Clone LD34429 Report

Search the DGRC for LD34429

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:344
Well:29
Vector:pOT2
Associated Gene/TranscriptKrn-RA
Protein status:LD34429.pep: gold
Preliminary Size:1409
Sequenced Size:1340

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32179 2001-09-19 Blastp of sequenced clone
Krn 2008-04-29 Release 5.5 accounting
Krn 2008-08-15 Release 5.9 accounting
CG32177 2008-08-15 Release 5.9 accounting
Krn 2008-12-18 5.12 accounting
CG32177 2008-12-18 5.12 accounting

Clone Sequence Records

LD34429.complete Sequence

1340 bp (1340 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060409

> LD34429.complete
ATTTGTTTTTTTCGCTTCGCTCGCGAAGTGAGCCCAGTTTTAAATTATTT
AAATTGCGTATAGTGAAGCCACTTGAAAGCGAAACGCCTACTGTCGCAGT
TCTGCCAAAAAACCAACAGTATTAGCTGTGTGCGTGTTTGGCAACAACAA
GTCAACAAAATTCGAACAAAATCAATAAAACGGAAACGTGAGAGAGCGCT
GCGCAAAAGAGAAAAGCGAACGCAATCGCAATCGACCAACGCATAGAAGA
AAACAAGCCGCCTGCCAGCCAAAGCCAAGAATTCCACATTACAAAACACC
TTAAACTGCATTGCCACATTCCCAAGTAAGCTGCCATGAGTTAAGATCAA
GATGCGAGCCCAGGATCTGCTGCTGCTTGCCACCGCTTTAATCGGCGCTT
ACCTACCGCTCACCGCCGCCTGTTCCTCGCGTGCCATCGCTAAGCCGCGG
CCAACAGCTGCACCGATCCTGCCGCCGGATAATGTGGAAATATCCACAAC
GCCGAGACCGAATGTCACCTTCCCGATCTTCGCCTGTCCACCGACCTATG
TCGCCTGGTATTGCCTGAACGATGGCACCTGCTTTACGGTGAAGATCCAC
AATGAAATCCTATACAACTGCGAATGTGCGCTGGGATTTATGGGTCCGAG
GTGCGAGTACAAGGAGATTGATGGCTCGTACCTGCCAACCAGGAACCGTG
TGATGCTAGAGAAGGCCAGCATTGTTAGCGGAGCAACGCTGGCCCTTCTG
TTTATGGCCATGTGCTGTGTGGTTTTGTATCTGCGACACGAGAAGCTGCA
AAAACAAAAGCTGCACGACAGCACCACAACCACAACGACCGACGGTGGCT
GTCAGAACGAGGGCATGGACGAGGTGGATGGCTTGCGACCCTTACGTCCA
GTGAGACGTCCCTTTGGACCCTGCCGCATCCTATCGCTGGAGGAGGCCCA
CCTTCAAGCGAAAGCCTCCAATCGCCCCAGGCATTGCAACGAACTTTTGC
GCTAACTAATTAGCCTGGCTGCTCATTTGTTTTTAAATGTCTAACATGTC
CAACTGTTTATTTTAACTGCTAAACGAAACTATTATTTTTGCCATCTGAT
TGAGATGGCGAATGCCGTAGTTCTAAGTGCCTACTGACGTGCCTATAACA
CATTTAGATCAAGTATTAACGAACGAAAACTGATTGCTCAGAGAGAGATA
AAAATAAATCTAGATATAATTCAATGCAATTTTGGCAGCTAGCCGCCCAT
TTATTTATTATACACCTAATTTTATTAAAAAAAAAAACGCGTGAACTAAT
ATCGTCAATAAAAGCGAGAACTAAAAAAAAAAAAAAAAAA

LD34429.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Krn-RA 1348 Krn-RA 29..1348 1..1320 6600 100 Plus
CG32177-RA 2093 CG32177-RA 29..285 1..257 1285 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17639157..17640223 1322..256 5335 100 Minus
chr3L 24539361 chr3L 17643587..17643843 257..1 1285 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17649559..17650628 1325..256 5350 100 Minus
3L 28110227 3L 17653992..17654248 257..1 1285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17642659..17643728 1325..256 5350 100 Minus
3L 28103327 3L 17647092..17647348 257..1 1285 100 Minus
Blast to na_te.dros performed 2019-03-15 16:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
NOF 4347 NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). 491..634 180..33 118 55.4 Minus

LD34429.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:05:00 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17639157..17640221 258..1322 98 <- Minus
chr3L 17643587..17643843 1..257 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:25 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 1..654 352..1005 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:51 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 1..654 352..1005 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:51:38 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 1..654 352..1005 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:17 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 1..654 352..1005 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:25:45 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 1..654 352..1005 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:29 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 29..1348 1..1320 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:51 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 29..1348 1..1320 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:38 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 33..1354 1..1322 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:17 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 29..1348 1..1320 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:25:45 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
Krn-RA 33..1354 1..1322 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:05:00 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17649562..17650626 258..1322 100 <- Minus
3L 17653992..17654248 1..257 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:05:00 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17649562..17650626 258..1322 100 <- Minus
3L 17653992..17654248 1..257 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:05:00 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17649562..17650626 258..1322 100 <- Minus
3L 17653992..17654248 1..257 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:38 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17647092..17647348 1..257 100   Minus
arm_3L 17642662..17643726 258..1322 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:49 Download gff for LD34429.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17642662..17643726 258..1322 100 <- Minus
3L 17647092..17647348 1..257 100   Minus

LD34429.hyp Sequence

Translation from 351 to 1004

> LD34429.hyp
MRAQDLLLLATALIGAYLPLTAACSSRAIAKPRPTAAPILPPDNVEISTT
PRPNVTFPIFACPPTYVAWYCLNDGTCFTVKIHNEILYNCECALGFMGPR
CEYKEIDGSYLPTRNRVMLEKASIVSGATLALLFMAMCCVVLYLRHEKLQ
KQKLHDSTTTTTTDGGCQNEGMDEVDGLRPLRPVRRPFGPCRILSLEEAH
LQAKASNRPRHCNELLR*

LD34429.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
Krn-PA 217 CG32179-PA 1..217 1..217 1162 100 Plus
spi-PF 234 CG10334-PF 11..176 8..156 404 50.6 Plus
spi-PG 234 CG10334-PG 11..176 8..156 404 50.6 Plus
spi-PA 234 CG10334-PA 11..176 8..156 404 50.6 Plus
spi-PB 234 CG10334-PB 11..176 8..156 404 50.6 Plus

LD34429.pep Sequence

Translation from 351 to 1004

> LD34429.pep
MRAQDLLLLATALIGAYLPLTAACSSRAIAKPRPTAAPILPPDNVEISTT
PRPNVTFPIFACPPTYVAWYCLNDGTCFTVKIHNEILYNCECALGFMGPR
CEYKEIDGSYLPTRNRVMLEKASIVSGATLALLFMAMCCVVLYLRHEKLQ
KQKLHDSTTTTTTDGGCQNEGMDEVDGLRPLRPVRRPFGPCRILSLEEAH
LQAKASNRPRHCNELLR*

LD34429.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23898-PA 209 GF23898-PA 1..209 1..213 875 80.6 Plus
Dana\GF15623-PA 225 GF15623-PA 1..164 7..153 381 50 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15794-PA 217 GG15794-PA 1..217 1..217 1115 96.3 Plus
Dere\GG21620-PA 230 GG21620-PA 7..169 8..153 359 49.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15347-PA 227 GH15347-PA 30..227 23..211 721 72.7 Plus
Dgri\GH13498-PA 245 GH13498-PA 5..174 6..156 391 50.3 Plus
Dgri\GH13960-PA 187 GH13960-PA 11..116 51..156 361 61.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
Krn-PA 217 CG32179-PA 1..217 1..217 1162 100 Plus
spi-PF 234 CG10334-PF 11..176 8..156 404 50.6 Plus
spi-PG 234 CG10334-PG 11..176 8..156 404 50.6 Plus
spi-PA 234 CG10334-PA 11..176 8..156 404 50.6 Plus
spi-PB 234 CG10334-PB 11..176 8..156 404 50.6 Plus
spi-PE 234 CG10334-PE 11..176 8..156 404 50.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12950-PA 216 GI12950-PA 1..216 1..211 772 70.5 Plus
Dmoj\GI17249-PA 231 GI17249-PA 18..163 20..148 346 52.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25227-PA 231 GL25227-PA 1..231 1..213 810 72.5 Plus
Dper\GL26227-PA 241 GL26227-PA 18..203 9..179 402 45.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16736-PA 231 GA16736-PA 1..231 1..213 811 72.5 Plus
Dpse\GA28085-PA 230 GA28085-PA 7..192 9..179 402 45.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24318-PA 217 GM24318-PA 1..217 1..217 1137 98.2 Plus
Dsec\GM16998-PA 230 GM16998-PA 7..172 8..156 355 48.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12388-PA 217 GD12388-PA 1..217 1..217 1137 98.2 Plus
Dsim\GD21745-PA 230 GD21745-PA 7..172 8..156 359 49.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13094-PA 215 GJ13094-PA 5..215 7..211 769 72 Plus
Dvir\GJ18009-PA 233 GJ18009-PA 18..188 20..174 381 47.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12333-PA 236 GK12333-PA 26..236 18..211 743 73.9 Plus
Dwil\GK15227-PA 252 GK15227-PA 25..184 20..159 332 48.1 Plus
Dwil\GK18382-PA 325 GK18382-PA 204..263 54..113 143 40 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22131-PA 217 GE22131-PA 1..217 1..217 1071 95.9 Plus
Dyak\GE12640-PA 230 GE12640-PA 7..189 8..168 369 46.4 Plus