BDGP Sequence Production Resources |
Search the DGRC for LD34980
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 349 |
Well: | 80 |
Vector: | pOT2 |
Associated Gene/Transcript | Atg5-RA |
Protein status: | LD34980.pep: gold |
Preliminary Size: | 1553 |
Sequenced Size: | 1432 |
Gene | Date | Evidence |
---|---|---|
CG1643 | 2001-11-29 | Blastp of sequenced clone |
CG1643 | 2003-01-01 | Sim4 clustering to Release 3 |
Atg5 | 2008-04-29 | Release 5.5 accounting |
Atg5 | 2008-08-15 | Release 5.9 accounting |
Atg5 | 2008-12-18 | 5.12 accounting |
1432 bp (1432 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069596
> LD34980.complete TAACATCGCAAATCGTATTGTGCAAAAAGGAAATATAATTTAGCCAAAAC AAAAGCCAAATAAGGAACATGGCCCACGACCGCGAGGTGCTGCGAATGAT CTGGGAGGGCCAGATAGGCATATGCTTCCAGGCGGATCGGGACGAGATCG TGGGCATTAAGCCGGAGCCTTTCTATCTGATGATATCGCGACTCAGCTAC TTGCCTTTGGTGACTGACAAGGTTCGCAAGTACTTCTCACGCTATATAAG CGCCGAACACCAGGATGGAGCTGTGTGGTTCGACTTCAATGGAACGCCCC TGCGACTTCACTATCCAATTGGTGTCCTATACGATCTGCTGCATCCGGAG GAGGACAGCACGCCCTGGTGCCTCACCATTCACTTCTCCAAGTTCCCCGA GGACATGCTCGTCAAGCTCAACTCCAAGGAGCTACTTGAATCGCACTACA TGTCCTGCCTGAAGGAGGCAGATGTGCTTAAGCACCGCGGCCTGGTCATA TCCGCTATGCAAAAGAAGGACCACAATCAGCTTTGGCTGGGATTGGTCAA CGAAAAGTTCGATCAGTTCTGGGCCGTCAATCGGAGGCTAATGGAACCGT ATGGCGATTTGGAGTCCTTCAAAAACATTCCCCTGCGAATCTATACAGAC GATGACTTCACGTACACCCAGAAACTGATTTCACCGATCAGCGTGGGCGG ACAAAAGAAGAGTTTGGCCGATTTAATGGCCGAATTATCGACACCTGTGC GCAGAGCGGTTGGATGTCGCACGCACGGCATTGATCTACACGAGGAGACC CAACTGCAATGGATGTCCGAGCATCTGAGCTATCCCGACAACTTTTTGCA TTTATCGGTGGACTACAAGGATGTTTAGCCTTATCCCTATATGTATATAG CCCTATGTTTTGCCCAGTTCGCGTGCGTGTATATTTATGTTTGTGTTCGT GTCAATGTGTGCTTGTGAGAGTGTGTGCAGTTCTATTTTTCGATTCCAGC AAATCCCAGGGCGATCCTCTGCGATCGATTTACATACATATATACGGATC CATGTATATATCCAAATATATGTCTAGTTAAGCTAATCTGTATGCTATAT TTATGATATATGCCAGCATTTAAAAGAAGCGAGCAGCGCAAACCAAACGA TTAATGAAACTACCCACTAACTAATAATGCCAACATACAGTTAAACTTAA CTTTTTTTTTTTTTTTGGATCATAATCTGCCGACTTTAGTTGCGAAAAAC TTGATTGAAATTAAAGCACAGTTTTATTACGTTTATGTAATTATTTGATA CACTAAAATGACATCACGCCACACTAATGATTAATGGAAACTATTTTATA TCGACCCAATCAATATATATATATACGAAAGTTATAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg5-RA | 1593 | Atg5-RA | 199..1590 | 1..1389 | 6890 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 7206553..7207182 | 1385..759 | 3070 | 99.5 | Minus |
chrX | 22417052 | chrX | 7214487..7214713 | 654..428 | 1135 | 100 | Minus |
chrX | 22417052 | chrX | 7215449..7215671 | 223..1 | 1115 | 100 | Minus |
chrX | 22417052 | chrX | 7215088..7215195 | 428..321 | 540 | 100 | Minus |
chrX | 22417052 | chrX | 7214298..7214403 | 759..654 | 530 | 100 | Minus |
chrX | 22417052 | chrX | 7215274..7215378 | 324..220 | 525 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 7314618..7315251 | 1389..759 | 3090 | 99.5 | Minus |
X | 23542271 | X | 7322556..7322782 | 654..428 | 1135 | 100 | Minus |
X | 23542271 | X | 7323518..7323740 | 223..1 | 1115 | 100 | Minus |
X | 23542271 | X | 7323157..7323264 | 428..321 | 540 | 100 | Minus |
X | 23542271 | X | 7322367..7322472 | 759..654 | 530 | 100 | Minus |
X | 23542271 | X | 7323343..7323447 | 324..220 | 525 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 7322716..7323349 | 1389..759 | 3100 | 99.5 | Minus |
X | 23527363 | X | 7330654..7330880 | 654..428 | 1135 | 100 | Minus |
X | 23527363 | X | 7331616..7331838 | 223..1 | 1115 | 100 | Minus |
X | 23527363 | X | 7331255..7331362 | 428..321 | 540 | 100 | Minus |
X | 23527363 | X | 7330465..7330570 | 759..654 | 530 | 100 | Minus |
X | 23527363 | X | 7331441..7331545 | 324..220 | 525 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\Kepler | 722 | Dbuz\Kepler KEPLER 722bp | 424..473 | 1031..1080 | 124 | 72 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 7215277..7215376 | 222..321 | 100 | <- | Minus |
chrX | 7215451..7215671 | 1..221 | 100 | Minus | |
chrX | 7206553..7207181 | 760..1385 | 99 | <- | Minus |
chrX | 7214298..7214403 | 654..759 | 100 | <- | Minus |
chrX | 7214488..7214713 | 428..653 | 100 | <- | Minus |
chrX | 7215089..7215194 | 322..427 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg5-RA | 1..810 | 69..878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg5-RA | 1..810 | 69..878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg5-RA | 1..810 | 69..878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg5-RA | 1..810 | 69..878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg5-RA | 1..810 | 69..878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg5-RA | 1..1388 | 1..1385 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg5-RA | 26..1413 | 1..1385 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg5-RA | 31..1418 | 1..1385 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg5-RA | 1..1388 | 1..1385 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg5-RA | 31..1418 | 1..1385 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7314622..7315250 | 760..1385 | 99 | <- | Minus |
X | 7322367..7322472 | 654..759 | 100 | <- | Minus |
X | 7322557..7322782 | 428..653 | 100 | <- | Minus |
X | 7323158..7323263 | 322..427 | 100 | <- | Minus |
X | 7323346..7323445 | 222..321 | 100 | <- | Minus |
X | 7323520..7323740 | 1..221 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7314622..7315250 | 760..1385 | 99 | <- | Minus |
X | 7322367..7322472 | 654..759 | 100 | <- | Minus |
X | 7322557..7322782 | 428..653 | 100 | <- | Minus |
X | 7323158..7323263 | 322..427 | 100 | <- | Minus |
X | 7323346..7323445 | 222..321 | 100 | <- | Minus |
X | 7323520..7323740 | 1..221 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7314622..7315250 | 760..1385 | 99 | <- | Minus |
X | 7322367..7322472 | 654..759 | 100 | <- | Minus |
X | 7322557..7322782 | 428..653 | 100 | <- | Minus |
X | 7323158..7323263 | 322..427 | 100 | <- | Minus |
X | 7323346..7323445 | 222..321 | 100 | <- | Minus |
X | 7323520..7323740 | 1..221 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 7217553..7217773 | 1..221 | 100 | Minus | |
arm_X | 7208655..7209283 | 760..1385 | 99 | <- | Minus |
arm_X | 7216400..7216505 | 654..759 | 100 | <- | Minus |
arm_X | 7216590..7216815 | 428..653 | 100 | <- | Minus |
arm_X | 7217191..7217296 | 322..427 | 100 | <- | Minus |
arm_X | 7217379..7217478 | 222..321 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7322720..7323348 | 760..1385 | 99 | <- | Minus |
X | 7330465..7330570 | 654..759 | 100 | <- | Minus |
X | 7330655..7330880 | 428..653 | 100 | <- | Minus |
X | 7331256..7331361 | 322..427 | 100 | <- | Minus |
X | 7331444..7331543 | 222..321 | 100 | <- | Minus |
X | 7331618..7331838 | 1..221 | 100 | Minus |
Translation from 68 to 877
> LD34980.hyp MAHDREVLRMIWEGQIGICFQADRDEIVGIKPEPFYLMISRLSYLPLVTD KVRKYFSRYISAEHQDGAVWFDFNGTPLRLHYPIGVLYDLLHPEEDSTPW CLTIHFSKFPEDMLVKLNSKELLESHYMSCLKEADVLKHRGLVISAMQKK DHNQLWLGLVNEKFDQFWAVNRRLMEPYGDLESFKNIPLRIYTDDDFTYT QKLISPISVGGQKKSLADLMAELSTPVRRAVGCRTHGIDLHEETQLQWMS EHLSYPDNFLHLSVDYKDV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg5-PA | 269 | CG1643-PA | 1..269 | 1..269 | 1444 | 100 | Plus |
Translation from 68 to 877
> LD34980.pep MAHDREVLRMIWEGQIGICFQADRDEIVGIKPEPFYLMISRLSYLPLVTD KVRKYFSRYISAEHQDGAVWFDFNGTPLRLHYPIGVLYDLLHPEEDSTPW CLTIHFSKFPEDMLVKLNSKELLESHYMSCLKEADVLKHRGLVISAMQKK DHNQLWLGLVNEKFDQFWAVNRRLMEPYGDLESFKNIPLRIYTDDDFTYT QKLISPISVGGQKKSLADLMAELSTPVRRAVGCRTHGIDLHEETQLQWMS EHLSYPDNFLHLSVDYKDV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\Atg5-PA | 269 | GF21135-PA | 1..267 | 1..267 | 1372 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\Atg5-PA | 269 | GG17627-PA | 1..269 | 1..269 | 1404 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\Atg5-PA | 269 | GH24698-PA | 1..268 | 1..268 | 1311 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg5-PA | 269 | CG1643-PA | 1..269 | 1..269 | 1444 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14665-PA | 269 | GI14665-PA | 1..266 | 1..266 | 1285 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\Atg5-PA | 269 | GL14628-PA | 1..269 | 1..269 | 1342 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Atg5-PA | 269 | GA14069-PA | 1..269 | 1..269 | 1342 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17472-PA | 269 | GM17472-PA | 1..269 | 1..269 | 1436 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Atg5-PA | 269 | GD16157-PA | 1..269 | 1..269 | 1436 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Atg5-PA | 269 | GJ14738-PA | 1..269 | 1..269 | 1303 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16474-PA | 269 | GK16474-PA | 1..269 | 1..269 | 1367 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Atg5-PA | 269 | GE17530-PA | 1..269 | 1..269 | 1410 | 97 | Plus |