Clone LD34262 Report

Search the DGRC for LD34262

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:342
Well:62
Vector:pOT2
Associated Gene/Transcriptpelo-RA
Protein status:LD34262.pep: gold
Preliminary Size:2258
Sequenced Size:2102

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3959 2001-01-01 Release 2 assignment
CG3959 2001-09-19 Blastp of sequenced clone
CG3959 2003-01-01 Sim4 clustering to Release 3
pelo 2008-04-29 Release 5.5 accounting
pelo 2008-08-15 Release 5.9 accounting
pelo 2008-12-18 5.12 accounting

Clone Sequence Records

LD34262.complete Sequence

2102 bp (2102 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058644

> LD34262.complete
TTCGCCCCTGGTGAATGTCACTTGGCCGCCGATTCTACTGACCACCACCA
TTGCCACACCATCCTGCCGATTCGATCAGCGGTGTGAACTTAGCAACTGC
GTGAACCCAATGACAACGATGCACCGCCGCCTTTGTGAACGGAGGGAATT
ACTGGAATCTGGGTGCAAGTGACAAGCGGCTAGAGGAATCAAAGCACTCG
GTATAAAGGCAGTGCCTGCCGACGAAACAAATACCAAATCCTGACCAGCA
ACGAGACGGGATGAAGCTGCTGGGCAAATACGTGGACAAGGGCATGCAGG
GAAATGTGACCCTGGTGCCGGAGGAGTCCGAGGATATGTGGCACGCCTAC
AATTTGATTGCGAAAGGCGACAGCGTGCGCAGCACCACTATTCGCAAGGT
GCAGAATGAAACGGCTACTGGCTCCTCCACCAGCAGCCGGGTGCGCACCA
CACTAACCATCGCAGTGGAGAGCATAGATTTTGATACGCAGGCTTGTGTG
CTCCGCCTTAAAGGCAGAAACATCGAGGAGAACCAGTATGTCAAGATGGG
CGCCTATCACACCCTCGACCTGGAGCTGAATCGCAAGTTCGAGCTGCGTA
AGCCGGAATGGGACACAATTGCCTTAGAGCGCATCGAAATGGCCTGCGAT
CCCACACAGTCTGCGGATGTAGCCGCCGTTGTGATGCAGGAGGGATTAGC
ACACGTCTGCCTGATCACCGCCAGTATGACCCTGGTGCGGAGCAAGATTG
AGGTCTCCATACCGCGCAAGCGCAAGGGCAGTGTCCAGCAACACGAGAAG
GGACTGGCCAAGTTCTACGAGCAGGTTATGCAGAGCATCCTGCGGCACGT
CAACTTCGATGTGGTCAAGTGTGTGTTGATTGCGTCGCCGGGATTCGTGC
GCGATCAGTTCTATGACTACATGTTCCAGCAGGCGGTCAAAATGGATTAC
AAGCTGCTGCTGGACAACAAGAGCAAGTTTATGCTGGTGCACGCATCCTC
GGGATTTAAGCACTCCTTAAGAGAAATTCTACAGGATCCCGCCGTGCTGG
CCAAGATGTCTGACACCAAGGCAGCTGGCGAGGTCAAGGCCCTGGAACAA
TTCTACATGATGCTGCAATGTGAGCCCGCCAAGGCCTTCTATGGAAAGAA
ACATGTCCTCCAAGCCGCCGAGTCGCAGGCCATCGAAACGCTGCTGATCT
CGGACAACCTCTTTAGATGCCAAGACGTTAGTCTGAGAAAGGAATATGTC
AATCTGGTCGAATCCATTCGCGATGCTGGGGGAGAAGTCAAAATCTTTTC
GAGCATGCACATCTCAGGAGAACAACTTGCTCAACTAACTGGAATTGCAG
CCCTCCTGCGCTTCCCGATGCCCGAACTGGAGGACAGCGACGATGATGAT
GATGAGGATGGAGCGGCAGGCGGGGTGGCAGATAGCGATAGCGACTAGGA
TCATAAATAGGAATAGCTTCATGGAATCTTGGCATTTGATAACGGAAAAT
TTTGACTTAGGAACTTAACTAGCGAGCGATATACAAGTAGACTAATAGGA
ACCACGACAGACTTGGACGTCAGGGCATATACAATATACATACATAGTGC
TAATTCAATACAATATACACACTGCTTAAGTTCACCCGTGGCTGGGCCTA
CAAATTCAACATTTTATATTCTTTGTGTTCAATTAAATGGCCACAATATT
GTTAGGTTTCAATTATTGCTTCATATGAGTTGCGTTAACTATATTCGGCA
AACTAAATTCCTTTCCGGCGCACTTAAATTCATTGTTCATTCATTTGTAA
AATGGAAAACGGAGGTTTACAAAATGATTAAAAACGGCATATAATATAGT
TATTTATCCAGTTTCGTTGTTTAAACCCGGATTTTATGCATCTTCAGAAC
GCTCTTAATGTTGCTTAACTTTATAAGATTTGTAATTATCATTTTATGCT
GTAAACATAACCCTTTGTTAAACCCTACTAGTTGATACAGAATGTAAGTA
ATTAACCATGCTGTAAAATATATAAATGTAAAATAAATCATTTTCAAGAA
TTCACCTAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

LD34262.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-RA 2214 pelo-RA 83..2147 1..2065 10325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9699979..9700701 301..1023 3600 99.9 Plus
chr2L 23010047 chr2L 9706979..9707708 1324..2062 3320 97.4 Plus
chr2L 23010047 chr2L 9699620..9699920 1..301 1505 100 Plus
chr2L 23010047 chr2L 9700755..9700949 1022..1216 975 100 Plus
chr2L 23010047 chr2L 9705473..9705581 1215..1323 530 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9708145..9708886 1324..2065 3710 100 Plus
2L 23513712 2L 9701152..9701874 301..1023 3615 100 Plus
2L 23513712 2L 9700793..9701093 1..301 1505 100 Plus
2L 23513712 2L 9701928..9702122 1022..1216 975 100 Plus
2L 23513712 2L 9706638..9706746 1215..1323 545 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9708145..9708886 1324..2065 3710 100 Plus
2L 23513712 2L 9701152..9701874 301..1023 3615 100 Plus
2L 23513712 2L 9700793..9701093 1..301 1505 100 Plus
2L 23513712 2L 9701928..9702122 1022..1216 975 100 Plus
2L 23513712 2L 9706638..9706746 1215..1323 545 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:28:58 has no hits.

LD34262.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:29:47 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9699620..9699920 1..301 100 -> Plus
chr2L 9699980..9700701 302..1023 99 -> Plus
chr2L 9700757..9700949 1024..1216 100 -> Plus
chr2L 9705475..9705581 1217..1323 99 -> Plus
chr2L 9706979..9707708 1324..2062 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:16 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 1..1188 261..1448 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:50 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 1..1188 261..1448 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:06:09 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 1..1188 261..1448 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:16 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 1..1188 261..1448 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:13 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 1..1188 261..1448 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:28 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 1..2037 4..2040 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:50 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 1..2059 4..2062 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:06:09 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 1..2045 18..2062 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:16 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 1..2037 4..2040 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:13 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 1..2045 18..2062 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:47 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9700793..9701093 1..301 100 -> Plus
2L 9701153..9701874 302..1023 100 -> Plus
2L 9701930..9702122 1024..1216 100 -> Plus
2L 9706640..9706746 1217..1323 100 -> Plus
2L 9708145..9708883 1324..2062 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:47 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9700793..9701093 1..301 100 -> Plus
2L 9701153..9701874 302..1023 100 -> Plus
2L 9701930..9702122 1024..1216 100 -> Plus
2L 9706640..9706746 1217..1323 100 -> Plus
2L 9708145..9708883 1324..2062 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:47 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9700793..9701093 1..301 100 -> Plus
2L 9701153..9701874 302..1023 100 -> Plus
2L 9701930..9702122 1024..1216 100 -> Plus
2L 9706640..9706746 1217..1323 100 -> Plus
2L 9708145..9708883 1324..2062 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:06:09 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9700793..9701093 1..301 100 -> Plus
arm_2L 9701153..9701874 302..1023 100 -> Plus
arm_2L 9701930..9702122 1024..1216 100 -> Plus
arm_2L 9706640..9706746 1217..1323 100 -> Plus
arm_2L 9708145..9708883 1324..2062 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:47 Download gff for LD34262.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9701930..9702122 1024..1216 100 -> Plus
2L 9706640..9706746 1217..1323 100 -> Plus
2L 9700793..9701093 1..301 100 -> Plus
2L 9701153..9701874 302..1023 100 -> Plus
2L 9708145..9708883 1324..2062 100   Plus

LD34262.hyp Sequence

Translation from 260 to 1447

> LD34262.hyp
MKLLGKYVDKGMQGNVTLVPEESEDMWHAYNLIAKGDSVRSTTIRKVQNE
TATGSSTSSRVRTTLTIAVESIDFDTQACVLRLKGRNIEENQYVKMGAYH
TLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQEGLAHVC
LITASMTLVRSKIEVSIPRKRKGSVQQHEKGLAKFYEQVMQSILRHVNFD
VVKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKFMLVHASSGFK
HSLREILQDPAVLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVL
QAAESQAIETLLISDNLFRCQDVSLRKEYVNLVESIRDAGGEVKIFSSMH
ISGEQLAQLTGIAALLRFPMPELEDSDDDDDEDGAAGGVADSDSD*

LD34262.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-PA 395 CG3959-PA 1..395 1..395 1999 100 Plus

LD34262.pep Sequence

Translation from 260 to 1447

> LD34262.pep
MKLLGKYVDKGMQGNVTLVPEESEDMWHAYNLIAKGDSVRSTTIRKVQNE
TATGSSTSSRVRTTLTIAVESIDFDTQACVLRLKGRNIEENQYVKMGAYH
TLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQEGLAHVC
LITASMTLVRSKIEVSIPRKRKGSVQQHEKGLAKFYEQVMQSILRHVNFD
VVKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKFMLVHASSGFK
HSLREILQDPAVLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVL
QAAESQAIETLLISDNLFRCQDVSLRKEYVNLVESIRDAGGEVKIFSSMH
ISGEQLAQLTGIAALLRFPMPELEDSDDDDDEDGAAGGVADSDSD*

LD34262.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22793-PA 394 GF22793-PA 1..371 1..371 1940 96 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10049-PA 392 GG10049-PA 1..392 1..393 2070 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25139-PA 394 GH25139-PA 1..373 1..373 1933 94.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-PA 395 CG3959-PA 1..395 1..395 1999 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20011-PA 394 GI20011-PA 1..373 1..373 1930 94.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18928-PA 394 GL18928-PA 1..373 1..373 1952 96 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17805-PA 394 GA17805-PA 1..373 1..373 1952 96 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17647-PA 394 GM17647-PA 1..394 1..395 2085 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23623-PA 394 GD23623-PA 1..394 1..395 2091 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13438-PA 394 GJ13438-PA 1..374 1..374 1940 94.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24186-PA 396 GK24186-PA 1..396 1..395 1963 94.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18863-PA 394 GE18863-PA 1..394 1..395 2080 98 Plus