906 73.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15733-PA 554 GE15733-PA 1..554 1..554 2383 88.1 Plus

LD34147.hyp Sequence

Translation from 163 to 1827

> LD34147.hyp
MAGGSRPLQLVLLVLVALAQWQPIAAGLVSNEELRGTIQSLIYSYNQLDN
KLERHEHRERALGELLKKALQSLQKGQKSLEPINGIFGRLDERVSQIETM
LITQEEKYNSQSDRFNQATEHMFKWMRENDECFKRPPVSANMIAPPAAAA
PPAIPKEFLEDQKRLNAKLLEEIQKLSASVAALKESSQKASDQTQKRLEG
LPKAPELLSQIEAKLQEHAASVTTAAPPKNAEFEAQLLERLTSLGGQVSS
LSETVQRPAAPVGLSETDRAYIQELNNDTLNALAQLKSESSVEQKSAATE
ATERLQQAEANIQADVRQLSADVGILNKHFASTNESNAKLNEGLEALGKF
NNIMMTNSEVVLDTQRKVDFGTLNVVQRVGKLLAEEMATLSGLLKERFSS
LDGAVVSIQQEANKNISGLLETELNQVWHRIEIMAGEISQSRLMLGDIQS
ASDGYNNSTLITMMGLGSRVEETKKHMIDMDENLNYLLGKLSLMSTEFAS
IKKGLADSLEDLRNSFHGLHERMPTGPGPHNIDKNTYLTDVNLLSKRHAE
PGRE*

LD34147.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5080-PC 554 CG5080-PC 1..554 1..554 2754 100 Plus
CG5080-PA 554 CG5080-PA 1..554 1..554 2754 100 Plus
CG5080-PB 554 CG5080-PB 1..554 1..554 2754 100 Plus