Clone LD34822 Report

Search the DGRC for LD34822

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:348
Well:22
Vector:pOT2
Associated Gene/Transcriptmst-RA
Protein status:LD34822.pep: validated not full length
Preliminary Size:1730
Sequenced Size:1902

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1424 2002-01-01 Sim4 clustering to Release 2
CG1424 2002-05-18 Blastp of sequenced clone
mst 2008-04-29 Release 5.5 accounting
mst 2008-04-29 Picked prior to 5.5
mst 2008-08-15 Release 5.9 accounting
mst 2008-12-18 5.12 accounting

Clone Sequence Records

LD34822.complete Sequence

1902 bp (1902 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118952

> LD34822.complete
GACTATACACGTGAAATTTTGACCTTCCAGTTCGGAACGTACGCGAATTA
CGTGGGCACACACTTCTGGAACCAGCAGGAGGCCAACTTTAGGTACGGAG
ACGAAAGCGAACAGGTGGCCGAGGAGCAGCTGCCCAACAATGATATTTTG
TACCGTGAAGGGCGCAACGACCTCAATCGTACCACCTACACGCCCCGCCT
GCTGTCCGTGGATTTGTCCGGGACCCTGGGACATCTGCCGGTGACCGGCG
AGCTGTACGGCAATTTTGTGCAGCGTGATGAGGAGTTGCTGCCCCTGAGC
ACCGGAGAGGAATTGGAACAGGTTCGCAAGCGGGCAGAGGAGAGCGGCGT
ATGCTCACCGGAGCAGCTGGAAGTGCAGGAGCAGTCGAAGGCCTCCATTT
CCGAATATCAGCGGGATCTGCTCAAGAATGCTGTGGTGCCCGAGAAGAAC
TATCAGCTGGCAGCGACGGCAAACAGTTGGGTGGACTTCCTTTACGCCAG
GTATCACCCGAGAACCTTGAATGTCTTGCCGGGGCTGATCCGAGATCCGA
CTGCCCAAGCCCTGGGTACCTACTCTGCCGGAACAGAAATGTGGCAGGAA
GTCTCCTTCAACGAGGAGTTCTGCGATCGTATCCGTTTGTATGTAGAGGA
GTGCGATGGCCTGCAGGGCTTCCACGTGCTGTTCGACATTGACGATGGCT
TCGGCGGACTGGCTGGGAAGTGCCTGGAGCACCTCAACGATGAGTACAGC
CGGGCGAGTTTCGCGCTGCCACTTCACTATCCCAGGATCACTAGTTATCC
CCAAGCGGATACCCGCCTGTCGCACAGCATTCGGGTGGTAAACAATGTGT
TGGGCTACCACCAACTCAGCGAGCAGGCTTTGATGTTCACGCCGCTATCC
ACGCTGGAGACCATCTGGCGAAACAATAATCTGAAGTCGCGCAGTCTGCC
GGGACTCCAGTGGGAGACGGATAACCTCTACCAGACATCAGCGCTGCTGG
CCGCCTTTTTCGACACGGCCACCTTGAGTTACCGCCTGCGGCAAACGCCA
GAATCTTTGCTACGCTTTTGCGAATGCGTCACTCCAGCGGGCAGAAAGAT
GACCGCCGCTGGATTGGCTCTGCCATTTGGGCTGAGGGAGGGTCAGGATC
TGATAGAGTTTCTAGACCAGAGTGGCGACCACGCGCTGCTCACACAACTC
ACACCGGGCTGTGAGCCTGGCACATCCTACGTGGTGCAATCAGTGACGGC
TCGTGGCATTCCCGCGGAACGTTTGAAACGGCCCAGGGAGCTGGCCGGCG
ATCAACTTCGGATGGCTGCCTATAGCTGCGATAGTATATCCCATATGCTG
CAGCTATACTACCAGTGCACCTATCATGGAAGTGTTACAAATGCGGCAGC
CACACCACTGCCACTAAAGACACAGCTACCTTTTCCTTATGAAATGTTTG
CAGCCGGTATATCACGCGATGGCTACCGCTTGCCTGAGGGGGCGGAACGC
GAGACGGGTAGTCGTGTGGATTCGGCACCCATGCTGGCCGCCGTACAGAA
CTCCACCAAGCTGGGCGAGCATCTGGACAATGTGCACGCCCAATCGCATC
GAGTGCAGCTGGCCAAGTTGCAAGCGTACTCTAATTCTGGATTGGAGCGG
GATGAGTACGATACGGCGCTGGATCAGCTGCTTGAGTTCCGCGACCTTTA
CGCAGACTCGCAGTATCTATAGGATGCTGTGGTTTTGGAAACTAAGATTT
TGTGATAAGCCTAGGATTATGTACACAAAAAACACTCGTATACAGTCGAA
TTCAAGATGAATATGTCATTTTATATTGCCTCCGAATTATATTTTCGTTT
AGTTCAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAA
AA

LD34822.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
mst.a 2383 mst.a 121..1978 1..1858 9290 100 Plus
mst-RA 2001 mst-RA 121..1978 1..1858 9290 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21255094..21256144 808..1858 5255 100 Plus
chrX 22417052 chrX 21254303..21255035 76..808 3650 99.9 Plus
chrX 22417052 chrX 21254173..21254251 1..79 395 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21389936..21390986 808..1858 5255 100 Plus
X 23542271 X 21389145..21389877 76..808 3665 100 Plus
X 23542271 X 21389015..21389093 1..79 395 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21375028..21376078 808..1858 5255 100 Plus
X 23527363 X 21374237..21374969 76..808 3665 100 Plus
X 23527363 X 21374107..21374185 1..79 395 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:53:06 has no hits.

LD34822.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:54:16 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21254173..21254250 1..78 100 -> Plus
chrX 21254306..21255035 79..808 99 -> Plus
chrX 21255095..21256141 809..1855 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:46 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
mst-RA 4..1725 1..1722 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:29 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
mst-RA 4..1725 1..1722 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:29 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
mst-RA 4..1725 1..1722 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:40 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
mst-RA 4..1725 1..1722 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:23:33 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
mst-RA 4..1725 1..1722 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:19:28 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
mst-RA 9..1730 1..1722 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:29 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
mst-RA 9..1863 1..1855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:29 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
mst-RA 39..1893 1..1855 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:40 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
mst-RA 9..1730 1..1722 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:23:33 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
mst-RB 39..1893 1..1855 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:16 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
X 21389015..21389092 1..78 100 -> Plus
X 21389148..21389877 79..808 100 -> Plus
X 21389937..21390983 809..1855 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:16 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
X 21389015..21389092 1..78 100 -> Plus
X 21389148..21389877 79..808 100 -> Plus
X 21389937..21390983 809..1855 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:16 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
X 21389015..21389092 1..78 100 -> Plus
X 21389148..21389877 79..808 100 -> Plus
X 21389937..21390983 809..1855 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:29 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21260042..21260119 1..78 100 -> Plus
arm_X 21260175..21260904 79..808 100 -> Plus
arm_X 21260964..21262010 809..1855 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:09:04 Download gff for LD34822.complete
Subject Subject Range Query Range Percent Splice Strand
X 21374240..21374969 79..808 100 -> Plus
X 21375029..21376075 809..1855 100   Plus
X 21374107..21374184 1..78 100 -> Plus

LD34822.pep Sequence

Translation from 0 to 1721

> LD34822.pep
DYTREILTFQFGTYANYVGTHFWNQQEANFRYGDESEQVAEEQLPNNDIL
YREGRNDLNRTTYTPRLLSVDLSGTLGHLPVTGELYGNFVQRDEELLPLS
TGEELEQVRKRAEESGVCSPEQLEVQEQSKASISEYQRDLLKNAVVPEKN
YQLAATANSWVDFLYARYHPRTLNVLPGLIRDPTAQALGTYSAGTEMWQE
VSFNEEFCDRIRLYVEECDGLQGFHVLFDIDDGFGGLAGKCLEHLNDEYS
RASFALPLHYPRITSYPQADTRLSHSIRVVNNVLGYHQLSEQALMFTPLS
TLETIWRNNNLKSRSLPGLQWETDNLYQTSALLAAFFDTATLSYRLRQTP
ESLLRFCECVTPAGRKMTAAGLALPFGLREGQDLIEFLDQSGDHALLTQL
TPGCEPGTSYVVQSVTARGIPAERLKRPRELAGDQLRMAAYSCDSISHML
QLYYQCTYHGSVTNAAATPLPLKTQLPFPYEMFAAGISRDGYRLPEGAER
ETGSRVDSAPMLAAVQNSTKLGEHLDNVHAQSHRVQLAKLQAYSNSGLER
DEYDTALDQLLEFRDLYADSQYL*

LD34822.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20926-PA 576 GF20926-PA 3..576 2..573 2440 78 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19729-PA 574 GG19729-PA 2..574 1..573 2869 93.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24680-PA 570 GH24680-PA 2..570 1..573 2005 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
mst-PB 574 CG1424-PB 2..574 1..573 3000 100 Plus
mst-PA 574 CG1424-PA 2..574 1..573 3000 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21660-PA 570 GI21660-PA 4..570 3..573 2053 67.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16019-PA 555 GL16019-PA 2..555 1..573 2027 65.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12852-PA 574 GA12852-PA 2..574 1..573 2283 71.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23085-PA 540 GM23085-PA 4..540 37..573 2727 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17537-PA 574 GD17537-PA 2..574 1..573 2940 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16019-PA 572 GJ16019-PA 2..572 1..573 2179 69.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25434-PA 572 GK25434-PA 2..572 1..573 2137 68.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17927-PA 574 GE17927-PA 2..574 1..573 2865 92.8 Plus

LD34822.hyp Sequence

Translation from 0 to 1721

> LD34822.hyp
DYTREILTFQFGTYANYVGTHFWNQQEANFRYGDESEQVAEEQLPNNDIL
YREGRNDLNRTTYTPRLLSVDLSGTLGHLPVTGELYGNFVQRDEELLPLS
TGEELEQVRKRAEESGVCSPEQLEVQEQSKASISEYQRDLLKNAVVPEKN
YQLAATANSWVDFLYARYHPRTLNVLPGLIRDPTAQALGTYSAGTEMWQE
VSFNEEFCDRIRLYVEECDGLQGFHVLFDIDDGFGGLAGKCLEHLNDEYS
RASFALPLHYPRITSYPQADTRLSHSIRVVNNVLGYHQLSEQALMFTPLS
TLETIWRNNNLKSRSLPGLQWETDNLYQTSALLAAFFDTATLSYRLRQTP
ESLLRFCECVTPAGRKMTAAGLALPFGLREGQDLIEFLDQSGDHALLTQL
TPGCEPGTSYVVQSVTARGIPAERLKRPRELAGDQLRMAAYSCDSISHML
QLYYQCTYHGSVTNAAATPLPLKTQLPFPYEMFAAGISRDGYRLPEGAER
ETGSRVDSAPMLAAVQNSTKLGEHLDNVHAQSHRVQLAKLQAYSNSGLER
DEYDTALDQLLEFRDLYADSQYL*

LD34822.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
mst-PB 574 CG1424-PB 2..574 1..573 3000 100 Plus
mst-PA 574 CG1424-PA 2..574 1..573 3000 100 Plus