Clone LD34388 Report

Search the DGRC for LD34388

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:343
Well:88
Vector:pOT2
Associated Gene/TranscriptCG31650-RB
Protein status:LD34388.pep: gold
Preliminary Size:1544
Sequenced Size:1494

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9112 2001-01-01 Release 2 assignment
CG31650 2001-10-10 Blastp of sequenced clone
CG31650 2003-01-01 Sim4 clustering to Release 3
CG31650 2008-04-29 Release 5.5 accounting
CG31650 2008-08-15 Release 5.9 accounting
CG31650 2008-12-18 5.12 accounting

Clone Sequence Records

LD34388.complete Sequence

1494 bp (1494 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061412

> LD34388.complete
TAAACGAATTTTTATGTGAACATGTATTAATATGTATAGCAGGCGAAAGG
TGAACTGAGTTCATTGTGCTGTTGGGCATTACGTGTGCGTCCATCCGGTC
TCCCTCCTCCGCCGGAACATCATCCCCCCCATCCACTCGAGAACTCGGGA
AGCTGCCAAAAAAAAAGAGAAAACAAAGACCAAAGAACACGCCGCTTGGC
ATAATCAATTAAAATGCCTAGGAATCTGCCGCTCCTCCCGCTGACCCTCT
GTGCCGTCGCCTTGCTGGCCGCCGTGGGTCCCATGCCCGCCCATGGGGCG
GTGGCCAACAGTCACAAGCACGAGAAGCACCTTAGCAAGGAGCGGGTCAA
GGACGGCATCTACGCTCCCCGGGATGCCCACCACCACGGCGAGGATGGGG
AGCACAACGTGGAGTTCGATCACGAGGCCATCATCGGCAACACGAAAGAG
GCTCAGGAATTCGACTCACTTTCGCCAGACGAATCGAAGCGACGACTGTT
GATATTGATCAAAATGATGGATCTGAATAAGGACGAATTTATTGACCGGC
ATGAGTTGAAAGCCTGGATATTAAGGTCCTTTAAAAAACTGTCGGAGGAA
GAAGCCGCTGATCGATTTGAAGAAATAGACCAGGATGCGGACGAGAGAAT
TACGTGGAAGGAGTATCTCCAGGACACATACGCCATGGAGGATGAGGACT
TCAAGAAGGAGACCATCGACTACGACAGCTACGAGGATGAGCAGAAGATG
ATCAAGCAGGACAAGGAGATGTTCAATGCGGCCGACACGAACAAGGATGG
TGTGCTGACGCTGGAGGAATTCGTTTTATTCCAAAATCCCGAGGAGCATC
CACAAATGTTGCCAATACTGCTGGAGCACACGATGCAGGACAAAGATGCG
GATCACGATGGCAAGATCAACTTCCAGGAGTTTGTCGGCGACGCAGCCTC
GCACCACGACAAGGAGTGGCTGATCACGGAGAAGGAGCGCTTCGACAAGG
ATCACGACTCCAATGGCGATGGCGTGCTGACGGGCGATGAGGTCTTATCC
TGGATTGTGCCAAGCAATACGGCAATTGCCAACGACGAGGTGGACCATCT
CTTTGTCTCCACCGATGAGGATCACGACGATCGCCTGTCCTACCTGGAAA
TACTCAACAACTACGATACCTTTGTGGGCAGTGAGGCCACCGACTACGGC
GACCATTTACAAAACATTAACCATCTCTCCGACGAGCTCTAGATGCCATT
CAAAGCCCCATCGTGCTATAGTGAACCTGTGCTTAGTATTGTATTTCGTT
TAAATAGTTAGTAAATTTATGTTTATTTATGTAAATTCAAGTGACAATTG
CAAATCAATATCGCCAAATTCTTTTGAGCACTTCTTACGAATTTAATTTT
CAATACTATTTCGTTTGTTTCGTCATGTATCAATTACATTATGTGTAGTA
ATTTATATAAACAGAAACAAAAATCTAAAAAAAAAAAAAAAAAA

LD34388.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31650-RD 1619 CG31650-RD 177..1616 38..1477 7200 100 Plus
CG31650-RB 1817 CG31650-RB 265..1704 38..1477 7200 100 Plus
CG31650.a 1644 CG31650.a 198..1636 39..1477 7195 100 Plus
CG31650-RD 1619 CG31650-RD 43..81 1..39 195 100 Plus
CG31650-RB 1817 CG31650-RB 108..146 1..39 195 100 Plus
CG31650.a 1644 CG31650.a 43..81 1..39 195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5039748..5040639 1476..585 4460 100 Minus
chr2L 23010047 chr2L 5041590..5041989 437..38 2000 100 Minus
chr2L 23010047 chr2L 5040789..5040937 584..436 745 100 Minus
chr2L 23010047 chr2L 5042178..5042216 39..1 195 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5040647..5041539 1477..585 4465 100 Minus
2L 23513712 2L 5042490..5042889 437..38 2000 100 Minus
2L 23513712 2L 5041689..5041837 584..436 745 100 Minus
2L 23513712 2L 5043078..5043116 39..1 195 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5040647..5041539 1477..585 4465 100 Minus
2L 23513712 2L 5042490..5042889 437..38 2000 100 Minus
2L 23513712 2L 5041689..5041837 584..436 745 100 Minus
2L 23513712 2L 5043078..5043116 39..1 195 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:02:58 has no hits.

LD34388.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:03:41 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5039748..5040639 585..1476 100 <- Minus
chr2L 5040789..5040936 437..584 100 <- Minus
chr2L 5041591..5041987 40..436 100 <- Minus
chr2L 5042178..5042216 1..39 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:22 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31650-RC 1..1029 214..1242 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:17 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31650-RC 1..1029 214..1242 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:08:39 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31650-RD 1..1029 214..1242 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:18 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31650-RC 1..1029 214..1242 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:05 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31650-RD 1..1029 214..1242 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:42 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31650-RC 40..1515 1..1476 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:17 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31650-RC 43..1518 1..1476 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:39 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31650-RC 43..1521 1..1476 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:19 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31650-RC 40..1515 1..1476 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:05 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31650-RC 43..1521 1..1476 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:41 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5040648..5041539 585..1476 100 <- Minus
2L 5041689..5041836 437..584 100 <- Minus
2L 5042491..5042887 40..436 100 <- Minus
2L 5043078..5043116 1..39 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:41 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5040648..5041539 585..1476 100 <- Minus
2L 5041689..5041836 437..584 100 <- Minus
2L 5042491..5042887 40..436 100 <- Minus
2L 5043078..5043116 1..39 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:41 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5040648..5041539 585..1476 100 <- Minus
2L 5041689..5041836 437..584 100 <- Minus
2L 5042491..5042887 40..436 100 <- Minus
2L 5043078..5043116 1..39 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:39 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5041689..5041836 437..584 100 <- Minus
arm_2L 5040648..5041539 585..1476 100 <- Minus
arm_2L 5042491..5042887 40..436 100 <- Minus
arm_2L 5043078..5043116 1..39 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:26 Download gff for LD34388.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5043078..5043116 1..39 100   Minus
2L 5040648..5041539 585..1476 100 <- Minus
2L 5041689..5041836 437..584 100 <- Minus
2L 5042491..5042887 40..436 100 <- Minus

LD34388.pep Sequence

Translation from 213 to 1241

> LD34388.pep
MPRNLPLLPLTLCAVALLAAVGPMPAHGAVANSHKHEKHLSKERVKDGIY
APRDAHHHGEDGEHNVEFDHEAIIGNTKEAQEFDSLSPDESKRRLLILIK
MMDLNKDEFIDRHELKAWILRSFKKLSEEEAADRFEEIDQDADERITWKE
YLQDTYAMEDEDFKKETIDYDSYEDEQKMIKQDKEMFNAADTNKDGVLTL
EEFVLFQNPEEHPQMLPILLEHTMQDKDADHDGKINFQEFVGDAASHHDK
EWLITEKERFDKDHDSNGDGVLTGDEVLSWIVPSNTAIANDEVDHLFVST
DEDHDDRLSYLEILNNYDTFVGSEATDYGDHLQNINHLSDEL*

LD34388.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14160-PA 343 GF14160-PA 18..343 16..342 1579 91.4 Plus
Dana\GF24450-PA 329 GF24450-PA 45..323 58..332 462 37.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24324-PA 342 GG24324-PA 1..342 1..342 1769 97.1 Plus
Dere\GG14777-PA 329 GG14777-PA 45..323 58..332 481 38.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10271-PA 342 GH10271-PA 1..342 1..342 1561 83 Plus
Dgri\GH15448-PA 328 GH15448-PA 44..322 58..332 442 37.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31650-PF 342 CG31650-PF 1..342 1..342 1818 100 Plus
CG31650-PE 342 CG31650-PE 1..342 1..342 1818 100 Plus
CG31650-PD 342 CG31650-PD 1..342 1..342 1818 100 Plus
CG31650-PC 342 CG31650-PC 1..342 1..342 1818 100 Plus
CG31650-PB 342 CG31650-PB 1..342 1..342 1818 100 Plus
CG31650-PA 342 CG31650-PA 1..342 1..342 1818 100 Plus
CG31650-PG 339 CG31650-PG 1..339 1..342 1789 99.1 Plus
scf-PA 329 CG9148-PA 6..323 8..332 552 36.7 Plus
scf-PB 192 CG9148-PB 1..186 152..332 351 37.6 Plus
CG31475-PB 418 CG31475-PB 102..409 35..327 176 22.6 Plus
CG31475-PA 418 CG31475-PA 102..409 35..327 176 22.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15682-PA 341 GI15682-PA 4..341 5..342 1563 86.4 Plus
Dmoj\GI13049-PA 326 GI13049-PA 42..320 58..332 519 40.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26479-PA 345 GL26479-PA 1..345 1..342 1607 87.6 Plus
Dper\GL16174-PA 321 GL16174-PA 31..315 47..332 485 36.8 Plus
Dper\GL13125-PA 300 GL13125-PA 20..300 62..338 384 33.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16367-PA 345 GA16367-PA 1..345 1..342 1607 87.6 Plus
Dpse\GA21575-PA 328 GA21575-PA 38..322 47..332 485 36.8 Plus
Dpse\GA23070-PA 314 GA23070-PA 48..308 62..332 382 34.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18042-PA 342 GM18042-PA 1..342 1..342 1790 99.1 Plus
Dsec\GM14396-PA 329 GM14396-PA 1..323 1..332 498 36.2 Plus
Dsec\GM12990-PA 329 GM12990-PA 1..323 1..332 498 36.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11983-PA 342 GD11983-PA 1..342 1..342 1788 98.8 Plus
Dsim\GD13605-PA 329 GD13605-PA 45..323 58..332 485 39.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10155-PA 342 GJ10155-PA 1..342 1..342 1589 85.7 Plus
Dvir\GJ12145-PA 326 GJ12145-PA 42..320 58..332 502 39.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24151-PA 332 GK24151-PA 1..332 13..342 1514 85.8 Plus
Dwil\GK20385-PA 326 GK20385-PA 42..320 58..332 437 38.6 Plus
Dwil\GK13801-PA 532 GK13801-PA 271..526 92..330 150 26.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18703-PA 342 GE18703-PA 1..342 1..342 1781 98 Plus
Dyak\GE21140-PA 328 GE21140-PA 44..322 58..332 483 38.2 Plus

LD34388.hyp Sequence

Translation from 213 to 1241

> LD34388.hyp
MPRNLPLLPLTLCAVALLAAVGPMPAHGAVANSHKHEKHLSKERVKDGIY
APRDAHHHGEDGEHNVEFDHEAIIGNTKEAQEFDSLSPDESKRRLLILIK
MMDLNKDEFIDRHELKAWILRSFKKLSEEEAADRFEEIDQDADERITWKE
YLQDTYAMEDEDFKKETIDYDSYEDEQKMIKQDKEMFNAADTNKDGVLTL
EEFVLFQNPEEHPQMLPILLEHTMQDKDADHDGKINFQEFVGDAASHHDK
EWLITEKERFDKDHDSNGDGVLTGDEVLSWIVPSNTAIANDEVDHLFVST
DEDHDDRLSYLEILNNYDTFVGSEATDYGDHLQNINHLSDEL*

LD34388.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31650-PF 342 CG31650-PF 1..342 1..342 1818 100 Plus
CG31650-PE 342 CG31650-PE 1..342 1..342 1818 100 Plus
CG31650-PD 342 CG31650-PD 1..342 1..342 1818 100 Plus
CG31650-PC 342 CG31650-PC 1..342 1..342 1818 100 Plus
CG31650-PB 342 CG31650-PB 1..342 1..342 1818 100 Plus