Clone LD35051 Report

Search the DGRC for LD35051

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:350
Well:51
Vector:pOT2
Associated Gene/TranscriptCG31637-RA
Protein status:LD35051.pep: gold
Preliminary Size:2864
Sequenced Size:2583

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13765 2001-01-01 Release 2 assignment
CG9551 2001-01-01 Release 2 assignment
CG31637 2001-09-19 Blastp of sequenced clone
CG31637 2003-01-01 Sim4 clustering to Release 3
CG31637 2008-04-29 Release 5.5 accounting
CG31637 2008-08-15 Release 5.9 accounting
CG31637 2008-12-18 5.12 accounting

Clone Sequence Records

LD35051.complete Sequence

2583 bp (2583 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058647

> LD35051.complete
CATCGCGTCGCGGAAAATCGAGATATAAATACGGAAAACAAAGATATAAC
TCCGACGCGGCGACTTCCGCAGCAAGCAACTGCAATGCGCTCGAGTTGAG
GGCGCGCCGATAATTATGTGCGTGTGGGAGCGAGTGCGAGTATAGCACAC
AAGTGATCACCACCAGCAATTAGCAAGTGACCAACCGACCGACCAATGAG
CACGGGCATTGGCAGCAGCAGCAGCAGCACGGAGGAGCAGCAGCACCTGG
AACTGAGCGCGGACTTGGAGGCGTGCTCCCTGCTTGGCCCGCAGGACCCG
TCGAACGTCGATACCGGCAGGACACGCGCTAAGCAGCGACTCAGCTTGAA
CGGAAAGCGGCGCCGCAGCCGGATGTCGCGCAGGGCCAATCTGATCGGCA
TCTGCGGCGTGAGCAGCCTGTGCATCCTGCTGCTGATCGCCACCACCCAG
CACCGTCCGCTGACCACGCCGTTTAATCAGTCGGCTGGGCGGGATCAGGG
CGCGTCCGTAGATGGCGGTCCATCCAATTCGCTGGCGCGCAGCGCCTTCT
ACGATCGCTTCCAGCAGCAATTGCAGCAGCAGCAGCAGTCGTCGCAGACG
GCCGTCTACAATCTGACAGCTACTATAGTGGATGTCCTGTCGGCTCAACG
GTCGCGCATCCTGGCCGAAATGGAGAACTTCGAGTATCCGCGCGGCGGCG
CCGAGCGTCTGACGGACATGACGCCGGAGACGAACGGCACCCCGGTGCGC
AGTGTGGTGGTCACCTCATGGCGCTCCGGCTCCACCTTCCTGGGTGACAT
TCTCAACTCGATACCGGGCAACTTCTATCACTATGAGCCGCTGCTCGACT
TCGGCATCAAGCAGATCCGCGATCCTGACGATCAGGAGCTGGCCGTGCAG
AACCTGAAGAACCTGCTCAACTGCGACTACGCCGACATGATCGACTATCT
GAACTTCGGCAAGACGCACACCTATCTGTTCGAGCACAACACCCGACTGT
GGGACGTCTGCCGGGAGTTCCCGCGCTTCTGCTGGCGTCCAGCCTTCCTC
ACGCGCTTCTGCCGCCTCTTCCCCATCCAGAGCATGAAGACCGTCCGCCT
GCGACTCGCCCAGGCCGAAAAGCTGCTCGAGGACCAAAGTCTCTCCAGCG
TGCGGATCGTGCTGCTGGTGCGAGATCCACGAGGTACGATGCAGTCGAGG
CGACATCGAGTGTGGTGCGGAGGCAACGAGGACTGCGAGGATCCACGACT
GGTGTGCCAGGATCTGCGGGATGACTACAAGACAGCGGAGGTGCTGTTGC
TGAAATATCCGTCTCGTTTTAGGACTGTTCGTTATGAGGACCTATCCTTG
AGTCCCAGTGAGATGACCCAGGACATCTTGCAGTTCTATGGCTTGCCATT
TGATCCTGCAGTGGAGGAGTTTTTGGACACGCACACCAAGGTCAACATTG
GAGGTGTCAGTTCCACATATCGAGATTCCAGATCAGCGCCATTCCATTGG
ATGCAGGATCTCAAGCCAGAAGAGATCAAGCAAATCCAGGATGTCTGCAC
TGAAGCGATGGATTTGTGGGGCTATCGCCGCATCGAGAACTTCAACAACT
TCTCCACCACCCAGCAGACCTTCGATCCGATGGTTATGCCGCCACCGTTC
ACGTGAAGCGCTCCTAGTGCTGGCCGATCGTTTACGAGAAACTGATATGG
ATAACTAATTCTTCTACTTGGTACATTTTGATGTGATATCGTCGTGTTGA
GCGAGCAAAAAGAAATATGAAAAGAACGGAAGAAGGCAGCGAGATATAGA
CCGATTGGATGGAGCAACTGGGTGCATTGTGCATTGTGAAAAACTCATTC
ATAGCGGGCACATTTTTGCTACACACGCAGACACACTTAACTGAGCAATA
GTTCATAATATATGTAAACTGAATATACAATATGAAATGCATAATTTTAG
TAATTGGCGAATTTTTGTGTAGAGAGTAAAGCGGTACGAAAACCAGTCGA
ATATCAGATTTACATTTAGGCCTAGAACTTAAGCAAACAATAACTGAAAA
CTTAGTCTAAATAGGGCTGCGTATAGTGGAATGTTTACTTGGCTTTTTGA
TGTAAATTATTTAGGCAAACAACTTTTGTAATTTGGCTTAACAATGAAAT
CCAGTGATTTAGCATATAACAACCAAAACGTATCACAGAGATATTAATAA
AATACAACGTTTGAAATTAATCGAGATGCAATTATACAACAATGTTTGGC
AAACCAAAAACTGTGCAATATTATCAAATTGGAAAAACAATTAAATTACC
CTAGTATCAATTTAGACACAAATTTTCTAAAGAAAATTCAAATTATAAAA
ATGTATTAAGAAGAGCAATGGGCACTCAATTCCTACTCATAAGTTTCCTT
AGGCATAAATTATTTGTATGGTTATTTAGTTGTAATTGTAATTAAATTGT
ACTATACTTTATGTCCTTATTATATAAATGAGTTATGTTCGTTTTCTTTT
TCCGAAACGAAGCCCAGTTCATCGATAGATACGTTAAAGAGTAAATGGAT
GTTTAATAAACAAAAAAAAAAAAAAAAAAAAAA

LD35051.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31637-RA 2771 CG31637-RA 78..2642 1..2565 12825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6497665..6498803 1..1139 5650 99.7 Plus
chr2L 23010047 chr2L 6524856..6525894 1523..2561 5165 99.8 Plus
chr2L 23010047 chr2L 6524592..6524795 1321..1524 1020 100 Plus
chr2L 23010047 chr2L 6524341..6524526 1138..1323 930 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6498681..6499819 1..1139 5695 100 Plus
2L 23513712 2L 6525881..6526923 1523..2565 5215 100 Plus
2L 23513712 2L 6525617..6525820 1321..1524 1020 100 Plus
2L 23513712 2L 6525366..6525551 1138..1323 930 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6498681..6499819 1..1139 5695 100 Plus
2L 23513712 2L 6525881..6526923 1523..2565 5215 100 Plus
2L 23513712 2L 6525617..6525820 1321..1524 1020 100 Plus
2L 23513712 2L 6525366..6525551 1138..1323 930 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:53:37 has no hits.

LD35051.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:54:30 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6497665..6498803 1..1139 96 -> Plus
chr2L 6524343..6524525 1140..1322 100 -> Plus
chr2L 6524594..6524795 1323..1524 100 -> Plus
chr2L 6524858..6525894 1525..2561 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:33 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 1..1461 196..1656 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:35 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 1..1461 196..1656 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:58 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 1..1461 196..1656 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:23:59 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 1..1461 196..1656 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:07:27 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 40..2600 1..2561 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:33 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 40..2600 1..2561 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:35 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 35..2595 1..2561 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:58 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 40..2600 1..2561 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:23:59 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 35..2595 1..2561 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:30 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6498681..6499819 1..1139 100 -> Plus
2L 6525368..6525550 1140..1322 100 -> Plus
2L 6525619..6525820 1323..1524 100 -> Plus
2L 6525883..6526919 1525..2561 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:30 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6498681..6499819 1..1139 100 -> Plus
2L 6525368..6525550 1140..1322 100 -> Plus
2L 6525619..6525820 1323..1524 100 -> Plus
2L 6525883..6526919 1525..2561 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:30 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6498681..6499819 1..1139 100 -> Plus
2L 6525368..6525550 1140..1322 100 -> Plus
2L 6525619..6525820 1323..1524 100 -> Plus
2L 6525883..6526919 1525..2561 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:35 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6525619..6525820 1323..1524 100 -> Plus
arm_2L 6498681..6499819 1..1139 100 -> Plus
arm_2L 6525368..6525550 1140..1322 100 -> Plus
arm_2L 6525883..6526919 1525..2561 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:27 Download gff for LD35051.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6498681..6499819 1..1139 100 -> Plus
2L 6525368..6525550 1140..1322 100 -> Plus
2L 6525619..6525820 1323..1524 100 -> Plus
2L 6525883..6526919 1525..2561 100   Plus

LD35051.pep Sequence

Translation from 195 to 1655

> LD35051.pep
MSTGIGSSSSSTEEQQHLELSADLEACSLLGPQDPSNVDTGRTRAKQRLS
LNGKRRRSRMSRRANLIGICGVSSLCILLLIATTQHRPLTTPFNQSAGRD
QGASVDGGPSNSLARSAFYDRFQQQLQQQQQSSQTAVYNLTATIVDVLSA
QRSRILAEMENFEYPRGGAERLTDMTPETNGTPVRSVVVTSWRSGSTFLG
DILNSIPGNFYHYEPLLDFGIKQIRDPDDQELAVQNLKNLLNCDYADMID
YLNFGKTHTYLFEHNTRLWDVCREFPRFCWRPAFLTRFCRLFPIQSMKTV
RLRLAQAEKLLEDQSLSSVRIVLLVRDPRGTMQSRRHRVWCGGNEDCEDP
RLVCQDLRDDYKTAEVLLLKYPSRFRTVRYEDLSLSPSEMTQDILQFYGL
PFDPAVEEFLDTHTKVNIGGVSSTYRDSRSAPFHWMQDLKPEEIKQIQDV
CTEAMDLWGYRRIENFNNFSTTQQTFDPMVMPPPFT*

LD35051.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14169-PA 507 GF14169-PA 2..507 11..486 2115 84.5 Plus
Dana\GF14168-PA 364 GF14168-PA 54..361 172..480 536 36 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10418-PA 488 GG10418-PA 1..488 1..486 2505 95.7 Plus
Dere\GG10417-PA 362 GG10417-PA 54..359 172..480 491 35.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13654-PA 494 GH13654-PA 52..494 40..486 1864 80.7 Plus
Dgri\GH13652-PA 353 GH13652-PA 52..353 172..477 466 35.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31637-PB 486 CG31637-PB 1..486 1..486 2556 100 Plus
CG31637-PA 486 CG31637-PA 1..486 1..486 2556 100 Plus
CG9550-PA 363 CG9550-PA 54..359 172..480 500 35.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13660-PA 482 GI13660-PA 39..482 40..486 1844 78.5 Plus
Dmoj\GI13649-PA 360 GI13649-PA 43..358 150..485 484 34.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25675-PA 540 GL25675-PA 5..311 19..324 1172 79.8 Plus
Dper\GL25675-PA 540 GL25675-PA 370..540 316..486 856 89.5 Plus
Dper\GL25674-PA 364 GL25674-PA 54..360 172..479 507 35.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16353-PA 480 GA16353-PA 5..480 19..486 2072 85.2 Plus
Dpse\GA21872-PA 364 GA21872-PA 54..360 172..479 509 35.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18635-PA 433 GM18635-PA 1..314 1..314 1646 98.4 Plus
Dsec\GM16163-PA 190 GM16163-PA 14..190 310..486 935 97.2 Plus
Dsec\GM18634-PA 362 GM18634-PA 54..359 172..480 489 34.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23416-PA 485 GD23416-PA 1..485 1..486 2582 99.2 Plus
Dsim\GD23415-PA 362 GD23415-PA 54..359 172..480 469 34.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18338-PA 494 GJ18338-PA 7..494 23..486 1866 74.4 Plus
Dvir\GJ18337-PA 355 GJ18337-PA 52..353 172..485 461 35.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18727-PA 473 GK18727-PA 5..472 19..485 1908 77.6 Plus
Dwil\GK18726-PA 335 GK18726-PA 54..335 172..444 440 35.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13933-PA 488 GE13933-PA 1..488 1..486 2499 95.7 Plus
Dyak\GE13922-PA 362 GE13922-PA 27..359 138..480 485 34.2 Plus

LD35051.hyp Sequence

Translation from 195 to 1655

> LD35051.hyp
MSTGIGSSSSSTEEQQHLELSADLEACSLLGPQDPSNVDTGRTRAKQRLS
LNGKRRRSRMSRRANLIGICGVSSLCILLLIATTQHRPLTTPFNQSAGRD
QGASVDGGPSNSLARSAFYDRFQQQLQQQQQSSQTAVYNLTATIVDVLSA
QRSRILAEMENFEYPRGGAERLTDMTPETNGTPVRSVVVTSWRSGSTFLG
DILNSIPGNFYHYEPLLDFGIKQIRDPDDQELAVQNLKNLLNCDYADMID
YLNFGKTHTYLFEHNTRLWDVCREFPRFCWRPAFLTRFCRLFPIQSMKTV
RLRLAQAEKLLEDQSLSSVRIVLLVRDPRGTMQSRRHRVWCGGNEDCEDP
RLVCQDLRDDYKTAEVLLLKYPSRFRTVRYEDLSLSPSEMTQDILQFYGL
PFDPAVEEFLDTHTKVNIGGVSSTYRDSRSAPFHWMQDLKPEEIKQIQDV
CTEAMDLWGYRRIENFNNFSTTQQTFDPMVMPPPFT*

LD35051.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31637-PB 486 CG31637-PB 1..486 1..486 2556 100 Plus
CG31637-PA 486 CG31637-PA 1..486 1..486 2556 100 Plus
CG9550-PA 363 CG9550-PA 54..359 172..480 500 35.4 Plus