Clone LD34582 Report

Search the DGRC for LD34582

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:345
Well:82
Vector:pOT2
Associated Gene/TranscriptCG31961-RA
Protein status:LD34582.pep: gold
Preliminary Size:1530
Sequenced Size:1333

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31961 2001-09-19 Blastp of sequenced clone
CG31961 2003-01-01 Sim4 clustering to Release 3
CG31961 2008-04-29 Release 5.5 accounting
CG31961 2008-08-15 Release 5.9 accounting
CG31961 2008-12-18 5.12 accounting

Clone Sequence Records

LD34582.complete Sequence

1333 bp (1333 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058646

> LD34582.complete
CAACGATTAGGCAACATTTGTTATTGTGAGCAGCTGCACAAAATAATAAG
AAAATTAAACAAAAGATTGATACCGAAAATCATGGAAGGCGACGCGGAAA
ATCGCAAGGATCAAATCCTCGAGCGTTTGAACAAAAGAAACAAGGACAGG
CAAAACTATTTGGATGTGAAATCGGAGCTGCGTTCCAAGGAAACAGTGCA
GAACGAGGGCGTTGACTACTTCTACCAGACTTTCAGCCAAAAAACCATGG
ATATAGAGCAGCGATTAAAGGATGTGCAGTGCGGCGATGGCCAGCCAACC
GATTTGGCCAGAAACTTCGCCGACATAACTGTGGAGATCCAGGATCTGCA
GCGATATCTCACCGCATCCACCATGTTTCTGCCCGACTTCAAGATCAAAT
CCTGTCAGAATATCCTTAACACCCTGACCGCCGTCAGTGATGAAACCCGC
CAGCGCCTGTTGCCCAAGAAAAAGTTTGGTTTCAGTGGCAAAAAGACCGT
CACAAAGCCAAAAGTCCCTCCAAATAAGGATATAGTCGACGCGAAACTCA
GTAAAGTCCCAGAAAAACTAGGCTCCAATTTCACGTGGACGATTGCCAAT
CGAACGAACGAGCATATAGTCCTGGATTCCGCTAAAGTCAATGGCCAGGA
CATCACAATATCGAAACTGAACCACTGTTTGGTTGAACTGCAGGGTCATC
CCGGTTCTGTGCAGGTTTCCAGGGCCTCCAAATGCACGCTGCTATGCGGC
CCCATCGCACGCTCCTTCTTCGCCGAGAATCTCGAGGATTGCACCCTCTC
CATTGCCTGCCAGCAGTTGAGGTTGCACTCCTCCCGGTCCATTCGCATAT
ACATGCATGTCACCTGCCGCGCAATAATCGAGGATTGCAAGAGTATTGAG
ATCGGAGAGTACAACTACGATTATTCCAAACTGGAGGCCGACTACCTAGC
TTCTGGACTGAATAAGGCACAGAACAACTATACGGATGTGGCCGATTTTA
ACTGGCTTTCGCCGGATGTCCCCTCGCCGAACTGGAGCCTCCTCAAGGAT
TATCCCGATCCGAATTGGAACGCCTTAAGGCGCGACTTTATTGCCAATAA
CCATAACAGCGAACTTAAGCAGGATGTCAAGGACATATCCATCATTTAGT
GGCGGCATCGGCGGCTGCTCCTCGGTTGGCTAGCCTACGGCATCATCCTC
GGTTGGCTGCTCTGGGAAATGCTGCTGCGGCCCTCAGTTACAGGCCCAAA
ATCTAATCCTCGATCTGTGTAATTAGCTATAAGCGTGTTGATTAAATAAC
CATTATGTAAAAAACAAAAAAAAAAAAAAAAAA

LD34582.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31961-RA 1393 CG31961-RA 15..1334 1..1320 6600 100 Plus
CG31961-RB 1479 CG31961-RB 224..1478 66..1320 6275 100 Plus
CG31961-RB 1479 CG31961-RB 15..86 1..72 330 97.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4185459..4186710 1315..64 6155 99.4 Minus
chr2L 23010047 chr2L 4186913..4186984 72..1 300 94.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4186245..4187501 1320..64 6285 100 Minus
2L 23513712 2L 4187704..4187775 72..1 330 97.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4186245..4187501 1320..64 6285 100 Minus
2L 23513712 2L 4187704..4187775 72..1 330 97.2 Minus
Blast to na_te.dros performed on 2019-03-16 11:09:22 has no hits.

LD34582.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:10:20 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4185459..4186708 66..1315 99 <- Minus
chr2L 4186920..4186984 1..65 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:39 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
CG31961-RB 1..1068 82..1149 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:53 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
CG31961-RB 1..1068 82..1149 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:37:16 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
CG31961-RA 1..1068 82..1149 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:18 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
CG31961-RB 1..1068 82..1149 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:55 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
CG31961-RA 1..1068 82..1149 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:31 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
CG31961-RA 15..1329 1..1315 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:53 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
CG31961-RA 15..1329 1..1315 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:16 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
CG31961-RA 19..1333 1..1315 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:19 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
CG31961-RA 15..1329 1..1315 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:55 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
CG31961-RA 19..1333 1..1315 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:20 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4186250..4187499 66..1315 100 <- Minus
2L 4187711..4187775 1..65 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:20 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4186250..4187499 66..1315 100 <- Minus
2L 4187711..4187775 1..65 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:20 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4186250..4187499 66..1315 100 <- Minus
2L 4187711..4187775 1..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:16 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4186250..4187499 66..1315 100 <- Minus
arm_2L 4187711..4187775 1..65 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:50 Download gff for LD34582.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4186250..4187499 66..1315 100 <- Minus
2L 4187711..4187775 1..65 100   Minus

LD34582.hyp Sequence

Translation from 0 to 1148

> LD34582.hyp
QRLGNICYCEQLHKIIRKLNKRLIPKIMEGDAENRKDQILERLNKRNKDR
QNYLDVKSELRSKETVQNEGVDYFYQTFSQKTMDIEQRLKDVQCGDGQPT
DLARNFADITVEIQDLQRYLTASTMFLPDFKIKSCQNILNTLTAVSDETR
QRLLPKKKFGFSGKKTVTKPKVPPNKDIVDAKLSKVPEKLGSNFTWTIAN
RTNEHIVLDSAKVNGQDITISKLNHCLVELQGHPGSVQVSRASKCTLLCG
PIARSFFAENLEDCTLSIACQQLRLHSSRSIRIYMHVTCRAIIEDCKSIE
IGEYNYDYSKLEADYLASGLNKAQNNYTDVADFNWLSPDVPSPNWSLLKD
YPDPNWNALRRDFIANNHNSELKQDVKDISII*

LD34582.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31961-PB 355 CG31961-PB 1..355 28..382 1862 100 Plus
CG31961-PA 355 CG31961-PA 1..355 28..382 1862 100 Plus

LD34582.pep Sequence

Translation from 81 to 1148

> LD34582.pep
MEGDAENRKDQILERLNKRNKDRQNYLDVKSELRSKETVQNEGVDYFYQT
FSQKTMDIEQRLKDVQCGDGQPTDLARNFADITVEIQDLQRYLTASTMFL
PDFKIKSCQNILNTLTAVSDETRQRLLPKKKFGFSGKKTVTKPKVPPNKD
IVDAKLSKVPEKLGSNFTWTIANRTNEHIVLDSAKVNGQDITISKLNHCL
VELQGHPGSVQVSRASKCTLLCGPIARSFFAENLEDCTLSIACQQLRLHS
SRSIRIYMHVTCRAIIEDCKSIEIGEYNYDYSKLEADYLASGLNKAQNNY
TDVADFNWLSPDVPSPNWSLLKDYPDPNWNALRRDFIANNHNSELKQDVK
DISII*

LD34582.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24566-PA 360 GF24566-PA 1..360 1..355 1434 76.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24392-PA 355 GG24392-PA 1..355 1..355 1768 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10233-PA 366 GH10233-PA 12..346 2..337 1125 64.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
TBCC-PB 355 CG31961-PB 1..355 1..355 1862 100 Plus
TBCC-PA 355 CG31961-PA 1..355 1..355 1862 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15190-PA 363 GI15190-PA 13..358 4..351 1158 66.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19291-PA 364 GL19291-PA 5..350 1..342 1254 71.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16589-PA 364 GA16589-PA 5..350 1..342 1254 69.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18108-PA 355 GM18108-PA 1..355 1..355 1849 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11992-PA 355 GD11992-PA 1..355 1..355 1866 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17259-PA 369 GJ17259-PA 16..369 4..355 1203 68.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23765-PA 369 GK23765-PA 9..369 8..355 1166 66 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14769-PA 355 GE14769-PA 1..355 1..355 1735 94.9 Plus