Clone LD34806 Report

Search the DGRC for LD34806

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:348
Well:6
Vector:pOT2
Associated Gene/TranscriptCG31849-RA
Protein status:LD34806.pep: gold
Preliminary Size:2426
Sequenced Size:2189

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31849 2001-10-10 Blastp of sequenced clone
CG31849 2003-01-01 Sim4 clustering to Release 3
CG31849 2008-04-29 Release 5.5 accounting
CG31849 2008-08-15 Release 5.9 accounting
CG31849 2008-12-18 5.12 accounting

Clone Sequence Records

LD34806.complete Sequence

2189 bp (2189 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061417

> LD34806.complete
TTGAGGGGTGCCGTAAAATTTTTGGGCGTGTTTGCCAGCAGAAGAAAAGC
GTGAAAAGTACGAAAAATCGAAACGGAATGAGCAGGATGAACTGCAGAAA
GTGAACCAGTGACCATGGTGAGAAGCACATTCCTGGCCACCTACAACCAG
ACACCGGTAGCCGGCGTTGGACGGCTGGCCATCACCAAGAAGCTGGTGCT
CTGGTTGGTGCTGGTGCTGCAGGTGGGCTTCATCGGCTGCATATGGCTGC
TGCAGATGAGCCGTGGCCAGGAGTCGCAGCAGCGCAGTGCAATGGACCAA
CTTGGCGGACGGGTCAACTTCGTGGCCAGCGGTGAAGCCCCTATGGAGAA
GATGGCACTTGTGGGCGGAACCCACTGTCCGCATCTGCAGGAGAATGTCA
ACCGCTACGACAAGGACTTTTATCAAATGAAACCGGAACGACTGAACGAA
TCCCACCTGCCCGACTACAATGTGCCCGCCTATGTGGACGCGGAGATGGG
TCTAACCCCAAACCTCTGGTGCTATCGCGAGGGGACCATCAACGAGAGCC
AGCGGCTCAACGATGTGGACTATCTGATGGCGCCGCCTCAATGCAGATGT
GAAAGTGGCTGGCACGGCAGAGATTGCGGCCAGCCGGAGATCATATGGCG
AGCCCTGATGACGTCCAATCGGGCCAGTAAACGAGGCGGTAGCACACCGC
TTCAACTGGTCGAGGCCAGTTCTTCTTCACTGCACCGCCTGTTCTATATG
CTTGAATTGGGCGCCTGGGACCACCTAAGTCTGGAGCTCTTGGAGCTGCA
AATTCGAGCGCTCATCGAGGTTGTGGACTACTTTCTCATATACTATGTGA
GCAACGGCAGCAAGGAGCGGAGTCTGGAGAGCATGCTGGGCAGCCAAACG
AGCTATACGCTACTACGCTGCTCCTCCGAGAGCAACTGCACCAGCTCAAT
GGCCTACAGTCACTTTAGGCGGCAGCTGTGGCAGCAGTGTGGTGTCCAAA
TGCAGGCACAGGACCTGCTGCTGCACGGGGACAGTGGAACGGTCTACGCG
CCAGCAGCACTCAAGTTTCTGAAGTACTATGCCAAGGATGTGCTGCCGCT
GAAATTTCGTTTGAAGTACAATGTATATGGATTCTACTGGCAGCATCCGA
AGAAGACCCTCCTAAATGGGGTGATAAGTTCCTTGGGGCACCTGCACAGT
GCCCAACTGGATGCTCACCGCCTGCACCGGCTGGCGAGCAGCACACTGGG
TGATCTCAACCACTACGGCGGCTGGAACTGCGAGCTGTGCCTGCCTCCCG
AGCAGATTGTGCTCCTGCTGCAGAGCTCCAGTCCCCGCAAGCTGCCAGTA
AAACTACCCAACGATACCCGCAATGCCCACATCGATGCCAACTACATGCA
GCAACTGATAGCCAATGGAGTTCACATCGATGGCACCACGCAGCTGCACC
GCTTGCGGGAGCAGAGCGAGAAGTATTTCGCTCCGGAGGAGGCGCTCCAG
CACAGCAGCCAGTACGGCCAGCTGCTGGTGAACCTATACGATGTGGACGT
CCTGGAAGATCTGCAGGACGAAGACTAACTACGCCTGCCGAAGTTTGACT
TGGGCATGGCAGCCTATCGAACCAGCATAAACCTACGAATATATATATTT
ATATGTGCCTGCTTTTGAATCCCCATCAAAGTCTAACAATCTCATAATCA
TCATATCATACTCTGCCTAATCCACTCATGCGAATGCCCTTCTGTGTTTT
TGGCCAGGTGAATTCCAAATTTAGTATCTCAGCAGACAGGACAGACAGAC
CCGCCATCTGTGATAAGAAAAACCAGAACTAAACAATGAATTTATGAGAG
GAAGTCGATGCAACCAACTGAGAGAAGTCTCAAATTTGCTGGAAAAAGTT
GTGAAATGGGTTGATCGCAATTTAGCATTATTTTTAAGACATAACACACA
CGATCTGTATGAAAAAGCTTTTTAGACTTACTTTAAATATTAATACCAAT
TATCAGAAGGCAAGCAAATTTAAGCTTAGTTTTGGTTACAATTTTGAAGC
AATTTTGAATTTGTGTTATTACTTTATTACTAACGTACCCTAATTATAAT
TAGACGAAAATTTGTTGACCTTCCAGATCAATTCAGTATTTATAAAAATA
AAAATCAATTGGATTACTCAAAAAAAAAAAAAAAAAAAA

LD34806.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31849-RA 2197 CG31849-RA 28..2197 1..2170 10850 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13179085..13181247 2169..1 10720 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13180397..13182566 2170..1 10850 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13180397..13182566 2170..1 10850 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:43:26 has no hits.

LD34806.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:44:08 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13179085..13181247 1..2169 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:45 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
CG31849-RA 1..1464 115..1578 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:20 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
CG31849-RA 1..1464 115..1578 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:10:50 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
CG31849-RA 1..1464 115..1578 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:21 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
CG31849-RA 1..1464 115..1578 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:39:26 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
CG31849-RA 1..1464 115..1578 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:45 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
CG31849-RA 28..2196 1..2169 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:20 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
CG31849-RA 28..2196 1..2169 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:10:50 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
CG31849-RA 31..2199 1..2169 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:21 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
CG31849-RA 28..2196 1..2169 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:39:26 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
CG31849-RA 31..2199 1..2169 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:08 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13180398..13182566 1..2169 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:08 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13180398..13182566 1..2169 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:08 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13180398..13182566 1..2169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:10:50 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13180398..13182566 1..2169 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:29 Download gff for LD34806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13180398..13182566 1..2169 100   Minus

LD34806.hyp Sequence

Translation from 114 to 1577

> LD34806.hyp
MVRSTFLATYNQTPVAGVGRLAITKKLVLWLVLVLQVGFIGCIWLLQMSR
GQESQQRSAMDQLGGRVNFVASGEAPMEKMALVGGTHCPHLQENVNRYDK
DFYQMKPERLNESHLPDYNVPAYVDAEMGLTPNLWCYREGTINESQRLND
VDYLMAPPQCRCESGWHGRDCGQPEIIWRALMTSNRASKRGGSTPLQLVE
ASSSSLHRLFYMLELGAWDHLSLELLELQIRALIEVVDYFLIYYVSNGSK
ERSLESMLGSQTSYTLLRCSSESNCTSSMAYSHFRRQLWQQCGVQMQAQD
LLLHGDSGTVYAPAALKFLKYYAKDVLPLKFRLKYNVYGFYWQHPKKTLL
NGVISSLGHLHSAQLDAHRLHRLASSTLGDLNHYGGWNCELCLPPEQIVL
LLQSSSPRKLPVKLPNDTRNAHIDANYMQQLIANGVHIDGTTQLHRLREQ
SEKYFAPEEALQHSSQYGQLLVNLYDVDVLEDLQDED*

LD34806.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31849-PA 487 CG31849-PA 1..487 1..487 2580 100 Plus

LD34806.pep Sequence

Translation from 114 to 1577

> LD34806.pep
MVRSTFLATYNQTPVAGVGRLAITKKLVLWLVLVLQVGFIGCIWLLQMSR
GQESQQRSAMDQLGGRVNFVASGEAPMEKMALVGGTHCPHLQENVNRYDK
DFYQMKPERLNESHLPDYNVPAYVDAEMGLTPNLWCYREGTINESQRLND
VDYLMAPPQCRCESGWHGRDCGQPEIIWRALMTSNRASKRGGSTPLQLVE
ASSSSLHRLFYMLELGAWDHLSLELLELQIRALIEVVDYFLIYYVSNGSK
ERSLESMLGSQTSYTLLRCSSESNCTSSMAYSHFRRQLWQQCGVQMQAQD
LLLHGDSGTVYAPAALKFLKYYAKDVLPLKFRLKYNVYGFYWQHPKKTLL
NGVISSLGHLHSAQLDAHRLHRLASSTLGDLNHYGGWNCELCLPPEQIVL
LLQSSSPRKLPVKLPNDTRNAHIDANYMQQLIANGVHIDGTTQLHRLREQ
SEKYFAPEEALQHSSQYGQLLVNLYDVDVLEDLQDED*

LD34806.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15645-PA 471 GF15645-PA 1..471 18..487 1850 72.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10226-PA 488 GG10226-PA 1..488 1..487 2382 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10344-PA 491 GH10344-PA 1..491 1..487 1418 56.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31849-PA 487 CG31849-PA 1..487 1..487 2580 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21171-PA 492 GI21171-PA 7..492 12..487 1410 56.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24769-PA 490 GL24769-PA 1..490 1..486 1895 74.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16523-PA 492 GA16523-PA 1..492 1..486 1866 74.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25823-PA 487 GM25823-PA 1..487 1..487 2567 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22083-PA 487 GD22083-PA 1..487 1..487 2561 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10972-PA 501 GJ10972-PA 8..501 11..487 1413 57.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23725-PA 500 GK23725-PA 13..498 16..487 1495 63.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11886-PA 487 GE11886-PA 1..487 1..487 2412 94.5 Plus