Clone LD34893 Report

Search the DGRC for LD34893

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:348
Well:93
Vector:pOT2
Associated Gene/TranscriptCG10915-RA
Protein status:LD34893.pep: gold
Preliminary Size:2307
Sequenced Size:2848

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10915 2001-01-01 Release 2 assignment
CG10915 2002-03-19 Blastp of sequenced clone
CG10915 2003-01-01 Sim4 clustering to Release 3
CG10915 2008-04-29 Release 5.5 accounting
CG10915 2008-08-15 Release 5.9 accounting
CG10915 2008-12-18 5.12 accounting

Clone Sequence Records

LD34893.complete Sequence

2848 bp (2848 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094820

> LD34893.complete
CGGCAGCACTGCCGCAAGTATCCACTTTTTCACGGGCAACAAATTGACAA
AGAAATTGTAAGATAATTTCCTGTGGCGATTGCTGCTTGCGCAAAGCCAC
TTGCCTTGAAAGCGGGCTTAAACAGAGTCCGGGCCAGAAGTTAAATATTG
CAGAGAGCTTGCATACCGTGTAATTTGCGAACTGCGACGCACCAAACTTT
TTTTTTTGTATGCCGTGAGCTGAGCGGAGGTGGAGATCGGGAGTTCGGAA
TCCGGAATCGGGAATTGGGCATTGGATATCGGGACGGGAGCCACACGAAA
GAGTCGGCGGCAATGGAGCAGAACTCGAACAGCAGCGTTGCGGATACGTT
TGCGGAGGCACCAGCGACGGACGCGGATTACGGCACTGAGAACTGTTCCG
GATCCGGAATGTCGGTCGGCGACACCGTGAGCGCCAACCACGAGTTCCAG
ACCATGAAACCGGGTCCCGGTGTGGTGCACAAGGTGATGCCGGTGGCAAA
TAGCGCCAGCAGTGCTACCGCAACCAACGGACGCACGCGCTCCGAGATGC
CGCACAGCGAGCTGGTGAAGATGCTGTACTACCTGGAGGGCGAGCTGCAG
GCACGGGATGTCTGCATAGCCGCCCTGAGGAACGAGCGGGTAAAGCAGCT
CATTGCACAGCTGCGCACCAAGCGACTGCAGCCGAACGATCCGTATGCGG
CCATATTCCGGGACAAGATCGCACTCAATGGCAATCTGATATCAAGGGAA
TCGTCTACGCAGGCGGCGCAAGCGGAGATGGAGGTGCGCCAGATCATTGA
GCAGCAAATGGAGCAGCAGTATCAGATGGTTAGCAAGCAGAGGGCCACGC
ATGTGCGTATGGTCAACATATTGACCGAATCGCTGGAAAACAATCAGCGT
ATGCTCCAGGAGCTGGAGGAGGAGAAGCGCAAGCACGAGAACACCACGGC
TCAGGGTGACGACATCACCTACGGCCTGGAATTGGAGCGCAACAAGCTGA
AGCAGGACCTAGAGGAGGAGCGCGCTCAGGTGGCCAAAATGGAGAAGGAT
CTGAAGAAGCTGCAGGAGACGCTCGAGTACGAGCGCAATCGACAAAAGCA
GATTGTGCTGCTGTTGATTGCGGAGCGCAAAAAGATCCTCATGAAGTATA
TTGAAGAGGGGAAACGATCGGAGGATCTGGCCCAAATTCTGGCCGAGGAG
AAGCAGCGCTCGGATACCATTGCCGAGGGTCTCGAGGAGGAGAGCAAAAA
GTCGCTGCGCATGGAGGAGGAACTGGAGAAGCAAACGCATGCCATGGAGC
AGGAGCGTAAAGTCCTGTTTGCCAAACTAGCCAAGGAGGAACTCCGGGTC
AAGGAGCTGGAGCAGGAACTCAACGCCCTACGGAGCGAGCACGAGGCTCT
GAAAAAGCAGCAGCAACTGGGTGGCAGCGGCTCATCCGTGGCCGCCGCCA
AGGCGCGACAGTTCAGCGACGACGCCTGTGCCACGCCCCCCATGGTGAAC
ATCGCCAAGATCGTGCAGCCAACAGCCACGGTTAGCAGCATGCCGGTCTC
GGGACCACAGACCGGCATCGCCCGCTCCATTGCGCCGGGCCAGAACATCC
GGAGCGCTGGAATCGCAACGGCGCCCACGGGCACGGCCACAGCAGCAATA
GCACCACTAACTGCCGTGCTCAACCACACTACCACCATCACAACCACCAC
GAATAACACCACCACCAGCAGCAACAGCAACTCGAGCGGCAGCATTGGAG
TAGCAGCAACAGCTGCAGCAGTAGCTGCATCAGTTGAGACGGCTGCTACG
GTCACCGTGCCCATGGTGGCGCCACCCTCACCCTCTCCGGCAAAGATGCA
GCCGACGGCCACCATCCAGCGGGCGCCCGGCGGCAAGTATGCCGCACTGG
CTGCGGCAGCTGCCCTCGACCAGACAACAACACCGCATCCTCATCCCGTT
CCCATTGCCGTGCCGCCGGTTACGGTGCCGCCAGCGGGCGCTCGCGGAGC
ACCGCCCCCCATACCAACCAAGCCGATCGTGCCACCCAAGCGGGAGCCAT
CGCTCTCCCGGCTGGGCTCGATAACGGGCAGCAGTGCCATAGCGGCTGCC
ACCGCAGCCACCACGGCCGCGGGCACGGCGAAGCAGAATTAGACACCTAC
ACTCAGACTTACATTAATAACCGATATTGGGCGTAGCGATAAGCGAAATA
CTCAAGCGGCGTAGTCCCTCGGTGACCGCGCTGGGCAACAGGATCCTCCA
TCCCGAACTGACAACTTTCATGTTCTCTTGTCTTTAAAATGTTAAAATTT
TATGGTCGTACATGTCTTCATTTTTTTTTTGTTTATTGTGATTATTCAGT
TTAGATTGTAGCTTACAAAAGATTTCAATTTAAAAGTCTCTTTTATATAT
ACTTTGATATTTACTCATTTATACAATCGACTTCATTGTCAGTTCGAGAT
TGGAATCCTAAAAAGTAATCTAAAATCTTCTTAAAAGTGAAAAGGATGCG
ATTATTTGAGTATTTTCTGTTGCCTAGCGTGATTTGGCATACAAAACGTT
TAGGAGAGAAGTTTGTTAAGAATTAGAATGATAGTATACAGTGCGACTCC
CCCCCCAGGCGGCCTATCGTCTAAGTTTGGTTTAGTTTAGTTATTGTTTT
TTACCAAGCGAACGATACATTTTACAATGCCGTTGGCGGTCCGCGGGCCA
AGCCAAGAGACAAGCGACTTTAAATGTAATTCCGTACGTAGTAACCGAAC
ATTTGTACAAGGCCGTGCGATTCTCATAACAAGTAACAGCCACAATATAT
GATAATTATATACATACCCCACAGATAAAAAAAAAAAAAAAAAAAAAA

LD34893.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10915.a 3064 CG10915.a 65..2891 1..2827 14135 100 Plus
CG10915-RA 2910 CG10915-RA 65..2891 1..2827 14135 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14050000..14051358 1468..2826 6750 99.8 Plus
chr2R 21145070 chr2R 14047872..14049031 1..1160 5710 99.5 Plus
chr2R 21145070 chr2R 14049103..14049288 1162..1347 915 99.5 Plus
chr2R 21145070 chr2R 14049355..14049477 1346..1468 600 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18162851..18164210 1468..2827 6800 100 Plus
2R 25286936 2R 18160717..18161876 1..1160 5800 100 Plus
2R 25286936 2R 18161951..18162139 1159..1347 945 100 Plus
2R 25286936 2R 18162206..18162328 1346..1468 615 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18164050..18165409 1468..2827 6800 100 Plus
2R 25260384 2R 18161916..18163075 1..1160 5800 100 Plus
2R 25260384 2R 18163150..18163338 1159..1347 945 100 Plus
2R 25260384 2R 18163405..18163527 1346..1468 615 100 Plus
Blast to na_te.dros performed 2019-03-15 19:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 1544..1672 927..1055 122 60.2 Plus
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 375..438 1424..1486 119 67.2 Plus
1360 3409 1360 1360 3409bp 2938..3085 2427..2275 117 56.7 Minus

LD34893.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:40:09 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14047872..14049030 1..1159 99 -> Plus
chr2R 14049101..14049287 1160..1346 98 -> Plus
chr2R 14049356..14049477 1347..1468 99 -> Plus
chr2R 14050001..14050204 1469..1672 100 == Plus
chr2R 14050316..14051324 1784..2792 99 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:51 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
CG10915-RA 1..1830 313..2142 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:28:18 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
CG10915-RA 1..1830 313..2142 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:59:49 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
CG10915-RA 1..1830 313..2142 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:02:48 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
CG10915-RA 1..1830 313..2142 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:22 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
CG10915-RA 1..1830 313..2142 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:54:49 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
CG10915-RA 1..2826 1..2826 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:28:18 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
CG10915-RA 1..2826 1..2826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:49 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
CG10915-RA 1..2823 4..2826 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:02:48 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
CG10915-RA 1..2826 1..2826 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:22 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
CG10915-RA 1..2823 4..2826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:40:09 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18160717..18161875 1..1159 100 -> Plus
2R 18161952..18162138 1160..1346 100 -> Plus
2R 18162207..18162328 1347..1468 100 -> Plus
2R 18162852..18164209 1469..2826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:40:09 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18160717..18161875 1..1159 100 -> Plus
2R 18161952..18162138 1160..1346 100 -> Plus
2R 18162207..18162328 1347..1468 100 -> Plus
2R 18162852..18164209 1469..2826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:40:09 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18160717..18161875 1..1159 100 -> Plus
2R 18161952..18162138 1160..1346 100 -> Plus
2R 18162207..18162328 1347..1468 100 -> Plus
2R 18162852..18164209 1469..2826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:49 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14049712..14049833 1347..1468 100 -> Plus
arm_2R 14050357..14051714 1469..2826 100   Plus
arm_2R 14048222..14049380 1..1159 100 -> Plus
arm_2R 14049457..14049643 1160..1346 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:36:13 Download gff for LD34893.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18161916..18163074 1..1159 100 -> Plus
2R 18163151..18163337 1160..1346 100 -> Plus
2R 18163406..18163527 1347..1468 100 -> Plus
2R 18164051..18165408 1469..2826 100   Plus

LD34893.pep Sequence

Translation from 312 to 2141

> LD34893.pep
MEQNSNSSVADTFAEAPATDADYGTENCSGSGMSVGDTVSANHEFQTMKP
GPGVVHKVMPVANSASSATATNGRTRSEMPHSELVKMLYYLEGELQARDV
CIAALRNERVKQLIAQLRTKRLQPNDPYAAIFRDKIALNGNLISRESSTQ
AAQAEMEVRQIIEQQMEQQYQMVSKQRATHVRMVNILTESLENNQRMLQE
LEEEKRKHENTTAQGDDITYGLELERNKLKQDLEEERAQVAKMEKDLKKL
QETLEYERNRQKQIVLLLIAERKKILMKYIEEGKRSEDLAQILAEEKQRS
DTIAEGLEEESKKSLRMEEELEKQTHAMEQERKVLFAKLAKEELRVKELE
QELNALRSEHEALKKQQQLGGSGSSVAAAKARQFSDDACATPPMVNIAKI
VQPTATVSSMPVSGPQTGIARSIAPGQNIRSAGIATAPTGTATAAIAPLT
AVLNHTTTITTTTNNTTTSSNSNSSGSIGVAATAAAVAASVETAATVTVP
MVAPPSPSPAKMQPTATIQRAPGGKYAALAAAAALDQTTTPHPHPVPIAV
PPVTVPPAGARGAPPPIPTKPIVPPKREPSLSRLGSITGSSAIAAATAAT
TAAGTAKQN*

LD34893.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12655-PA 614 GF12655-PA 1..585 1..590 2127 81.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21849-PA 605 GG21849-PA 1..605 1..609 3060 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21056-PA 626 GH21056-PA 1..573 1..588 1974 73.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10915-PB 609 CG10915-PB 1..609 1..609 3019 100 Plus
CG10915-PA 609 CG10915-PA 1..609 1..609 3019 100 Plus
rgn-PD 800 CG6014-PD 446..726 108..382 169 26.7 Plus
rgn-PA 800 CG6014-PA 446..726 108..382 169 26.7 Plus
rgn-PC 808 CG6014-PC 454..734 108..382 169 26.7 Plus
rgn-PB 808 CG6014-PB 454..734 108..382 169 26.7 Plus
zip-PH 1964 CG15792-PH 860..1090 142..366 168 25.1 Plus
zip-PG 1971 CG15792-PG 852..1082 142..366 168 25.1 Plus
zip-PE 1971 CG15792-PE 852..1082 142..366 168 25.1 Plus
zip-PC 1971 CG15792-PC 852..1082 142..366 168 25.1 Plus
zip-PF 1979 CG15792-PF 860..1090 142..366 168 25.1 Plus
zip-PB 2011 CG15792-PB 892..1122 142..366 168 25.1 Plus
zip-PD 2016 CG15792-PD 897..1127 142..366 168 25.1 Plus
zip-PI 2024 CG15792-PI 905..1135 142..366 168 25.1 Plus
zip-PA 2056 CG15792-PA 937..1167 142..366 168 25.1 Plus
ph-p-PD 1346 CG18412-PD 517..1011 139..607 164 18.3 Plus
ph-p-PC 1346 CG18412-PC 517..1011 139..607 164 18.3 Plus
ph-p-PB 1346 CG18412-PB 517..1011 139..607 164 18.3 Plus
ph-p-PA 1589 CG18412-PA 760..1254 139..607 164 18.3 Plus
ph-d-PB 1359 CG3895-PB 557..1024 150..607 161 19.7 Plus
ph-d-PA 1537 CG3895-PA 735..1202 150..607 161 19.7 Plus
rudhira-PE 2075 CG43154-PE 1304..1707 1..426 161 20.7 Plus
rudhira-PC 2075 CG43154-PC 1304..1707 1..426 161 20.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18658-PA 613 GI18658-PA 1..567 1..588 1989 76.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11552-PA 593 GL11552-PA 1..562 1..595 2228 77.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10639-PA 605 GA10639-PA 1..574 1..595 2279 79.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21851-PA 609 GM21851-PA 1..609 1..609 3137 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11345-PA 609 GD11345-PA 1..609 1..609 3150 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21674-PA 608 GJ21674-PA 1..561 1..588 2028 76.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20978-PA 620 GK20978-PA 1..602 1..592 2079 76.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11928-PA 605 GE11928-PA 1..605 1..609 3029 95.4 Plus

LD34893.hyp Sequence

Translation from 312 to 2141

> LD34893.hyp
MEQNSNSSVADTFAEAPATDADYGTENCSGSGMSVGDTVSANHEFQTMKP
GPGVVHKVMPVANSASSATATNGRTRSEMPHSELVKMLYYLEGELQARDV
CIAALRNERVKQLIAQLRTKRLQPNDPYAAIFRDKIALNGNLISRESSTQ
AAQAEMEVRQIIEQQMEQQYQMVSKQRATHVRMVNILTESLENNQRMLQE
LEEEKRKHENTTAQGDDITYGLELERNKLKQDLEEERAQVAKMEKDLKKL
QETLEYERNRQKQIVLLLIAERKKILMKYIEEGKRSEDLAQILAEEKQRS
DTIAEGLEEESKKSLRMEEELEKQTHAMEQERKVLFAKLAKEELRVKELE
QELNALRSEHEALKKQQQLGGSGSSVAAAKARQFSDDACATPPMVNIAKI
VQPTATVSSMPVSGPQTGIARSIAPGQNIRSAGIATAPTGTATAAIAPLT
AVLNHTTTITTTTNNTTTSSNSNSSGSIGVAATAAAVAASVETAATVTVP
MVAPPSPSPAKMQPTATIQRAPGGKYAALAAAAALDQTTTPHPHPVPIAV
PPVTVPPAGARGAPPPIPTKPIVPPKREPSLSRLGSITGSSAIAAATAAT
TAAGTAKQN*

LD34893.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10915-PB 609 CG10915-PB 1..609 1..609 3019 100 Plus
CG10915-PA 609 CG10915-PA 1..609 1..609 3019 100 Plus
rgn-PD 800 CG6014-PD 446..726 108..382 169 26.7 Plus
rgn-PA 800 CG6014-PA 446..726 108..382 169 26.7 Plus
rgn-PC 808 CG6014-PC 454..734 108..382 169 26.7 Plus