Clone LD34544 Report

Search the DGRC for LD34544

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:345
Well:44
Vector:pOT2
Associated Gene/TranscriptArt3-RA
Protein status:LD34544.pep: gold
Preliminary Size:1839
Sequenced Size:1723

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6563 2001-01-01 Release 2 assignment
CG6563 2001-07-04 Blastp of sequenced clone
Art3 2008-04-29 Release 5.5 accounting
Art3 2008-08-15 Release 5.9 accounting
Art3 2008-12-18 5.12 accounting

Clone Sequence Records

LD34544.complete Sequence

1723 bp (1723 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051841

> LD34544.complete
CCGCTCAAAACCCCATTTAGTTGGCATTTATAAATTTGTGATCTTCGTCG
TGCGATTTGAATTCTTTTCTCTGAAAGCAGGCCAATAGGACTTGCAAACA
AAGATAGCATGAAAGACACCGAGGTCAACGACAACACCACAGAGGAGGAG
CCCGTGAAGGAGGCACCTGAGGTGCCGGCCAATTCCAGCTCCGACGAAGA
TGAGTACGATGACATAGATGACGATGATGAGCCAATGGACGAAGGCGATG
AGCTAACCACTTGTCTGTTTTGCACCGAAACATCTGCAAACATCTCGGTG
GCCATTGACCATCTTGACGCCCGGCATAAAGTGAATCTGTCCCAGCTTCA
GCGTAAATTCGAAATGGACCAGTATTCCTTTATCAAACTGATAAACTACA
TAAGAGCCAAAAAGATCAGTGCCGAGCAGTTATTGTCTGCGGAACATCCG
CTTTGGCAGGATGAGAAGTACCTCCAGCCCGGGGAGTATGAGCCCTGGCT
CTGCTATGACTACGAAGTCCTTAAAACAGACGGCGCTCCGACGCAGCCCT
CGGTTCTGGAGCTACAACAGCGGATTGCTGAGCAGTCGCAATTGCTGCAG
CAGGCCAACGAGGACATGGAACGCATGCGCAACGACTACAAGGCGCTGCT
GCAAAAGGTACATGCTGACGGCGAGCCCAAAGGTTCCGACCAGAGCGTAC
CGCGTAACAACGTTTGTCTCGACAACGAATACTTCAAAAGCTACGCCCAC
TTTGGCATTCACCATGAAATGCTCAGCGACAAGGTGCGGACCAGCACCTA
TCGCGCGTCTTTGCTCCAAAACGAGGCCGTTGTTCGGGGCAAGACAGTGT
TGGATGTGGGATGCGGCACGGGAATCCTATCCATCTTCGCCTCCAAAGCG
GGTGCAGCTCGCGTTGTCGGCATAGATAACTCGGACATTGTGTACACCGC
CATGGATATCATCAGGAAGAACAAGGTTGAGAATGTTGAACTGATCAAGG
GACGGCTGGAGGACACAGATCTCCCAGAGACTAAATACGACATTATAATA
TCCGAATGGATGGGCTATTTTCTTTTGTACGAATCAATGCTGGACAGCAT
TATCTACGCCCGCGAGAATCACCTCAACCCCAATGGCATAATACTGCCCA
GTCGCTGTACACTCAGTCTCTTGGGCTATGGAGACGACACGCTTTATGCC
GATGAAGTGGAATTCTGGTCTAACGTTTACGAGGTCGACATGAGCGATCT
GCGAAAGCAATCAATAGAGGAGCCACTCATGCAGGTGGTGGATGCAGAGT
TCATGCTGACGGAACCCGAACAGATAGCTAACTTCGACATAATGACCGTC
GATATGAACTATCCAAACTTTACTCACCAGTTTAGCTTAAAGGTCACGAA
GCCGGGACGATTATCCGCCTTTGTCGGTTACTTTGAAACATTGTTTGAAC
TACCCTCCCCCGTCATGTTCAGCACATCACCATCTGCGACGCCCACCCAT
TGGAAGCAAACGGTTTTCTTCATCGAGAACCCGCAGGTTGTGAAGGAAGG
AGACGTCATTTGTGGGAAAATCACGTCAAGAAGACATAAAGAGGATGTCA
GAGGACTTAGTGTGGACATAGAAGTCTTTGGCAAGAAACACAAATACAAT
GTGGTTTAATGTGCTTCTTTTTGAATAGAATTAAATAAAATACGCTTGAA
GATCTAAAAAAAAAAAAAAAAAA

LD34544.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-RA 1911 Art3-RA 154..1860 1..1707 8535 100 Plus
Art3.a 1782 Art3.a 67..1766 1..1707 8405 99.5 Plus
Art3-RB 1835 Art3-RB 260..1835 130..1705 7880 100 Plus
Art3-RB 1835 Art3-RB 67..196 1..130 650 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11052235..11053810 1705..130 7850 99.9 Minus
chr3R 27901430 chr3R 11053874..11054003 130..1 650 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:28:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15227603..15229180 1707..130 7890 100 Minus
3R 32079331 3R 15229244..15229373 130..1 650 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14968434..14970011 1707..130 7890 100 Minus
3R 31820162 3R 14970075..14970204 130..1 650 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:27:47 has no hits.

LD34544.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:28:41 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11052235..11053809 131..1705 99 <- Minus
chr3R 11053874..11054003 1..130 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:36 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 1..1551 109..1659 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:18:39 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 1..1551 109..1659 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:20:48 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 1..1551 109..1659 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:16 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 1..1551 109..1659 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:23:38 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 1..1551 109..1659 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:14:03 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 67..1771 1..1705 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:18:39 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 67..1771 1..1705 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:20:48 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 36..1740 1..1705 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:16 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 67..1771 1..1705 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:23:38 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 36..1740 1..1705 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:41 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15227605..15229179 131..1705 100 <- Minus
3R 15229244..15229373 1..130 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:41 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15227605..15229179 131..1705 100 <- Minus
3R 15229244..15229373 1..130 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:41 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15227605..15229179 131..1705 100 <- Minus
3R 15229244..15229373 1..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:20:48 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11053327..11054901 131..1705 100 <- Minus
arm_3R 11054966..11055095 1..130 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:28:31 Download gff for LD34544.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14968436..14970010 131..1705 100 <- Minus
3R 14970075..14970204 1..130 100   Minus

LD34544.pep Sequence

Translation from 108 to 1658

> LD34544.pep
MKDTEVNDNTTEEEPVKEAPEVPANSSSDEDEYDDIDDDDEPMDEGDELT
TCLFCTETSANISVAIDHLDARHKVNLSQLQRKFEMDQYSFIKLINYIRA
KKISAEQLLSAEHPLWQDEKYLQPGEYEPWLCYDYEVLKTDGAPTQPSVL
ELQQRIAEQSQLLQQANEDMERMRNDYKALLQKVHADGEPKGSDQSVPRN
NVCLDNEYFKSYAHFGIHHEMLSDKVRTSTYRASLLQNEAVVRGKTVLDV
GCGTGILSIFASKAGAARVVGIDNSDIVYTAMDIIRKNKVENVELIKGRL
EDTDLPETKYDIIISEWMGYFLLYESMLDSIIYARENHLNPNGIILPSRC
TLSLLGYGDDTLYADEVEFWSNVYEVDMSDLRKQSIEEPLMQVVDAEFML
TEPEQIANFDIMTVDMNYPNFTHQFSLKVTKPGRLSAFVGYFETLFELPS
PVMFSTSPSATPTHWKQTVFFIENPQVVKEGDVICGKITSRRHKEDVRGL
SVDIEVFGKKHKYNVV*

LD34544.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11802-PA 520 GF11802-PA 1..520 1..516 2022 74 Plus
Dana\GF17088-PA 372 GF17088-PA 52..354 208..506 659 43.2 Plus
Dana\GF18899-PA 348 GF18899-PA 25..330 206..506 526 37.5 Plus
Dana\GF14882-PA 369 GF14882-PA 47..343 208..504 480 35.8 Plus
Dana\GF14044-PA 343 GF14044-PA 4..310 206..505 461 36.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20792-PA 517 GG20792-PA 1..517 1..516 2400 90.7 Plus
Dere\GG17264-PA 397 GG17264-PA 77..379 208..506 646 42.6 Plus
Dere\GG17013-PA 345 GG17013-PA 20..326 205..506 557 39.8 Plus
Dere\GG24386-PA 355 GG24386-PA 32..332 207..507 475 35.3 Plus
Dere\GG10333-PA 341 GG10333-PA 1..310 204..507 419 33.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18753-PA 507 GH18753-PA 39..506 50..515 1779 70.6 Plus
Dgri\GH19565-PA 382 GH19565-PA 62..367 208..509 659 43.5 Plus
Dgri\GH13621-PA 342 GH13621-PA 4..311 208..507 431 33.8 Plus
Dgri\GH16647-PA 336 GH16647-PA 20..312 210..505 410 33.1 Plus
Dgri\GH14177-PA 544 GH14177-PA 151..462 206..508 406 31.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-PA 516 CG6563-PA 1..516 1..516 2698 100 Plus
Art3-PB 474 CG6563-PB 1..474 43..516 2474 100 Plus
Art1-PA 376 CG6554-PA 31..358 182..506 636 40.4 Plus
Art6-PA 341 CG9927-PA 16..322 205..506 521 38.5 Plus
Art2-PB 355 CG3675-PB 30..331 205..506 467 35.2 Plus
Art2-PA 355 CG3675-PA 30..331 205..506 467 35.2 Plus
Art8-PA 341 CG16840-PA 3..309 206..506 405 33.9 Plus
Art4-PB 530 CG5358-PB 142..453 206..508 392 31.6 Plus
Art4-PA 530 CG5358-PA 142..453 206..508 392 31.6 Plus
CG32152-PC 357 CG32152-PC 12..320 213..516 334 27.4 Plus
CG32152-PB 357 CG32152-PB 12..320 213..516 334 27.4 Plus
Art9-PA 313 CG9929-PA 15..287 221..488 303 29.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24669-PA 431 GI24669-PA 1..430 86..515 1602 66.8 Plus
Dmoj\GI23860-PA 387 GI23860-PA 50..369 186..506 664 42 Plus
Dmoj\GI20553-PA 341 GI20553-PA 2..310 206..507 453 34 Plus
Dmoj\GI12675-PA 632 GI12675-PA 316..596 231..508 411 31.4 Plus
Dmoj\GI11605-PA 338 GI11605-PA 23..312 211..505 408 31.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12077-PA 514 GL12077-PA 48..513 50..515 1856 73.7 Plus
Dper\GL12503-PA 235 GL12503-PA 13..234 261..515 854 64.7 Plus
Dper\GL21930-PA 392 GL21930-PA 41..377 180..509 651 39.8 Plus
Dper\GL23322-PA 351 GL23322-PA 11..336 192..512 517 34.6 Plus
Dper\GL16439-PA 366 GL16439-PA 37..338 208..504 495 34.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19687-PB 481 GA19687-PB 1..480 36..515 1881 72.6 Plus
Dpse\GA19687-PA 514 GA19687-PA 48..513 50..515 1850 73.5 Plus
Dpse\GA19682-PA 392 GA19682-PA 41..377 180..509 651 39.8 Plus
Dpse\GA27221-PA 351 GA27221-PA 14..336 195..512 508 34.8 Plus
Dpse\GA17605-PA 366 GA17605-PA 37..338 208..504 494 34.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25795-PA 516 GM25795-PA 1..516 1..516 2511 94.2 Plus
Dsec\GM26148-PA 397 GM26148-PA 77..379 208..506 636 41.9 Plus
Dsec\GM25897-PA 444 GM25897-PA 119..425 205..506 535 38.9 Plus
Dsec\GM18100-PA 355 GM18100-PA 33..331 208..506 477 36.2 Plus
Dsec\GM11203-PA 341 GM11203-PA 1..310 204..507 416 33.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20372-PA 477 GD20372-PA 1..477 1..516 2279 87.6 Plus
Dsim\GD20702-PA 397 GD20702-PA 77..379 208..506 647 42.6 Plus
Dsim\GD20467-PA 341 GD20467-PA 16..331 205..515 535 38.1 Plus
Dsim\GD22717-PA 355 GD22717-PA 33..331 208..506 482 36.5 Plus
Dsim\GD22203-PA 325 GD22203-PA 1..301 204..498 413 34.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24043-PA 508 GJ24043-PA 15..507 27..515 1843 68.8 Plus
Dvir\GJ10573-PA 381 GJ10573-PA 41..363 188..506 660 41.8 Plus
Dvir\GJ13894-PA 341 GJ13894-PA 2..310 206..507 445 33.7 Plus
Dvir\GJ11284-PA 311 GJ11284-PA 1..285 222..505 406 32.2 Plus
Dvir\GJ24202-PA 538 GJ24202-PA 149..460 206..508 406 31.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12781-PA 517 GK12781-PA 38..516 43..515 1708 65.1 Plus
Dwil\GK13389-PA 382 GK13389-PA 3..364 148..506 680 40.1 Plus
Dwil\GK24448-PA 383 GK24448-PA 51..357 205..506 548 36.8 Plus
Dwil\GK22483-PA 344 GK22483-PA 16..301 207..486 491 35.9 Plus
Dwil\GK14886-PA 340 GK14886-PA 1..310 204..507 438 32.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26400-PA 516 GE26400-PA 1..516 1..516 2426 90.9 Plus
Dyak\GE24666-PA 378 GE24666-PA 58..360 208..506 649 42.6 Plus
Dyak\GE24405-PA 345 GE24405-PA 20..326 205..506 548 39.5 Plus
Dyak\GE14754-PA 355 GE14754-PA 32..331 207..506 445 34.8 Plus
Dyak\GE13077-PA 341 GE13077-PA 1..310 204..507 424 33.8 Plus

LD34544.hyp Sequence

Translation from 108 to 1658

> LD34544.hyp
MKDTEVNDNTTEEEPVKEAPEVPANSSSDEDEYDDIDDDDEPMDEGDELT
TCLFCTETSANISVAIDHLDARHKVNLSQLQRKFEMDQYSFIKLINYIRA
KKISAEQLLSAEHPLWQDEKYLQPGEYEPWLCYDYEVLKTDGAPTQPSVL
ELQQRIAEQSQLLQQANEDMERMRNDYKALLQKVHADGEPKGSDQSVPRN
NVCLDNEYFKSYAHFGIHHEMLSDKVRTSTYRASLLQNEAVVRGKTVLDV
GCGTGILSIFASKAGAARVVGIDNSDIVYTAMDIIRKNKVENVELIKGRL
EDTDLPETKYDIIISEWMGYFLLYESMLDSIIYARENHLNPNGIILPSRC
TLSLLGYGDDTLYADEVEFWSNVYEVDMSDLRKQSIEEPLMQVVDAEFML
TEPEQIANFDIMTVDMNYPNFTHQFSLKVTKPGRLSAFVGYFETLFELPS
PVMFSTSPSATPTHWKQTVFFIENPQVVKEGDVICGKITSRRHKEDVRGL
SVDIEVFGKKHKYNVV*

LD34544.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-PA 516 CG6563-PA 1..516 1..516 2698 100 Plus
Art3-PB 474 CG6563-PB 1..474 43..516 2474 100 Plus
Art1-PA 376 CG6554-PA 31..358 182..506 636 40.4 Plus
Art6-PA 341 CG9927-PA 16..322 205..506 521 38.5 Plus
Art2-PB 355 CG3675-PB 30..331 205..506 467 35.2 Plus