Clone LD34464 Report

Search the DGRC for LD34464

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:344
Well:64
Vector:pOT2
Associated Gene/Transcriptgus-RI
Protein status:LD34464.pep: gold
Preliminary Size:1993
Sequenced Size:1790

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2944 2001-01-01 Release 2 assignment
CG2944 2002-06-06 Blastp of sequenced clone
CG2944 2003-01-01 Sim4 clustering to Release 3
gus 2008-04-29 Release 5.5 accounting
gus 2008-08-15 Release 5.9 accounting
gus 2008-12-18 5.12 accounting

Clone Sequence Records

LD34464.complete Sequence

1790 bp (1790 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119609

> LD34464.complete
CTACTTATATTGTGATCGGACAACCCGTGTGTTATCTTAAATAACAAATT
TTTTATTTCGTTGAAAATAGTTGTTTGTTTCGTTTATATTTTAAATACTT
TCTACATATTTCTGTGCATAATGAACATAACGATTTCACAACTAAGCAAG
AAAAGAAATTAACTTCACTCGGTGACGCCATTTTGTCCAATTTTTATATA
CTGCTTTATAAATGGAATTTGGTAAAAAAAGGTATAAGGGTGGTCGGACA
CCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCATCTAT
ATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAGGGAGT
TTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAAGATCC
AGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGAGTCAA
AACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAATACCAA
GAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATATTACTT
GATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGGAACTC
CGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTTGACAT
TTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAAAAGTC
GGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACAAGGCA
AAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACCTTTAC
ATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTTGGGGC
TGGGACTTAGGAAGAAATAAATTATACCATGACTCAAAAAACTGCGCTGG
AGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGTTCCAG
ATAAGTTCTTAGTAGCGTTAGATATGGACGAAGGAACACTAAGCTTCATT
GTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAGGGAAAAA
ACTATATCCAATTGTTTCGGCGGTCTGGGGACACTGTGAAATAACAATGC
GTTACATTGGTGGATTAGATCCCGAACCCTTGCCCCTAATGGATCTTTGC
CGAAGAACAATTCGTCAAAAAATTGGTCGCACAAACTTGGAGGAGCACAT
TCAACAGCTTCAACTTCCTTTATCAATGAAAACATATTTATTGTATAAAA
ACCGTAGATAATAGTTTTGTTAAGTAGATGGAGGAGCAATTTCAATTTTT
GCTGCATGTGATGAAAGCAGCAAATACTAATTGTGTTAGATTATAATAGT
ATTAGATCAATGTTTGTCTGTCCTCCAACAGGAAAATCATAGGTATACAA
TTCGTAATAATACTTTACTTAAGCTATAAAGATTGATTGTATATTAAGAA
GCATTCAAATAATAGTATGTACACGGAATGACATCTCATCTTGCAATAAA
TTGGAGAATCGAGTTTCTTCATGTAACATTATTTAAAAACTATACTCACT
TCGTGTTATATAAAAAGCATATTTGTATAAATATTAAAACTTAAAAAGCG
CAGTTTTAATTAAATGTATGTATGTATAAATAATTCTAACAATATTTAAC
ATGAAAAGCTCTGAAAGTAATTGGTTTACTTTTTATAAATATATTTCGGG
AGAAAAACTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD34464.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
gus-RF 2036 gus-RF 526..2011 229..1714 7430 100 Plus
gus.j 2058 gus.j 341..1823 232..1714 7415 100 Plus
gus-RC 1883 gus-RC 401..1883 232..1714 7415 100 Plus
gus-RF 2036 gus-RF 110..343 1..234 1170 100 Plus
gus.j 2058 gus.j 38..271 1..234 1170 100 Plus
gus-RC 1883 gus-RC 98..331 1..234 1170 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1008241..1009133 1121..229 4435 99.8 Minus
chr2R 21145070 chr2R 1004702..1005291 1711..1122 2935 99.8 Minus
chr2R 21145070 chr2R 1009457..1009690 234..1 1170 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5120763..5121655 1121..229 4465 100 Minus
2R 25286936 2R 5117210..5117802 1714..1122 2965 100 Minus
2R 25286936 2R 5121980..5122213 234..1 1170 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5121962..5122854 1121..229 4465 100 Minus
2R 25260384 2R 5118409..5119001 1714..1122 2965 100 Minus
2R 25260384 2R 5123179..5123412 234..1 1170 100 Minus
Blast to na_te.dros performed 2019-03-15 13:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 278..444 1394..1556 138 59.2 Plus
invader3 5484 invader3 INVADER3 5484bp 5052..5148 1577..1670 135 64.3 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 7526..7669 1394..1533 131 61 Plus

LD34464.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:44:07 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1004702..1005291 1122..1711 99 <- Minus
chr2R 1008241..1009130 232..1121 99 <- Minus
chr2R 1009460..1009690 1..231 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:32 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RA 1..1050 212..1261 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:10:47 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RK 1..840 422..1261 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:42 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RA 1..1050 212..1261 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:39:22 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RK 1..840 422..1261 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:00:18 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RF 38..268 1..231 100 -> Plus
gus-RF 457..1936 232..1711 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:32 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RF 38..268 1..231 100 -> Plus
gus-RF 457..1936 232..1711 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:10:47 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RG 35..1745 1..1711 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:42 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RF 38..268 1..231 100 -> Plus
gus-RF 457..1936 232..1711 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:39:22 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RG 35..1745 1..1711 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:07 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5117213..5117802 1122..1711 100 <- Minus
2R 5120763..5121652 232..1121 100 <- Minus
2R 5121983..5122213 1..231 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:07 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5117213..5117802 1122..1711 100 <- Minus
2R 5120763..5121652 232..1121 100 <- Minus
2R 5121983..5122213 1..231 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:07 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5117213..5117802 1122..1711 100 <- Minus
2R 5120763..5121652 232..1121 100 <- Minus
2R 5121983..5122213 1..231 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:10:47 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1004718..1005307 1122..1711 100 <- Minus
arm_2R 1008268..1009157 232..1121 100 <- Minus
arm_2R 1009488..1009718 1..231 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:26 Download gff for LD34464.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5118412..5119001 1122..1711 100 <- Minus
2R 5121962..5122851 232..1121 100 <- Minus
2R 5123182..5123412 1..231 100   Minus

LD34464.pep Sequence

Translation from 211 to 1260

> LD34464.pep
MEFGKKRYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFERL
RLSYKIAIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQ
ADFVKPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRH
PVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVG
YQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFL
VALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIG
GLDPEPLPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNRR*

LD34464.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12960-PA 255 GF12960-PA 81..250 126..300 388 45.7 Plus
Dana\GF15713-PA 304 GF15713-PA 74..279 127..343 228 29.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23140-PA 349 GG23140-PA 1..349 1..349 1855 99.1 Plus
Dere\GG22511-PA 255 GG22511-PA 81..250 126..300 387 45.7 Plus
Dere\GG25044-PA 301 GG25044-PA 56..271 117..343 240 28.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13013-PA 349 GH13013-PA 1..349 1..349 1757 92.3 Plus
Dgri\GH21169-PA 252 GH21169-PA 78..247 126..300 395 46.9 Plus
Dgri\GH11484-PA 283 GH11484-PA 36..256 112..343 230 29.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
gus-PM 279 CG2944-PM 1..279 71..349 1486 100 Plus
gus-PL 279 CG2944-PL 1..279 71..349 1486 100 Plus
gus-PK 279 CG2944-PK 1..279 71..349 1486 100 Plus
gus-PJ 279 CG2944-PJ 1..279 71..349 1486 100 Plus
gus-PI 279 CG2944-PI 1..279 71..349 1486 100 Plus
gus-PH 279 CG2944-PH 1..279 71..349 1486 100 Plus
gus-PG 279 CG2944-PG 1..279 71..349 1486 100 Plus
Fsn-PA 255 CG4643-PA 81..250 126..300 394 45.7 Plus
Fsn-PB 255 CG4643-PB 81..250 126..300 394 45.7 Plus
SP555-PD 293 CG14041-PD 19..271 56..343 238 28.2 Plus
SP555-PB 293 CG14041-PB 19..271 56..343 238 28.2 Plus
SP555-PC 301 CG14041-PC 19..271 56..343 238 28.2 Plus
SP555-PA 301 CG14041-PA 19..271 56..343 238 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18267-PA 349 GI18267-PA 1..349 1..349 1761 92.6 Plus
Dmoj\GI18764-PA 252 GI18764-PA 78..247 126..300 395 46.3 Plus
Dmoj\GI16979-PA 316 GI16979-PA 85..290 127..343 208 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15433-PA 349 GL15433-PA 1..349 1..349 1808 96 Plus
Dper\GL10506-PA 255 GL10506-PA 81..250 126..300 393 46.9 Plus
Dper\GL26545-PA 292 GL26545-PA 51..270 119..343 227 28.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23998-PA 349 GA23998-PA 1..349 1..349 1808 96 Plus
Dpse\GA18323-PA 255 GA18323-PA 81..250 126..300 393 46.9 Plus
Dpse\GA12721-PA 292 GA12721-PA 51..270 119..343 227 28.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26734-PA 349 GM26734-PA 1..349 1..349 1865 100 Plus
Dsec\GM20297-PA 255 GM20297-PA 64..250 110..300 389 43.8 Plus
Dsec\GM18519-PA 301 GM18519-PA 56..271 117..343 238 28.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16681-PA 349 GD16681-PA 1..349 1..349 1865 100 Plus
Dsim\GD25778-PA 245 GD25778-PA 81..240 126..300 331 41.7 Plus
Dsim\GD12021-PA 301 GD12021-PA 56..271 117..343 238 28.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21895-PA 349 GJ21895-PA 1..349 1..349 1761 92.3 Plus
Dvir\GJ21788-PA 252 GJ21788-PA 78..247 126..300 393 46.3 Plus
Dvir\GJ17226-PA 299 GJ17226-PA 53..272 113..343 226 30.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14868-PA 349 GK14868-PA 1..349 1..349 1785 94.6 Plus
Dwil\GK22006-PA 255 GK22006-PA 81..250 126..300 389 46.3 Plus
Dwil\GK24858-PA 301 GK24858-PA 64..276 117..343 218 30 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\gus-PA 349 GE11348-PA 1..349 1..349 1851 98.9 Plus
Dyak\GE13381-PA 255 GE13381-PA 81..250 126..300 380 45.1 Plus
Dyak\GE11313-PA 303 GE11313-PA 58..273 117..343 235 28.3 Plus

LD34464.hyp Sequence

Translation from 211 to 1260

> LD34464.hyp
MEFGKKRYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFERL
RLSYKIAIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQ
ADFVKPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRH
PVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVG
YQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFL
VALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIG
GLDPEPLPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNRR*

LD34464.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
gus-PM 279 CG2944-PM 1..279 71..349 1486 100 Plus
gus-PL 279 CG2944-PL 1..279 71..349 1486 100 Plus
gus-PK 279 CG2944-PK 1..279 71..349 1486 100 Plus
gus-PJ 279 CG2944-PJ 1..279 71..349 1486 100 Plus
gus-PI 279 CG2944-PI 1..279 71..349 1486 100 Plus