Clone LD34179 Report

Search the DGRC for LD34179

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:341
Well:79
Vector:pOT2
Associated Gene/TranscriptTorsin-RA
Protein status:LD34179.pep: gold
Preliminary Size:1374
Sequenced Size:1174

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3024 2001-01-01 Release 2 assignment
CG3024 2003-01-01 Sim4 clustering to Release 3
CG3024 2003-01-14 Blastp of sequenced clone
torp4a 2008-04-29 Release 5.5 accounting
torp4a 2008-08-15 Release 5.9 accounting
torp4a 2008-12-18 5.12 accounting

Clone Sequence Records

LD34179.complete Sequence

1174 bp (1174 high quality bases) assembled on 2003-01-14

GenBank Submission: AY069592

> LD34179.complete
CCCATCTATACATTCCACCGCGGAATTTTCCTTGCATTTTATGATGAGCT
TTCCACGCATGTTATCACTGTGCCTTAGCGTGCTTGTAATACTGCCGCTT
CCCCTCCAGTCGGTGGATCCCCTGACCATTGGTGCCGTTGGCGCCGTGGC
CCTTGGGGCGTACTTCAAAGAACATACATATTGCCGGTTTGCCGAATGCT
GCGATGACCGAAACATTCCGGCGAGAATAGATGAATTAGAAAGATCCCTG
GAACGCACCCTCATTGGCCAGCACATCGTGAGGCAGCATATCGTCCCCGC
ACTGAAGGCGCACATCGCTTCGGGCAATAAGTCACGGAAACCGCTGGTCA
TCAGCTTTCACGGCCAGCCCGGTACGGGCAAGAATTTTGTGGCTGAGCAA
ATTGCAGATGCTATGTATTTGAAGGGCTCCAGGTCGAACTATGTAACCAA
GTATCTCGGACAAGCTGACTTTCCCAAGGAAAGTGAGGTGTCTAACTATA
GGGTGAAAATCAATAATGCGGTGCGCGATACCTTGCGTAGCTGCCCGAGA
TCTTTGTTCATCTTCGACGAGGTGGATAAAATGCCCAGCGGAGTATTCGA
CCAGCTCACCTCGCTGGTGGACTACAACGCCTTTGTCGATGGCACGGATA
ACACAAAGGCAATCTTCATCTTTCTCTCGAACACGGCGGGCAGTCATATA
GCCAGTCATCTGGGTAGTGTGATGAAGAATGGTAGGCTGCGCGAGGACAC
ACGACTGAGTGACTTTGAGCCCCTTTTGCGGAAGGCCGCCTATAACATGG
ATGGCGGTATGAAAAAGACCACCATGATTGAGTCTCATGTTATCGATCAT
TTCATTCCGTTCCTGCCGATGGAGAAGGCGCATGTGATCAAGTGCCTGGA
GGCGGAGCTTTTAAGGTGGCGGCGCGATCCTAAGCAAGCGAACAACCAAA
AAATCATTGAGGACATAATAAACTCCTCCATTAGTTACGATCGCACGCAC
AGCTTGTTCGCCATTTCGGGCTGCAAGACGCTGGAGAAGAAGGTGGCCAT
GGCCATTTACTGAGAAAGGACCGACCGACTCCACATTTTAATGCTTAGTT
TGGGTTTCGGTTTGTATTTAAAAAACTATTTTTTCGGAATAAAGAAAACA
AATTTTAAAAAAAAAAAAAAAAAA

LD34179.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
torp4a-RA 1335 torp4a-RA 178..1335 1..1158 5790 100 Plus
torp4a.b 1339 torp4a.b 178..1339 1..1158 5725 99.6 Plus
torp4a.a 1363 torp4a.a 178..1287 1..1110 5550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4541384..4542307 1156..233 4620 100 Minus
chrX 22417052 chrX 4542365..4542597 233..1 1165 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4648590..4649515 1158..233 4630 100 Minus
X 23542271 X 4649573..4649805 233..1 1165 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4656688..4657613 1158..233 4630 100 Minus
X 23527363 X 4657671..4657903 233..1 1165 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:03:44 has no hits.

LD34179.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:04:48 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4541384..4542306 234..1156 100 <- Minus
chrX 4542365..4542597 1..233 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:03 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
torp4a-RA 1..1023 41..1063 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:03 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
torp4a-RA 1..1023 41..1063 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:51:09 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
Torsin-RA 1..1023 41..1063 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:55 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
torp4a-RA 1..1023 41..1063 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:25:18 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
Torsin-RA 1..1023 41..1063 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:13:01 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
torp4a-RA 28..1183 1..1156 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:03 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
torp4a-RA 28..1183 1..1156 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:09 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
Torsin-RA 29..1184 1..1156 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:55 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
torp4a-RA 28..1183 1..1156 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:25:18 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
Torsin-RA 29..1184 1..1156 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:48 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
X 4648592..4649514 234..1156 100 <- Minus
X 4649573..4649805 1..233 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:48 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
X 4648592..4649514 234..1156 100 <- Minus
X 4649573..4649805 1..233 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:48 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
X 4648592..4649514 234..1156 100 <- Minus
X 4649573..4649805 1..233 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:09 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4542625..4543547 234..1156 100 <- Minus
arm_X 4543606..4543838 1..233 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:14 Download gff for LD34179.complete
Subject Subject Range Query Range Percent Splice Strand
X 4656690..4657612 234..1156 100 <- Minus
X 4657671..4657903 1..233 100   Minus

LD34179.hyp Sequence

Translation from 0 to 1062

> LD34179.hyp
PSIHSTAEFSLHFMMSFPRMLSLCLSVLVILPLPLQSVDPLTIGAVGAVA
LGAYFKEHTYCRFAECCDDRNIPARIDELERSLERTLIGQHIVRQHIVPA
LKAHIASGNKSRKPLVISFHGQPGTGKNFVAEQIADAMYLKGSRSNYVTK
YLGQADFPKESEVSNYRVKINNAVRDTLRSCPRSLFIFDEVDKMPSGVFD
QLTSLVDYNAFVDGTDNTKAIFIFLSNTAGSHIASHLGSVMKNGRLREDT
RLSDFEPLLRKAAYNMDGGMKKTTMIESHVIDHFIPFLPMEKAHVIKCLE
AELLRWRRDPKQANNQKIIEDIINSSISYDRTHSLFAISGCKTLEKKVAM
AIY*

LD34179.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
Torsin-PB 340 CG3024-PB 1..340 14..353 1754 100 Plus
Torsin-PA 340 CG3024-PA 1..340 14..353 1754 100 Plus

LD34179.pep Sequence

Translation from 40 to 1062

> LD34179.pep
MMSFPRMLSLCLSVLVILPLPLQSVDPLTIGAVGAVALGAYFKEHTYCRF
AECCDDRNIPARIDELERSLERTLIGQHIVRQHIVPALKAHIASGNKSRK
PLVISFHGQPGTGKNFVAEQIADAMYLKGSRSNYVTKYLGQADFPKESEV
SNYRVKINNAVRDTLRSCPRSLFIFDEVDKMPSGVFDQLTSLVDYNAFVD
GTDNTKAIFIFLSNTAGSHIASHLGSVMKNGRLREDTRLSDFEPLLRKAA
YNMDGGMKKTTMIESHVIDHFIPFLPMEKAHVIKCLEAELLRWRRDPKQA
NNQKIIEDIINSSISYDRTHSLFAISGCKTLEKKVAMAIY*

LD34179.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20855-PA 340 GF20855-PA 1..339 2..339 1256 70.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18527-PA 341 GG18527-PA 18..340 19..339 1338 78.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17629-PA 278 GH17629-PA 1..271 63..337 881 58.5 Plus
Dgri\GH17628-PA 271 GH17628-PA 1..264 63..337 843 57.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Torsin-PB 340 CG3024-PB 1..340 1..340 1754 100 Plus
Torsin-PA 340 CG3024-PA 1..340 1..340 1754 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16067-PA 333 GI16067-PA 14..329 22..340 988 55.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14553-PA 313 GL14553-PA 1..312 25..339 1081 62.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15729-PA 313 GA15729-PA 1..312 25..339 1075 62.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12675-PA 340 GM12675-PA 1..340 2..340 1580 86.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16282-PA 340 GD16282-PA 1..340 2..340 1537 86.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15712-PA 338 GJ15712-PA 17..332 22..339 1032 59.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16456-PA 341 GK16456-PA 27..340 24..339 1079 61.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16843-PA 341 GE16843-PA 1..340 2..339 1512 80 Plus