Clone LD34406 Report

Search the DGRC for LD34406

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:344
Well:6
Vector:pOT2
Associated Gene/Transcriptmgr-RA
Protein status:LD34406.pep: gold
Preliminary Size:1110
Sequenced Size:988

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6719 2001-01-01 Release 2 assignment
CG6719 2003-01-14 Blastp of sequenced clone
CG6719 2008-04-29 Release 5.5 accounting
CG6719 2008-08-15 Release 5.9 accounting
CG6719 2008-12-18 5.12 accounting

Clone Sequence Records

LD34406.complete Sequence

988 bp (988 high quality bases) assembled on 2003-01-14

GenBank Submission: BT003247

> LD34406.complete
ATCGACTTTTACAGCGGCAGGCTGACCTCCTGAAAATTAAATTGCATTTG
TAGACGGCACGGCTGAAGGCAACAGGATGACAGGAATAATGGACTCGGTG
GAAATGCCCAAATTACCGGAAAACCAGAAGACCTTCGCCGGCATCCCGGA
GGCAGTGTTCCTGGAGGAGATCGACACCTTCATGTCGCAGCCGGAGAACG
AAAATTGCGAAAAGGTGCTGCAGCGACTGGACGAGCAGCACGGCAAGTAT
CGATTCATGGCCTGCAATCTGGAGGCGCGGCGGCGCAAGTTGAAGTCTCA
AATTCCGGACCTGGAGCGCTCCCTGGAAATGGTCAATGTGCTTCGCAAGG
AGGACGAGGAGCGCGAGACGCAATTCCTGCTCAGCGACCAGGTGTTCATC
AAGACACTGGTGCCGCCCACGAAAACAGTATACCTCTGGCTGGGGGCCAG
CGTGATGCTGGAGTATCCGCTAGACGAGGCGGAGGCTCTGCTGAACCAGA
ACATCACATCGGCCGTGGGCAACCTAAAGTCCGTGGAGCACGATCAGGAT
TTTCTGAGGGATCAAATCACAACTACGGAGGTGAACATGGCGCGGGTCTA
CAACTGGGGCGTGAAAAAGCGGCAGGCCGCTACCAAGACCACCGCCACTA
CCCCATCCTAAGGAGACCCACCCAAATCCCATCCCAAGATCAACATCGGT
AGCAGCCACTCGCATCTTATTTATTTCGACAGTACACCGCAAGGGCTCGG
CAGGCGATTCCACCTGGCTTATTCTTGTTCTCCACTGATAGCAATAAAAC
CGCCACACAAACGCATCAAGCTGACTCCAAACGAGATGCCTATTCCGGAG
GAATGTAATATTTTAATTTGGCTACGGGCATTTAACTGCATGTAAACCGA
ATAAACGGCGAACGCAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD34406.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6719-RA 1022 CG6719-RA 44..960 1..917 4585 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7234679..7235075 559..163 1985 100 Minus
chr3R 27901430 chr3R 7234260..7234620 917..557 1760 99.2 Minus
chr3R 27901430 chr3R 7235151..7235314 164..1 820 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11409209..11409605 559..163 1985 100 Minus
3R 32079331 3R 11408790..11409150 917..557 1805 100 Minus
3R 32079331 3R 11409681..11409844 164..1 820 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11150040..11150436 559..163 1985 100 Minus
3R 31820162 3R 11149621..11149981 917..557 1805 100 Minus
3R 31820162 3R 11150512..11150675 164..1 820 100 Minus
Blast to na_te.dros performed 2019-03-16 19:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 6515..6561 792..838 109 70.2 Plus

LD34406.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:56:27 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7234262..7234618 559..915 99 <- Minus
chr3R 7234680..7235074 164..558 100 <- Minus
chr3R 7235152..7235314 1..163 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:23 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
CG6719-RA 1..585 77..661 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:05 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
CG6719-RA 1..585 77..661 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:35:38 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 1..585 77..661 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:57 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
CG6719-RA 1..585 77..661 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:29 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 1..585 77..661 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:13:05 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
CG6719-RA 34..948 1..915 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:05 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
CG6719-RA 44..958 1..915 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:38 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 32..946 1..915 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:57 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
CG6719-RA 34..948 1..915 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:29 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 32..946 1..915 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:56:27 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11409210..11409604 164..558 100 <- Minus
3R 11409682..11409844 1..163 100   Minus
3R 11408792..11409148 559..915 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:56:27 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11409210..11409604 164..558 100 <- Minus
3R 11409682..11409844 1..163 100   Minus
3R 11408792..11409148 559..915 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:56:27 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11409210..11409604 164..558 100 <- Minus
3R 11409682..11409844 1..163 100   Minus
3R 11408792..11409148 559..915 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:38 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7235404..7235566 1..163 100   Minus
arm_3R 7234514..7234870 559..915 100 <- Minus
arm_3R 7234932..7235326 164..558 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:16 Download gff for LD34406.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11149623..11149979 559..915 100 <- Minus
3R 11150041..11150435 164..558 100 <- Minus
3R 11150513..11150675 1..163 100   Minus

LD34406.pep Sequence

Translation from 76 to 660

> LD34406.pep
MTGIMDSVEMPKLPENQKTFAGIPEAVFLEEIDTFMSQPENENCEKVLQR
LDEQHGKYRFMACNLEARRRKLKSQIPDLERSLEMVNVLRKEDEERETQF
LLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEALLNQNITSAVGNL
KSVEHDQDFLRDQITTTEVNMARVYNWGVKKRQAATKTTATTPS*

LD34406.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18161-PA 194 GF18161-PA 1..194 1..194 992 94.8 Plus
Dana\GF13259-PA 197 GF13259-PA 1..197 1..193 168 28.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17226-PA 194 GG17226-PA 1..194 1..194 996 96.4 Plus
Dere\GG22129-PA 182 GG22129-PA 1..182 1..181 205 28.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24010-PA 196 GH24010-PA 1..196 1..194 972 92.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
mgr-PA 194 CG6719-PA 1..194 1..194 993 100 Plus
CG15676-PB 182 CG15676-PB 1..181 1..180 209 28.6 Plus
CG15676-PA 182 CG15676-PA 1..181 1..180 209 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10062-PA 195 GI10062-PA 1..195 1..194 972 93.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12609-PA 195 GL12609-PA 1..195 1..194 991 95.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19809-PA 195 GA19809-PA 1..195 1..194 991 95.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26102-PA 194 GM26102-PA 1..194 1..194 1033 99.5 Plus
Dsec\GM15853-PA 182 GM15853-PA 1..181 1..180 215 30.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20662-PA 194 GD20662-PA 1..194 1..194 1033 99.5 Plus
Dsim\GD11614-PA 182 GD11614-PA 1..181 1..180 218 30.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23797-PA 195 GJ23797-PA 1..195 1..194 981 94.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11798-PA 195 GK11798-PA 1..192 1..192 984 95.3 Plus
Dwil\GK19015-PA 192 GK19015-PA 1..179 1..178 244 30.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24626-PA 194 GE24626-PA 1..194 1..194 1006 96.9 Plus

LD34406.hyp Sequence

Translation from 76 to 660

> LD34406.hyp
MTGIMDSVEMPKLPENQKTFAGIPEAVFLEEIDTFMSQPENENCEKVLQR
LDEQHGKYRFMACNLEARRRKLKSQIPDLERSLEMVNVLRKEDEERETQF
LLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEALLNQNITSAVGNL
KSVEHDQDFLRDQITTTEVNMARVYNWGVKKRQAATKTTATTPS*

LD34406.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
mgr-PA 194 CG6719-PA 1..194 1..194 993 100 Plus
CG15676-PB 182 CG15676-PB 1..181 1..180 209 28.6 Plus
CG15676-PA 182 CG15676-PA 1..181 1..180 209 28.6 Plus