Clone LD34489 Report

Search the DGRC for LD34489

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:344
Well:89
Vector:pOT2
Associated Gene/TranscriptAtf-2-RA
Protein status:LD34489.pep: wuzgold
Preliminary Size:3439
Sequenced Size:3313

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3749 2001-01-01 Release 2 assignment
CG12850 2001-01-01 Release 2 assignment
CG30420 2001-09-19 Blastp of sequenced clone
CG30420 2003-01-01 Sim4 clustering to Release 3
Atf-2 2008-04-29 Release 5.5 accounting
Atf-2 2008-08-15 Release 5.9 accounting
Atf-2 2008-12-18 5.12 accounting

Clone Sequence Records

LD34489.complete Sequence

3313 bp (3313 high quality bases) assembled on 2005-08-22

GenBank Submission: AY058645

> LD34489.complete
TTCAATAACACATCCATACATCGATAACAATTTTATTTTTTGTTTTGCTA
ATGTGATTTACAAAATAGTTGTTTTAATTGAGAATTGTCGGCAGATTATG
GAGTTTGATTTGTAAATAGCATGATTTTGATGTAACTTCTGACATGGACA
CCGCCGGAGACATGGATCACCTGGCCAGTGTGTCCTTCGGCGACTTTGAG
ACAAAATCCCCAGAGGGCGACGTATCCTGCTATCAGAACTTTCGGGCACA
GACGGAACATGTTTCGCTAGACATTTCTCTCGGGCAGAAGTCAGACACTC
TATTTGCCGCCGACCAAACGCCCACGCCTACGCGACTCATCAAGAACTGC
GACGAGGTGGGTCTCTTCGAGGACCTGCAGCACGTAAATCCATTTGACAT
TGGATTCCAGCAAGCAGCGGAGCGAAATGTCAGCGGCACTCCGAGTCGCC
CAGAGGCTCGACCCAATGACGGTGAGTCCCTGCACACGCCCCAGGTGTAT
CCCGTCGAGGCCCCCACCGTGGTATCAGTTCCGTCTGAAAATCAGGTCCC
ACAAAGTGTCAGCTGCGGCGATATGGATGTGGACCAGCTTCTGGCCACGA
CAGTTACCTCGCCTTCCAAAGCCAGTCAAGATGGTCCGCCGCCGCTGCAG
TTGATCCAGCCCCAGGTCCTAACATGGGTGCTGCCTGCGCAGTCAGTTCC
CATTTCCATCGCTACAGTTGATTGTAACAGAAACAGGGTGAAGCCGACTG
GTGCCATTCATCCCTTCATACTGCCGAAACCCACTGCGAAAGAATTAAAC
AAGACCAGTAAAAGACCCGAGCCTATTTTGGTCAGTTGCAACCCACCTAA
TAACGAGCCCAGTAGCGCCAGTCTGACGCCCACCTCACAGCTGCCCATCA
AGGAGCGATTGAAGGCCATTATCCACAGCAATAATAACAGACGAAGTTTC
TCCACACCGCCCAAGGCTGCGAAAGCAAAGGATCGCAGTCGGGACGAGGA
TTGTATGGAGCGACGAAGAGCAGCAGCCTCTCGTTACCGTAACAAGATGC
GAAACGAGCATAAGGACCTCATCAAACAGAACGCCCAGCTGCAGCAGGAG
AATCAAGAACTGCACGAAAGAATTTCCAGATTAGAAAAGGAACTGCAGCA
GCACAGGAGTCACAGCAGCTTAGCTGGCGGATTGCGCCGCCGACCCATTC
AGCCGCCTGTGATGGATCCGCAGAGTGAGCAAGAGTATGCTTTTCTGGCC
CAGATGATGGAGCAGTATGCCCGCCGTCGGCTGCAGCAGCAGTTCGACCA
ACAGCTGCACGAAATCAACCTGAAGATGGATCGTCAGCGGCAGCTCTTGG
AGCAGGAGCGGTACCGCCAGCGGCAGCAGGAGCTCCAGGTACAGCGCGAG
GCGGAGGAGGACTACGAGTCCAACGGAAACAACCTGAACCAGCAGTACGA
CCAGTACGACAACGCGGAGGCAGAGGCCAGCTACGGCAGTCCGATGGAGG
CAGTCTCTGATCTCCAAAGTCCTCCATTGTACCTGCCTCGCCTGCCCAAC
CTACCACCCTTGCCCAGCCTTCCGAATCGGCCCAGCCTGGGCAACTCCCC
GAACAGGAACAGTGTGCTCCGCGAACGGATTCCCTTTGCTGTAGGTCCCA
GCGACGCTCGCTTCTTTGACAACCCGAACGACCCTTCGGGGGAGCTGGAT
TCCCGGGCGCTGGAGGACTACGAGGAGTATGCTCCCATTGAGCCCACAAC
CGAAGTAGCCACCACCGCCAGTAAGACCAAGATCGATACGCCAGTACCGG
CTCCCGTGCCCGTTGAGCCGCCCAAACTGCTTGACGCCGCCAACACCAAC
TTCCACCGCATCAATCCCCAGTCCGCCGCCGCCGCAGCCGTGGCGGGAGT
GAATATTCCCCAGAGCAAAGAACAACCACCCCATGAACTTAACGCACTGA
TCAACAAGCTGCAAAAGCAAAGCAAAGCGCCCTCTCATTTGACGCTGGTC
AACGGAGGTGATTCCAGTCAGGAGCAGATTGTGCTGCGCCAGCACCTGGG
CATGAACAGCGAGATGGGGGTGTACATAGTGGCCCTAATAGCGGGGGTTA
GTGCAGCGGTGACCGTTGGGCTTCTTGCCCTCGGAGTAACTTGGTTCCAT
AATCGACACAAGGCAGCAGCGGACGTGGAATACCCTGCCTACGGCGTTAC
CGGGCCGAACAAGGATGTCTCGCCGTCCGGTGACAGAAAGCTGGCCCAGA
GCGCCCAAATGTACCACTACCAGCACCAGAAGCAGCAGATCATCGCCATG
GAGAACCAGGCCACGGATGGTAGCTGCGGCATGTCGGACGTGGAGAGCGA
CGACGACAACGAGGAGGGCGACTACACGGTGTACGAGTGCCCCGGCCTGG
CGCCCACTGGTGAGATGGAGGTGAAGAATCCGCTCTTCCTGGACGAGACG
CCGGCCACGCCGTCAAACAACCTGTCGTCCCAAACCGCTGGAGCTGCCAA
TGCGGCAGCAGCGACCAATAACAACATCACGCAGGCTACCCCCCAGCAGC
CGGCCACCCTGAAGAAGGGAACGGTCAAGCCGAACATAAATCTCCTGAAC
GCAACGGGCACTGCAGCAGCAGCAGCTTCAGCCGCATCAGCAGCCTCAGC
GACCGGAGGGGAGGAGCCCAAGCAGAAGCGCAAGAGCAAGAAGTAAGGCG
ACTGGACATTGTTTTCCCTCTTGGGGCAATTGGTAAAGTTTGACTGATCC
ATTGTCAGCCAACAGACACATCCTCTTACACAGATTCAAAAACAGACCAG
ACTAGGTGCTGGGAGCCATCTACGCATATTACAGATACTTCAGGGAATTT
AATTCCGGGAGCCAAGCAAACCACACACACGACACTACACACATCTGTCA
CTATTCTTCCTTCCCTATATATGCATAAGTCCGGTAATGTAATGTAATTG
CTATGCAGTAAGAATAGCTCCAGTAAACCGTGAGTACCCCAAACCCGAAC
CCAATCCCAATCCCAATCTCATCCGCCCAGTTTCCACCCGCTGTCAGTTG
CACAACGCTGATGATTCTATTACGATGCGGCAAGCGTAATCCTGTGTTGC
ATGGCAGCGTGGGTTATTGTATATCAACTTTTTTTGTCACTGCGAATCGT
TGGATTTACGGTCTGGAGAAGCTGAGGAGCTTAGGAGGAGGGACAACCAA
CCGAAGCAAACTAACATATTATATTATTATAAATATATGTATACATACAC
ACATATTTATATATAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

LD34489.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Atf-2-RA 3274 Atf-2-RA 1..3269 1..3269 16345 100 Plus
Atf-2.b 3867 Atf-2.b 733..2823 1179..3269 10455 100 Plus
Atf-2-RB 2871 Atf-2-RB 733..2823 1179..3269 10455 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20756026..20757205 1..1180 5825 99.6 Plus
chr2R 21145070 chr2R 20765122..20766241 2143..3268 5490 99.4 Plus
chr2R 21145070 chr2R 20764097..20765063 1179..2145 4820 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24870067..24871246 1..1180 5900 100 Plus
2R 25286936 2R 24879163..24880289 2143..3269 5635 100 Plus
2R 25286936 2R 24878138..24879104 1179..2145 4835 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24871266..24872445 1..1180 5900 100 Plus
2R 25260384 2R 24880362..24881488 2143..3269 5635 100 Plus
2R 25260384 2R 24879337..24880303 1179..2145 4835 100 Plus
Blast to na_te.dros performed 2019-03-16 05:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1046..1119 2256..2331 130 70.1 Plus

LD34489.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:24:39 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20756026..20757204 1..1179 99 -> Plus
chr2R 20764098..20765061 1180..2143 99 -> Plus
chr2R 20765123..20766198 2144..3225 96 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:23:26 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 1..2553 144..2696 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:54:31 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 1..2553 144..2696 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:10:02 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 94..1611 1179..2696 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:14 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 1..2553 144..2696 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:04:29 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 94..1611 1179..2696 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:23:26 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 1..3268 1..3268 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:54:31 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 1..3268 1..3268 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:02 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 607..2696 1179..3268 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:15 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 1..3268 1..3268 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:04:29 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 607..2696 1179..3268 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:24:39 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24870067..24871245 1..1179 100 -> Plus
2R 24878139..24879102 1180..2143 100 -> Plus
2R 24879164..24880288 2144..3268 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:24:39 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24870067..24871245 1..1179 100 -> Plus
2R 24878139..24879102 1180..2143 100 -> Plus
2R 24879164..24880288 2144..3268 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:24:39 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24870067..24871245 1..1179 100 -> Plus
2R 24878139..24879102 1180..2143 100 -> Plus
2R 24879164..24880288 2144..3268 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:02 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20757590..20758768 1..1179 100 -> Plus
arm_2R 20765662..20766625 1180..2143 100 -> Plus
arm_2R 20766687..20767811 2144..3268 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:13:49 Download gff for LD34489.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24871284..24872462 1..1179 100 -> Plus
2R 24879356..24880319 1180..2143 100 -> Plus
2R 24880381..24881505 2144..3268 100   Plus

LD34489.hyp Sequence

Translation from 143 to 2695

> LD34489.hyp
MDTAGDMDHLASVSFGDFETKSPEGDVSCYQNFRAQTEHVSLDISLGQKS
DTLFAADQTPTPTRLIKNCDEVGLFEDLQHVNPFDIGFQQAAERNVSGTP
SRPEARPNDGESLHTPQVYPVEAPTVVSVPSENQVPQSVSCGDMDVDQLL
ATTVTSPSKASQDGPPPLQLIQPQVLTWVLPAQSVPISIATVDCNRNRVK
PTGAIHPFILPKPTAKELNKTSKRPEPILVSCNPPNNEPSSASLTPTSQL
PIKERLKAIIHSNNNRRSFSTPPKAAKAKDRSRDEDCMERRRAAASRYRN
KMRNEHKDLIKQNAQLQQENQELHERISRLEKELQQHRSHSSLAGGLRRR
PIQPPVMDPQSEQEYAFLAQMMEQYARRRLQQQFDQQLHEINLKMDRQRQ
LLEQERYRQRQQELQVQREAEEDYESNGNNLNQQYDQYDNAEAEASYGSP
MEAVSDLQSPPLYLPRLPNLPPLPSLPNRPSLGNSPNRNSVLRERIPFAV
GPSDARFFDNPNDPSGELDSRALEDYEEYAPIEPTTEVATTASKTKIDTP
VPAPVPVEPPKLLDAANTNFHRINPQSAAAAAVAGVNIPQSKEQPPHELN
ALINKLQKQSKAPSHLTLVNGGDSSQEQIVLRQHLGMNSEMGVYIVALIA
GVSAAVTVGLLALGVTWFHNRHKAAADVEYPAYGVTGPNKDVSPSGDRKL
AQSAQMYHYQHQKQQIIAMENQATDGSCGMSDVESDDDNEEGDYTVYECP
GLAPTGEMEVKNPLFLDETPATPSNNLSSQTAGAANAAAATNNNITQATP
QQPATLKKGTVKPNINLLNATGTAAAAASAASAASATGGEEPKQKRKSKK
*

LD34489.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG44247-PB 536 CG44247-PB 28..536 342..850 2607 99.4 Plus
CG44247-PA 536 CG44247-PA 28..536 342..850 2607 99.4 Plus
Atf-2-PA 381 CG44246-PA 1..355 1..355 1797 97.7 Plus

LD34489.pep Sequence

Translation from 143 to 2695

> LD34489.pep
MDTAGDMDHLASVSFGDFETKSPEGDVSCYQNFRAQTEHVSLDISLGQKS
DTLFAADQTPTPTRLIKNCDEVGLFEDLQHVNPFDIGFQQAAERNVSGTP
SRPEARPNDGESLHTPQVYPVEAPTVVSVPSENQVPQSVSCGDMDVDQLL
ATTVTSPSKASQDGPPPLQLIQPQVLTWVLPAQSVPISIATVDCNRNRVK
PTGAIHPFILPKPTAKELNKTSKRPEPILVSCNPPNNEPSSASLTPTSQL
PIKERLKAIIHSNNNRRSFSTPPKAAKAKDRSRDEDCMERRRAAASRYRN
KMRNEHKDLIKQNAQLQQENQELHERISRLEKELQQHRSHSSLAGGLRRR
PIQPPVMDPQSEQEYAFLAQMMEQYARRRLQQQFDQQLHEINLKMDRQRQ
LLEQERYRQRQQELQVQREAEEDYESNGNNLNQQYDQYDNAEAEASYGSP
MEAVSDLQSPPLYLPRLPNLPPLPSLPNRPSLGNSPNRNSVLRERIPFAV
GPSDARFFDNPNDPSGELDSRALEDYEEYAPIEPTTEVATTASKTKIDTP
VPAPVPVEPPKLLDAANTNFHRINPQSAAAAAVAGVNIPQSKEQPPHELN
ALINKLQKQSKAPSHLTLVNGGDSSQEQIVLRQHLGMNSEMGVYIVALIA
GVSAAVTVGLLALGVTWFHNRHKAAADVEYPAYGVTGPNKDVSPSGDRKL
AQSAQMYHYQHQKQQIIAMENQATDGSCGMSDVESDDDNEEGDYTVYECP
GLAPTGEMEVKNPLFLDETPATPSNNLSSQTAGAANAAAATNNNITQATP
QQPATLKKGTVKPNINLLNATGTAAAAASAASAASATGGEEPKQKRKSKK
*

LD34489.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13346-PA 536 GF13346-PA 24..535 338..850 1921 84.2 Plus
Dana\GF13345-PA 370 GF13345-PA 1..339 1..345 1045 64.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23014-PA 542 GG23014-PA 28..542 342..850 2595 95.7 Plus
Dere\GG23012-PA 381 GG23012-PA 1..345 1..345 1619 90.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20365-PA 531 GH20365-PA 30..531 346..850 1490 66.5 Plus
Dgri\GH20364-PA 393 GH20364-PA 1..345 1..335 772 53.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG44247-PB 536 CG44247-PB 28..536 342..850 2607 99.4 Plus
CG44247-PA 536 CG44247-PA 28..536 342..850 2607 99.4 Plus
Atf-2-PA 381 CG44246-PA 1..355 1..355 1797 97.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20038-PA 510 GI20038-PA 26..482 342..818 1381 68.8 Plus
Dmoj\GI20037-PA 382 GI20037-PA 1..353 1..346 747 53.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11194-PA 523 GL11194-PA 28..523 342..850 1996 81.2 Plus
Dper\GL17691-PA 379 GL17691-PA 1..343 1..345 955 62.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24636-PA 527 GA24636-PA 28..527 342..850 1997 81.5 Plus
Dpse\GA24876-PA 379 GA24876-PA 1..343 1..345 947 61.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11907-PA 381 GM11907-PA 1..345 1..345 1671 93.9 Plus
Dsec\GM11686-PA 299 GM11686-PA 1..279 1..279 1350 91 Plus
Dsec\GM11908-PA 274 GM11908-PA 28..268 342..582 1007 96.3 Plus
Dsec\GM11909-PA 199 GM11909-PA 1..199 641..850 948 92.9 Plus
Dsec\GM18751-PA 185 GM18751-PA 28..162 342..476 673 94.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11906-PA 536 GD11906-PA 28..536 342..850 2646 98 Plus
Dsim\GD11905-PA 381 GD11905-PA 1..345 1..345 1682 94.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21282-PA 531 GJ21282-PA 26..531 342..850 1377 66.7 Plus
Dvir\GJ21281-PA 392 GJ21281-PA 1..366 1..355 704 50.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21678-PA 516 GK21678-PA 24..516 342..850 1832 72.4 Plus
Dwil\GK21677-PA 374 GK21677-PA 1..347 1..355 771 55.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14451-PA 537 GE14451-PA 28..537 342..850 2597 96.1 Plus
Dyak\GE14449-PA 375 GE14449-PA 1..339 7..345 1603 92 Plus