BDGP Sequence Production Resources |
Search the DGRC for LD34489
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 344 |
Well: | 89 |
Vector: | pOT2 |
Associated Gene/Transcript | Atf-2-RA |
Protein status: | LD34489.pep: wuzgold |
Preliminary Size: | 3439 |
Sequenced Size: | 3313 |
Gene | Date | Evidence |
---|---|---|
CG3749 | 2001-01-01 | Release 2 assignment |
CG12850 | 2001-01-01 | Release 2 assignment |
CG30420 | 2001-09-19 | Blastp of sequenced clone |
CG30420 | 2003-01-01 | Sim4 clustering to Release 3 |
Atf-2 | 2008-04-29 | Release 5.5 accounting |
Atf-2 | 2008-08-15 | Release 5.9 accounting |
Atf-2 | 2008-12-18 | 5.12 accounting |
3313 bp (3313 high quality bases) assembled on 2005-08-22
GenBank Submission: AY058645
> LD34489.complete TTCAATAACACATCCATACATCGATAACAATTTTATTTTTTGTTTTGCTA ATGTGATTTACAAAATAGTTGTTTTAATTGAGAATTGTCGGCAGATTATG GAGTTTGATTTGTAAATAGCATGATTTTGATGTAACTTCTGACATGGACA CCGCCGGAGACATGGATCACCTGGCCAGTGTGTCCTTCGGCGACTTTGAG ACAAAATCCCCAGAGGGCGACGTATCCTGCTATCAGAACTTTCGGGCACA GACGGAACATGTTTCGCTAGACATTTCTCTCGGGCAGAAGTCAGACACTC TATTTGCCGCCGACCAAACGCCCACGCCTACGCGACTCATCAAGAACTGC GACGAGGTGGGTCTCTTCGAGGACCTGCAGCACGTAAATCCATTTGACAT TGGATTCCAGCAAGCAGCGGAGCGAAATGTCAGCGGCACTCCGAGTCGCC CAGAGGCTCGACCCAATGACGGTGAGTCCCTGCACACGCCCCAGGTGTAT CCCGTCGAGGCCCCCACCGTGGTATCAGTTCCGTCTGAAAATCAGGTCCC ACAAAGTGTCAGCTGCGGCGATATGGATGTGGACCAGCTTCTGGCCACGA CAGTTACCTCGCCTTCCAAAGCCAGTCAAGATGGTCCGCCGCCGCTGCAG TTGATCCAGCCCCAGGTCCTAACATGGGTGCTGCCTGCGCAGTCAGTTCC CATTTCCATCGCTACAGTTGATTGTAACAGAAACAGGGTGAAGCCGACTG GTGCCATTCATCCCTTCATACTGCCGAAACCCACTGCGAAAGAATTAAAC AAGACCAGTAAAAGACCCGAGCCTATTTTGGTCAGTTGCAACCCACCTAA TAACGAGCCCAGTAGCGCCAGTCTGACGCCCACCTCACAGCTGCCCATCA AGGAGCGATTGAAGGCCATTATCCACAGCAATAATAACAGACGAAGTTTC TCCACACCGCCCAAGGCTGCGAAAGCAAAGGATCGCAGTCGGGACGAGGA TTGTATGGAGCGACGAAGAGCAGCAGCCTCTCGTTACCGTAACAAGATGC GAAACGAGCATAAGGACCTCATCAAACAGAACGCCCAGCTGCAGCAGGAG AATCAAGAACTGCACGAAAGAATTTCCAGATTAGAAAAGGAACTGCAGCA GCACAGGAGTCACAGCAGCTTAGCTGGCGGATTGCGCCGCCGACCCATTC AGCCGCCTGTGATGGATCCGCAGAGTGAGCAAGAGTATGCTTTTCTGGCC CAGATGATGGAGCAGTATGCCCGCCGTCGGCTGCAGCAGCAGTTCGACCA ACAGCTGCACGAAATCAACCTGAAGATGGATCGTCAGCGGCAGCTCTTGG AGCAGGAGCGGTACCGCCAGCGGCAGCAGGAGCTCCAGGTACAGCGCGAG GCGGAGGAGGACTACGAGTCCAACGGAAACAACCTGAACCAGCAGTACGA CCAGTACGACAACGCGGAGGCAGAGGCCAGCTACGGCAGTCCGATGGAGG CAGTCTCTGATCTCCAAAGTCCTCCATTGTACCTGCCTCGCCTGCCCAAC CTACCACCCTTGCCCAGCCTTCCGAATCGGCCCAGCCTGGGCAACTCCCC GAACAGGAACAGTGTGCTCCGCGAACGGATTCCCTTTGCTGTAGGTCCCA GCGACGCTCGCTTCTTTGACAACCCGAACGACCCTTCGGGGGAGCTGGAT TCCCGGGCGCTGGAGGACTACGAGGAGTATGCTCCCATTGAGCCCACAAC CGAAGTAGCCACCACCGCCAGTAAGACCAAGATCGATACGCCAGTACCGG CTCCCGTGCCCGTTGAGCCGCCCAAACTGCTTGACGCCGCCAACACCAAC TTCCACCGCATCAATCCCCAGTCCGCCGCCGCCGCAGCCGTGGCGGGAGT GAATATTCCCCAGAGCAAAGAACAACCACCCCATGAACTTAACGCACTGA TCAACAAGCTGCAAAAGCAAAGCAAAGCGCCCTCTCATTTGACGCTGGTC AACGGAGGTGATTCCAGTCAGGAGCAGATTGTGCTGCGCCAGCACCTGGG CATGAACAGCGAGATGGGGGTGTACATAGTGGCCCTAATAGCGGGGGTTA GTGCAGCGGTGACCGTTGGGCTTCTTGCCCTCGGAGTAACTTGGTTCCAT AATCGACACAAGGCAGCAGCGGACGTGGAATACCCTGCCTACGGCGTTAC CGGGCCGAACAAGGATGTCTCGCCGTCCGGTGACAGAAAGCTGGCCCAGA GCGCCCAAATGTACCACTACCAGCACCAGAAGCAGCAGATCATCGCCATG GAGAACCAGGCCACGGATGGTAGCTGCGGCATGTCGGACGTGGAGAGCGA CGACGACAACGAGGAGGGCGACTACACGGTGTACGAGTGCCCCGGCCTGG CGCCCACTGGTGAGATGGAGGTGAAGAATCCGCTCTTCCTGGACGAGACG CCGGCCACGCCGTCAAACAACCTGTCGTCCCAAACCGCTGGAGCTGCCAA TGCGGCAGCAGCGACCAATAACAACATCACGCAGGCTACCCCCCAGCAGC CGGCCACCCTGAAGAAGGGAACGGTCAAGCCGAACATAAATCTCCTGAAC GCAACGGGCACTGCAGCAGCAGCAGCTTCAGCCGCATCAGCAGCCTCAGC GACCGGAGGGGAGGAGCCCAAGCAGAAGCGCAAGAGCAAGAAGTAAGGCG ACTGGACATTGTTTTCCCTCTTGGGGCAATTGGTAAAGTTTGACTGATCC ATTGTCAGCCAACAGACACATCCTCTTACACAGATTCAAAAACAGACCAG ACTAGGTGCTGGGAGCCATCTACGCATATTACAGATACTTCAGGGAATTT AATTCCGGGAGCCAAGCAAACCACACACACGACACTACACACATCTGTCA CTATTCTTCCTTCCCTATATATGCATAAGTCCGGTAATGTAATGTAATTG CTATGCAGTAAGAATAGCTCCAGTAAACCGTGAGTACCCCAAACCCGAAC CCAATCCCAATCCCAATCTCATCCGCCCAGTTTCCACCCGCTGTCAGTTG CACAACGCTGATGATTCTATTACGATGCGGCAAGCGTAATCCTGTGTTGC ATGGCAGCGTGGGTTATTGTATATCAACTTTTTTTGTCACTGCGAATCGT TGGATTTACGGTCTGGAGAAGCTGAGGAGCTTAGGAGGAGGGACAACCAA CCGAAGCAAACTAACATATTATATTATTATAAATATATGTATACATACAC ACATATTTATATATAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 20756026..20757205 | 1..1180 | 5825 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 20765122..20766241 | 2143..3268 | 5490 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 20764097..20765063 | 1179..2145 | 4820 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 24870067..24871246 | 1..1180 | 5900 | 100 | Plus |
2R | 25286936 | 2R | 24879163..24880289 | 2143..3269 | 5635 | 100 | Plus |
2R | 25286936 | 2R | 24878138..24879104 | 1179..2145 | 4835 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 24871266..24872445 | 1..1180 | 5900 | 100 | Plus |
2R | 25260384 | 2R | 24880362..24881488 | 2143..3269 | 5635 | 100 | Plus |
2R | 25260384 | 2R | 24879337..24880303 | 1179..2145 | 4835 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 1046..1119 | 2256..2331 | 130 | 70.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 20756026..20757204 | 1..1179 | 99 | -> | Plus |
chr2R | 20764098..20765061 | 1180..2143 | 99 | -> | Plus |
chr2R | 20765123..20766198 | 2144..3225 | 96 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atf-2-RA | 1..2553 | 144..2696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atf-2-RA | 1..2553 | 144..2696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG44247-RA | 94..1611 | 1179..2696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atf-2-RA | 1..2553 | 144..2696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG44247-RA | 94..1611 | 1179..2696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atf-2-RA | 1..3268 | 1..3268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atf-2-RA | 1..3268 | 1..3268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG44247-RA | 607..2696 | 1179..3268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atf-2-RA | 1..3268 | 1..3268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG44247-RA | 607..2696 | 1179..3268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24870067..24871245 | 1..1179 | 100 | -> | Plus |
2R | 24878139..24879102 | 1180..2143 | 100 | -> | Plus |
2R | 24879164..24880288 | 2144..3268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24870067..24871245 | 1..1179 | 100 | -> | Plus |
2R | 24878139..24879102 | 1180..2143 | 100 | -> | Plus |
2R | 24879164..24880288 | 2144..3268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24870067..24871245 | 1..1179 | 100 | -> | Plus |
2R | 24878139..24879102 | 1180..2143 | 100 | -> | Plus |
2R | 24879164..24880288 | 2144..3268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 20757590..20758768 | 1..1179 | 100 | -> | Plus |
arm_2R | 20765662..20766625 | 1180..2143 | 100 | -> | Plus |
arm_2R | 20766687..20767811 | 2144..3268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24871284..24872462 | 1..1179 | 100 | -> | Plus |
2R | 24879356..24880319 | 1180..2143 | 100 | -> | Plus |
2R | 24880381..24881505 | 2144..3268 | 100 | Plus |
Translation from 143 to 2695
> LD34489.hyp MDTAGDMDHLASVSFGDFETKSPEGDVSCYQNFRAQTEHVSLDISLGQKS DTLFAADQTPTPTRLIKNCDEVGLFEDLQHVNPFDIGFQQAAERNVSGTP SRPEARPNDGESLHTPQVYPVEAPTVVSVPSENQVPQSVSCGDMDVDQLL ATTVTSPSKASQDGPPPLQLIQPQVLTWVLPAQSVPISIATVDCNRNRVK PTGAIHPFILPKPTAKELNKTSKRPEPILVSCNPPNNEPSSASLTPTSQL PIKERLKAIIHSNNNRRSFSTPPKAAKAKDRSRDEDCMERRRAAASRYRN KMRNEHKDLIKQNAQLQQENQELHERISRLEKELQQHRSHSSLAGGLRRR PIQPPVMDPQSEQEYAFLAQMMEQYARRRLQQQFDQQLHEINLKMDRQRQ LLEQERYRQRQQELQVQREAEEDYESNGNNLNQQYDQYDNAEAEASYGSP MEAVSDLQSPPLYLPRLPNLPPLPSLPNRPSLGNSPNRNSVLRERIPFAV GPSDARFFDNPNDPSGELDSRALEDYEEYAPIEPTTEVATTASKTKIDTP VPAPVPVEPPKLLDAANTNFHRINPQSAAAAAVAGVNIPQSKEQPPHELN ALINKLQKQSKAPSHLTLVNGGDSSQEQIVLRQHLGMNSEMGVYIVALIA GVSAAVTVGLLALGVTWFHNRHKAAADVEYPAYGVTGPNKDVSPSGDRKL AQSAQMYHYQHQKQQIIAMENQATDGSCGMSDVESDDDNEEGDYTVYECP GLAPTGEMEVKNPLFLDETPATPSNNLSSQTAGAANAAAATNNNITQATP QQPATLKKGTVKPNINLLNATGTAAAAASAASAASATGGEEPKQKRKSKK *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG44247-PB | 536 | CG44247-PB | 28..536 | 342..850 | 2607 | 99.4 | Plus |
CG44247-PA | 536 | CG44247-PA | 28..536 | 342..850 | 2607 | 99.4 | Plus |
Atf-2-PA | 381 | CG44246-PA | 1..355 | 1..355 | 1797 | 97.7 | Plus |
Translation from 143 to 2695
> LD34489.pep MDTAGDMDHLASVSFGDFETKSPEGDVSCYQNFRAQTEHVSLDISLGQKS DTLFAADQTPTPTRLIKNCDEVGLFEDLQHVNPFDIGFQQAAERNVSGTP SRPEARPNDGESLHTPQVYPVEAPTVVSVPSENQVPQSVSCGDMDVDQLL ATTVTSPSKASQDGPPPLQLIQPQVLTWVLPAQSVPISIATVDCNRNRVK PTGAIHPFILPKPTAKELNKTSKRPEPILVSCNPPNNEPSSASLTPTSQL PIKERLKAIIHSNNNRRSFSTPPKAAKAKDRSRDEDCMERRRAAASRYRN KMRNEHKDLIKQNAQLQQENQELHERISRLEKELQQHRSHSSLAGGLRRR PIQPPVMDPQSEQEYAFLAQMMEQYARRRLQQQFDQQLHEINLKMDRQRQ LLEQERYRQRQQELQVQREAEEDYESNGNNLNQQYDQYDNAEAEASYGSP MEAVSDLQSPPLYLPRLPNLPPLPSLPNRPSLGNSPNRNSVLRERIPFAV GPSDARFFDNPNDPSGELDSRALEDYEEYAPIEPTTEVATTASKTKIDTP VPAPVPVEPPKLLDAANTNFHRINPQSAAAAAVAGVNIPQSKEQPPHELN ALINKLQKQSKAPSHLTLVNGGDSSQEQIVLRQHLGMNSEMGVYIVALIA GVSAAVTVGLLALGVTWFHNRHKAAADVEYPAYGVTGPNKDVSPSGDRKL AQSAQMYHYQHQKQQIIAMENQATDGSCGMSDVESDDDNEEGDYTVYECP GLAPTGEMEVKNPLFLDETPATPSNNLSSQTAGAANAAAATNNNITQATP QQPATLKKGTVKPNINLLNATGTAAAAASAASAASATGGEEPKQKRKSKK *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13346-PA | 536 | GF13346-PA | 24..535 | 338..850 | 1921 | 84.2 | Plus |
Dana\GF13345-PA | 370 | GF13345-PA | 1..339 | 1..345 | 1045 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23014-PA | 542 | GG23014-PA | 28..542 | 342..850 | 2595 | 95.7 | Plus |
Dere\GG23012-PA | 381 | GG23012-PA | 1..345 | 1..345 | 1619 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20365-PA | 531 | GH20365-PA | 30..531 | 346..850 | 1490 | 66.5 | Plus |
Dgri\GH20364-PA | 393 | GH20364-PA | 1..345 | 1..335 | 772 | 53.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG44247-PB | 536 | CG44247-PB | 28..536 | 342..850 | 2607 | 99.4 | Plus |
CG44247-PA | 536 | CG44247-PA | 28..536 | 342..850 | 2607 | 99.4 | Plus |
Atf-2-PA | 381 | CG44246-PA | 1..355 | 1..355 | 1797 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20038-PA | 510 | GI20038-PA | 26..482 | 342..818 | 1381 | 68.8 | Plus |
Dmoj\GI20037-PA | 382 | GI20037-PA | 1..353 | 1..346 | 747 | 53.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11194-PA | 523 | GL11194-PA | 28..523 | 342..850 | 1996 | 81.2 | Plus |
Dper\GL17691-PA | 379 | GL17691-PA | 1..343 | 1..345 | 955 | 62.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24636-PA | 527 | GA24636-PA | 28..527 | 342..850 | 1997 | 81.5 | Plus |
Dpse\GA24876-PA | 379 | GA24876-PA | 1..343 | 1..345 | 947 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11907-PA | 381 | GM11907-PA | 1..345 | 1..345 | 1671 | 93.9 | Plus |
Dsec\GM11686-PA | 299 | GM11686-PA | 1..279 | 1..279 | 1350 | 91 | Plus |
Dsec\GM11908-PA | 274 | GM11908-PA | 28..268 | 342..582 | 1007 | 96.3 | Plus |
Dsec\GM11909-PA | 199 | GM11909-PA | 1..199 | 641..850 | 948 | 92.9 | Plus |
Dsec\GM18751-PA | 185 | GM18751-PA | 28..162 | 342..476 | 673 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11906-PA | 536 | GD11906-PA | 28..536 | 342..850 | 2646 | 98 | Plus |
Dsim\GD11905-PA | 381 | GD11905-PA | 1..345 | 1..345 | 1682 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21282-PA | 531 | GJ21282-PA | 26..531 | 342..850 | 1377 | 66.7 | Plus |
Dvir\GJ21281-PA | 392 | GJ21281-PA | 1..366 | 1..355 | 704 | 50.1 | Plus |