Clone LD34980 Report

Search the DGRC for LD34980

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:349
Well:80
Vector:pOT2
Associated Gene/TranscriptAtg5-RA
Protein status:LD34980.pep: gold
Preliminary Size:1553
Sequenced Size:1432

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1643 2001-11-29 Blastp of sequenced clone
CG1643 2003-01-01 Sim4 clustering to Release 3
Atg5 2008-04-29 Release 5.5 accounting
Atg5 2008-08-15 Release 5.9 accounting
Atg5 2008-12-18 5.12 accounting

Clone Sequence Records

LD34980.complete Sequence

1432 bp (1432 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069596

> LD34980.complete
TAACATCGCAAATCGTATTGTGCAAAAAGGAAATATAATTTAGCCAAAAC
AAAAGCCAAATAAGGAACATGGCCCACGACCGCGAGGTGCTGCGAATGAT
CTGGGAGGGCCAGATAGGCATATGCTTCCAGGCGGATCGGGACGAGATCG
TGGGCATTAAGCCGGAGCCTTTCTATCTGATGATATCGCGACTCAGCTAC
TTGCCTTTGGTGACTGACAAGGTTCGCAAGTACTTCTCACGCTATATAAG
CGCCGAACACCAGGATGGAGCTGTGTGGTTCGACTTCAATGGAACGCCCC
TGCGACTTCACTATCCAATTGGTGTCCTATACGATCTGCTGCATCCGGAG
GAGGACAGCACGCCCTGGTGCCTCACCATTCACTTCTCCAAGTTCCCCGA
GGACATGCTCGTCAAGCTCAACTCCAAGGAGCTACTTGAATCGCACTACA
TGTCCTGCCTGAAGGAGGCAGATGTGCTTAAGCACCGCGGCCTGGTCATA
TCCGCTATGCAAAAGAAGGACCACAATCAGCTTTGGCTGGGATTGGTCAA
CGAAAAGTTCGATCAGTTCTGGGCCGTCAATCGGAGGCTAATGGAACCGT
ATGGCGATTTGGAGTCCTTCAAAAACATTCCCCTGCGAATCTATACAGAC
GATGACTTCACGTACACCCAGAAACTGATTTCACCGATCAGCGTGGGCGG
ACAAAAGAAGAGTTTGGCCGATTTAATGGCCGAATTATCGACACCTGTGC
GCAGAGCGGTTGGATGTCGCACGCACGGCATTGATCTACACGAGGAGACC
CAACTGCAATGGATGTCCGAGCATCTGAGCTATCCCGACAACTTTTTGCA
TTTATCGGTGGACTACAAGGATGTTTAGCCTTATCCCTATATGTATATAG
CCCTATGTTTTGCCCAGTTCGCGTGCGTGTATATTTATGTTTGTGTTCGT
GTCAATGTGTGCTTGTGAGAGTGTGTGCAGTTCTATTTTTCGATTCCAGC
AAATCCCAGGGCGATCCTCTGCGATCGATTTACATACATATATACGGATC
CATGTATATATCCAAATATATGTCTAGTTAAGCTAATCTGTATGCTATAT
TTATGATATATGCCAGCATTTAAAAGAAGCGAGCAGCGCAAACCAAACGA
TTAATGAAACTACCCACTAACTAATAATGCCAACATACAGTTAAACTTAA
CTTTTTTTTTTTTTTTGGATCATAATCTGCCGACTTTAGTTGCGAAAAAC
TTGATTGAAATTAAAGCACAGTTTTATTACGTTTATGTAATTATTTGATA
CACTAAAATGACATCACGCCACACTAATGATTAATGGAAACTATTTTATA
TCGACCCAATCAATATATATATATACGAAAGTTATAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD34980.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-RA 1593 Atg5-RA 199..1590 1..1389 6890 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7206553..7207182 1385..759 3070 99.5 Minus
chrX 22417052 chrX 7214487..7214713 654..428 1135 100 Minus
chrX 22417052 chrX 7215449..7215671 223..1 1115 100 Minus
chrX 22417052 chrX 7215088..7215195 428..321 540 100 Minus
chrX 22417052 chrX 7214298..7214403 759..654 530 100 Minus
chrX 22417052 chrX 7215274..7215378 324..220 525 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7314618..7315251 1389..759 3090 99.5 Minus
X 23542271 X 7322556..7322782 654..428 1135 100 Minus
X 23542271 X 7323518..7323740 223..1 1115 100 Minus
X 23542271 X 7323157..7323264 428..321 540 100 Minus
X 23542271 X 7322367..7322472 759..654 530 100 Minus
X 23542271 X 7323343..7323447 324..220 525 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7322716..7323349 1389..759 3100 99.5 Minus
X 23527363 X 7330654..7330880 654..428 1135 100 Minus
X 23527363 X 7331616..7331838 223..1 1115 100 Minus
X 23527363 X 7331255..7331362 428..321 540 100 Minus
X 23527363 X 7330465..7330570 759..654 530 100 Minus
X 23527363 X 7331441..7331545 324..220 525 100 Minus
Blast to na_te.dros performed 2019-03-16 01:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 424..473 1031..1080 124 72 Plus

LD34980.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:18:31 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7215277..7215376 222..321 100 <- Minus
chrX 7215451..7215671 1..221 100   Minus
chrX 7206553..7207181 760..1385 99 <- Minus
chrX 7214298..7214403 654..759 100 <- Minus
chrX 7214488..7214713 428..653 100 <- Minus
chrX 7215089..7215194 322..427 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:16:54 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 1..810 69..878 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:26:30 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 1..810 69..878 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:56 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 1..810 69..878 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:53:54 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 1..810 69..878 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:30:03 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 1..810 69..878 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:02:56 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 1..1388 1..1385 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:26:29 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 26..1413 1..1385 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:56 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 31..1418 1..1385 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:53:54 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 1..1388 1..1385 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:30:03 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 31..1418 1..1385 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:31 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
X 7314622..7315250 760..1385 99 <- Minus
X 7322367..7322472 654..759 100 <- Minus
X 7322557..7322782 428..653 100 <- Minus
X 7323158..7323263 322..427 100 <- Minus
X 7323346..7323445 222..321 100 <- Minus
X 7323520..7323740 1..221 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:31 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
X 7314622..7315250 760..1385 99 <- Minus
X 7322367..7322472 654..759 100 <- Minus
X 7322557..7322782 428..653 100 <- Minus
X 7323158..7323263 322..427 100 <- Minus
X 7323346..7323445 222..321 100 <- Minus
X 7323520..7323740 1..221 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:31 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
X 7314622..7315250 760..1385 99 <- Minus
X 7322367..7322472 654..759 100 <- Minus
X 7322557..7322782 428..653 100 <- Minus
X 7323158..7323263 322..427 100 <- Minus
X 7323346..7323445 222..321 100 <- Minus
X 7323520..7323740 1..221 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:56 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7217553..7217773 1..221 100   Minus
arm_X 7208655..7209283 760..1385 99 <- Minus
arm_X 7216400..7216505 654..759 100 <- Minus
arm_X 7216590..7216815 428..653 100 <- Minus
arm_X 7217191..7217296 322..427 100 <- Minus
arm_X 7217379..7217478 222..321 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:29:59 Download gff for LD34980.complete
Subject Subject Range Query Range Percent Splice Strand
X 7322720..7323348 760..1385 99 <- Minus
X 7330465..7330570 654..759 100 <- Minus
X 7330655..7330880 428..653 100 <- Minus
X 7331256..7331361 322..427 100 <- Minus
X 7331444..7331543 222..321 100 <- Minus
X 7331618..7331838 1..221 100   Minus

LD34980.hyp Sequence

Translation from 68 to 877

> LD34980.hyp
MAHDREVLRMIWEGQIGICFQADRDEIVGIKPEPFYLMISRLSYLPLVTD
KVRKYFSRYISAEHQDGAVWFDFNGTPLRLHYPIGVLYDLLHPEEDSTPW
CLTIHFSKFPEDMLVKLNSKELLESHYMSCLKEADVLKHRGLVISAMQKK
DHNQLWLGLVNEKFDQFWAVNRRLMEPYGDLESFKNIPLRIYTDDDFTYT
QKLISPISVGGQKKSLADLMAELSTPVRRAVGCRTHGIDLHEETQLQWMS
EHLSYPDNFLHLSVDYKDV*

LD34980.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-PA 269 CG1643-PA 1..269 1..269 1444 100 Plus

LD34980.pep Sequence

Translation from 68 to 877

> LD34980.pep
MAHDREVLRMIWEGQIGICFQADRDEIVGIKPEPFYLMISRLSYLPLVTD
KVRKYFSRYISAEHQDGAVWFDFNGTPLRLHYPIGVLYDLLHPEEDSTPW
CLTIHFSKFPEDMLVKLNSKELLESHYMSCLKEADVLKHRGLVISAMQKK
DHNQLWLGLVNEKFDQFWAVNRRLMEPYGDLESFKNIPLRIYTDDDFTYT
QKLISPISVGGQKKSLADLMAELSTPVRRAVGCRTHGIDLHEETQLQWMS
EHLSYPDNFLHLSVDYKDV*

LD34980.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Atg5-PA 269 GF21135-PA 1..267 1..267 1372 94.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\Atg5-PA 269 GG17627-PA 1..269 1..269 1404 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\Atg5-PA 269 GH24698-PA 1..268 1..268 1311 88.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-PA 269 CG1643-PA 1..269 1..269 1444 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14665-PA 269 GI14665-PA 1..266 1..266 1285 86.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\Atg5-PA 269 GL14628-PA 1..269 1..269 1342 91.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Atg5-PA 269 GA14069-PA 1..269 1..269 1342 91.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17472-PA 269 GM17472-PA 1..269 1..269 1436 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Atg5-PA 269 GD16157-PA 1..269 1..269 1436 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Atg5-PA 269 GJ14738-PA 1..269 1..269 1303 87 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16474-PA 269 GK16474-PA 1..269 1..269 1367 92.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Atg5-PA 269 GE17530-PA 1..269 1..269 1410 97 Plus