Clone LD34157 Report

Search the DGRC for LD34157

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:341
Well:57
Vector:pOT2
Associated Gene/TranscriptCG10184-RA
Protein status:LD34157.pep: gold
Preliminary Size:1506
Sequenced Size:1324

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10184 2001-01-01 Release 2 assignment
CG10184 2001-07-04 Blastp of sequenced clone
CG10184 2003-01-01 Sim4 clustering to Release 3
CG10184 2008-04-29 Release 5.5 accounting
CG10184 2008-08-15 Release 5.9 accounting
CG10184 2008-12-18 5.12 accounting

Clone Sequence Records

LD34157.complete Sequence

1324 bp (1324 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051837

> LD34157.complete
AACGGAGCACGTTGTGTGATTTTTTTCGCTTAGTTTTTTTATCAATTAGG
TTTCCAAAAAATGACCACCCATTCCGTTGTTGACCTGCGCTCGGACACCG
TCAGCCAGCCGACGGACAAGATGCGGGCCCGGATGGCCACCGCCGTGGTC
GGGGATGACGTTTATGGCGAGGATCCCACCGTCAACGAACTGGAGGCGCG
AACAGCGGCCATTTTCGGCAAGGAGGCGGGCCTCTTTGTGCCCAGCGGCA
CCATGGGAAATCTACTGGCAATTATGGTTCACTGCCATCGTCGTGGCACG
GAGGCCCTGGTCGGCGATTTATCGCACATCTTTCTGTACGAACAAGGTGG
CGCCTCGCATTTGGCCGGAGTCCAATTAGCCACTCTGAAGAACGAGCAGG
ATGGCACCTTTAGTCTGCAGGATCTGCGCCGCAGGATACGCCACGAAGAC
TGCCACGAGCCCATCACCTCGCTGGTGGTGGTGGAGCAGACCCACAATAT
CTGCGGTGGCAAAGTGGTGCCTCTGGCCTTCTTGGATGAGCTAGCTGCTC
TGGTCCGACAGCCGGGCGTGGGCACTGGGAACGCCCGTATCGCTCTACAC
ATGGACGGAGCGAGGGTCTTTAATGCGGCCACCGCCTTGGGCGTGGGAGT
GGAGCGCATCTGCCGCGATTTCGATTCGGTATCTATCTGCCTCAGCAAGG
GCTTATCGGCTCCCGTGGGATCCGTGTTAGTCGGCTCCAAGGCCTTCATT
TCGGAAGCCCATCGACTGCGCAAAGCTTTGGGAGGCGGAATGCGGCAGGT
GGGAGTGTTAGCAGCAGCTGGACTGGTAGCTTTGGATGAAGTGGTACCAC
TTCTGAGCAAAGATCACGAGCGGACCAATAAAATTGCCAACGCTATATAT
GAACTGAAAAGTCCCAACATTACCGTACACGTGTCGTCTGTCCAGAGCAA
TATCCTTCTGGTAGAGATAACCCAACCCAAACTGACGGCCAGTGAGTTCT
CCACCCGGTTGAGCATCGTTGATGCTGGTGAAGTGGAAGCCGGAGTGAAG
GACAAAAACGGAGCCGGAATCGTGGTGAAGGCTAGTGCCCGGGATTGGGC
ATTTGCGAGACTTGTGCTCTACCATCAGGTGGACGATGAGCAAGTGGACC
TGGCCATCAGGAAGCTGAAGTACGTCATCGGCCAGTACGACAAGCAATTT
CCCAGGACCTAGACATTTGTAATTCTTTTGAATATTACTGGAAAGACAAA
CACAATTAGATTTTGCATTTTGTCGTTTAATTAAAGACATAGAGGGAGCA
AAAGAAAAAAAAAAAAAAAAAAAA

LD34157.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-RA 1473 CG10184-RA 56..1361 1..1306 6530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19426728..19427138 755..345 2010 99.3 Minus
chr3R 27901430 chr3R 19425881..19426294 1304..892 1945 98.6 Minus
chr3R 27901430 chr3R 19428188..19428401 271..58 1070 100 Minus
chr3R 27901430 chr3R 19426352..19426488 892..756 655 98.5 Minus
chr3R 27901430 chr3R 19427199..19427276 349..272 390 100 Minus
chr3R 27901430 chr3R 19428787..19428844 57..1 240 98.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23602505..23602919 1306..892 2075 100 Minus
3R 32079331 3R 23603354..23603764 755..345 2055 100 Minus
3R 32079331 3R 23604814..23605027 271..58 1070 100 Minus
3R 32079331 3R 23602977..23603113 892..756 685 100 Minus
3R 32079331 3R 23603825..23603902 349..272 390 100 Minus
3R 32079331 3R 23605413..23605469 57..1 285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23343336..23343750 1306..892 2075 100 Minus
3R 31820162 3R 23344185..23344595 755..345 2055 100 Minus
3R 31820162 3R 23345645..23345858 271..58 1070 100 Minus
3R 31820162 3R 23343808..23343944 892..756 685 100 Minus
3R 31820162 3R 23344656..23344733 349..272 390 100 Minus
3R 31820162 3R 23346244..23346300 57..1 285 100 Minus
Blast to na_te.dros performed 2019-03-16 20:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 2532..2666 1061..1199 117 57.9 Plus

LD34157.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:38:15 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19425881..19426293 893..1304 98 <- Minus
chr3R 19426352..19426488 756..892 98 <- Minus
chr3R 19426728..19427136 347..755 99 <- Minus
chr3R 19427202..19427276 272..346 100 <- Minus
chr3R 19428188..19428401 58..271 100 <- Minus
chr3R 19428787..19428844 1..57 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:02 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 1..1152 61..1212 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:18:44 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 1..1152 61..1212 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:33 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 1..1152 61..1212 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:21 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 1..1152 61..1212 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:39 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 1..1152 61..1212 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:14:10 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 19..1322 1..1304 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:18:44 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 19..1322 1..1304 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:33 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 27..1330 1..1304 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:21 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 19..1322 1..1304 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:39 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 27..1330 1..1304 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:15 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23603354..23603762 347..755 100 <- Minus
3R 23603828..23603902 272..346 100 <- Minus
3R 23602507..23602918 893..1304 100 <- Minus
3R 23602977..23603113 756..892 100 <- Minus
3R 23604814..23605027 58..271 100 <- Minus
3R 23605413..23605469 1..57 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:15 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23603354..23603762 347..755 100 <- Minus
3R 23603828..23603902 272..346 100 <- Minus
3R 23602507..23602918 893..1304 100 <- Minus
3R 23602977..23603113 756..892 100 <- Minus
3R 23604814..23605027 58..271 100 <- Minus
3R 23605413..23605469 1..57 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:15 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23603354..23603762 347..755 100 <- Minus
3R 23603828..23603902 272..346 100 <- Minus
3R 23602507..23602918 893..1304 100 <- Minus
3R 23602977..23603113 756..892 100 <- Minus
3R 23604814..23605027 58..271 100 <- Minus
3R 23605413..23605469 1..57 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:33 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19430536..19430749 58..271 100 <- Minus
arm_3R 19431135..19431191 1..57 100   Minus
arm_3R 19428229..19428640 893..1304 100 <- Minus
arm_3R 19428699..19428835 756..892 100 <- Minus
arm_3R 19429076..19429484 347..755 100 <- Minus
arm_3R 19429550..19429624 272..346 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:28:37 Download gff for LD34157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23346244..23346300 1..57 100   Minus
3R 23343338..23343749 893..1304 100 <- Minus
3R 23343808..23343944 756..892 100 <- Minus
3R 23344185..23344593 347..755 100 <- Minus
3R 23344659..23344733 272..346 100 <- Minus
3R 23345645..23345858 58..271 100 <- Minus

LD34157.pep Sequence

Translation from 60 to 1211

> LD34157.pep
MTTHSVVDLRSDTVSQPTDKMRARMATAVVGDDVYGEDPTVNELEARTAA
IFGKEAGLFVPSGTMGNLLAIMVHCHRRGTEALVGDLSHIFLYEQGGASH
LAGVQLATLKNEQDGTFSLQDLRRRIRHEDCHEPITSLVVVEQTHNICGG
KVVPLAFLDELAALVRQPGVGTGNARIALHMDGARVFNAATALGVGVERI
CRDFDSVSICLSKGLSAPVGSVLVGSKAFISEAHRLRKALGGGMRQVGVL
AAAGLVALDEVVPLLSKDHERTNKIANAIYELKSPNITVHVSSVQSNILL
VEITQPKLTASEFSTRLSIVDAGEVEAGVKDKNGAGIVVKASARDWAFAR
LVLYHQVDDEQVDLAIRKLKYVIGQYDKQFPRT*

LD34157.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18752-PA 382 GF18752-PA 2..381 3..382 1766 86.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12420-PA 384 GG12420-PA 1..384 1..383 1910 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19068-PA 379 GH19068-PA 2..379 3..381 1497 72.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-PA 383 CG10184-PA 1..383 1..383 1927 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10703-PA 383 GI10703-PA 5..383 2..381 1537 74.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13839-PA 380 GL13839-PA 3..380 4..383 1629 81.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10138-PA 380 GA10138-PA 3..380 4..383 1635 81.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23553-PA 383 GM23553-PA 1..383 1..383 1925 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18368-PA 383 GD18368-PA 1..383 1..383 1938 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23119-PA 379 GJ23119-PA 4..379 5..381 1538 75.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13412-PA 380 GK13412-PA 1..379 1..380 1579 78.2 Plus
Dwil\GK21059-PA 379 GK21059-PA 1..377 1..382 1408 68.1 Plus
Dwil\GK19951-PA 140 GK19951-PA 2..139 242..383 395 54.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23939-PA 384 GE23939-PA 3..384 2..383 1918 94.5 Plus

LD34157.hyp Sequence

Translation from 60 to 1211

> LD34157.hyp
MTTHSVVDLRSDTVSQPTDKMRARMATAVVGDDVYGEDPTVNELEARTAA
IFGKEAGLFVPSGTMGNLLAIMVHCHRRGTEALVGDLSHIFLYEQGGASH
LAGVQLATLKNEQDGTFSLQDLRRRIRHEDCHEPITSLVVVEQTHNICGG
KVVPLAFLDELAALVRQPGVGTGNARIALHMDGARVFNAATALGVGVERI
CRDFDSVSICLSKGLSAPVGSVLVGSKAFISEAHRLRKALGGGMRQVGVL
AAAGLVALDEVVPLLSKDHERTNKIANAIYELKSPNITVHVSSVQSNILL
VEITQPKLTASEFSTRLSIVDAGEVEAGVKDKNGAGIVVKASARDWAFAR
LVLYHQVDDEQVDLAIRKLKYVIGQYDKQFPRT*

LD34157.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-PA 383 CG10184-PA 1..383 1..383 1927 100 Plus