Clone LD35087 Report

Search the DGRC for LD35087

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:350
Well:87
Vector:pOT2
Associated Gene/TranscriptCG14232-RA
Protein status:LD35087.pep: gold
Preliminary Size:1753
Sequenced Size:1779

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14232 2001-01-01 Release 2 assignment
CG14232 2001-07-04 Blastp of sequenced clone
CG14232 2003-01-01 Sim4 clustering to Release 3
CG14232 2008-04-29 Release 5.5 accounting
CG14232 2008-08-15 Release 5.9 accounting
CG14232 2008-12-18 5.12 accounting

Clone Sequence Records

LD35087.complete Sequence

1779 bp (1779 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051848

> LD35087.complete
CGAAAAGTTTGCAGGCCAGCAATCGTGGACTAGCCCACAAACAACGGCAG
CATGGCGAGCGGGACAAGCGGCACAAGCAGCAGTGAAACGGCCCAGTCGA
CGGACATGGCACCATCATCGGCCGAGAAGTGGGGCTTCCCTTTGATTGAG
CTCTACCGCCTGGCATTCACGTTCTACAAGCGGAACTCCGGCAAGGCCAT
CCACTTGTCGTACGAGGACAACCTCAAGCTGATCGCCTTCAAGCAGCAGG
CGGCGCTGGGCCCCTTCAACACGAGTCGCGCCCCGGCGCTGGGCGTCCTG
GACGTGATCGGACGCGACCGGCAGCAGCACTGGCAGCTGCTCGGTGAGAT
AACGCGCGAGCAGGCGATGGAGGGGTTCGTCGACCTGCTGGACACAATGT
GCAGCGCCTTTCGGCCGTACATTGAGGCCGTGCGGCAGGACCGCGACGAG
ACGCTGCGCAAGGAGCTGCGCCTCATGGAGGAGAAGAAGGAGGCACGCGA
GCGGCAGGAGAACGCCCAGCAGGAGCTGCTCGAGGAGGGTTACAAGGAGG
AGCTGCAGCGCCGCCAGCTGCAGGACGCACTCAACAAGCAGACTTACCAG
CAGTTTAAGCTGTACGCTGAGAAGCAGTTCCCCGGAAACCCCGAACAGCA
GGCCGTGCTTATCCACCAGCTGCAGCGGGAGCACTATCACCAGTACATGC
AACAGCTTCATCTGCAGAACCAGAACCAGAATCAGAATCAGAACACGGAG
GACAAGGGACACCAGGAAGCAGAACACGTCCCTGGCAATAACAACAACAG
CTCAACCGACTTGCCCAACGCCATGGAGGGACTGAAGCTCGGTGAGGTCG
AGACACAGCAGCACCAGCAGCTGGCCGAGCAGCAAGACGGGCATGTAGAG
CAGACGTTGGAGGGCGTTGGGCAGGAACAGCACGGCGAGGAAGAGTACGA
CGACTACGTTATGATCTGCCCGGCCAAGATCTGGACTCGTCCCGACATCG
AGCAGTTTAAGACTGAGGTGTCCGCCGGCGATGGGGACGGCGTCATCACC
ATTGGACACGGCGACACGGTGACGGTCCGTGTGCCCACCAACATGAACGG
CAAGTGCATCTTCTGGGAGTTCGCCACGGACAGCTACGACATCGGCTTCG
GCATCTACTTCGAGTGGGCCAAGCCCGTGACCAACGAGGTGACCGTGCAT
GTGAGCGACTCCGACGAGGACGAGGATTGCGTGGACGAGGACTACCTATC
CACCACCGAGGACCTGGAGTCCGGCTCGCTGTCGCAGGAGCGCGGCGCAG
TTAACAACCCGACTGCTGCCCCCAAGGCACCCATTTCCATTATCGTACCG
ATCTATCGACGGGAGTGCTACAACGAGGTCTACGTGGGCTCCCACTCCTA
TCCGGGCGAGGGCGTCTATTTGCTGAAGTTCGACAACAGCTACAGCATCT
GGCGCAATAAGACGCTGTACTACCGCGTCTACTACGAGCGTTAAGAGGCC
AAAATGTATTTACTTACCACTAACTTAGATGAATCCTATCTCCGTACGAA
CGGCTAATGTGCAAGTCCGGAATAATCTGTATGTGCGTGTGCGTGAGGTT
TTGGTTTTACGTGTGCGTTGCTGCAATTCCGGGAAACAAGCGGCGGGAAA
AGACCATGCCGATTTCAGACTAAACCAATATTATTTATTATTTAGTTGTA
ACCGACGAAGACAAGTCCAAAATTCAATTTGAAACTAATAAACAATATAA
AGACAACTGTAAAAAAAAAAAAAAAAAAA

LD35087.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-RA 1956 CG14232-RA 90..1852 1..1763 8815 100 Plus
CG14232.a 1981 CG14232.a 120..1877 6..1763 8790 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19590765..19591451 1760..1074 3390 99.6 Minus
chrX 22417052 chrX 19591508..19591976 1076..608 2330 99.8 Minus
chrX 22417052 chrX 19592180..19592607 609..182 2125 99.8 Minus
chrX 22417052 chrX 19592665..19592846 182..1 910 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19701985..19702674 1763..1074 3450 100 Minus
X 23542271 X 19702731..19703199 1076..608 2345 100 Minus
X 23542271 X 19703403..19703830 609..182 2140 100 Minus
X 23542271 X 19703888..19704069 182..1 910 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19710083..19710772 1763..1074 3450 100 Minus
X 23527363 X 19710829..19711297 1076..608 2345 100 Minus
X 23527363 X 19711501..19711928 609..182 2140 100 Minus
X 23527363 X 19711986..19712167 182..1 910 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:18:02 has no hits.

LD35087.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:18:47 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19591510..19591974 610..1074 99 <- Minus
chrX 19590765..19591450 1075..1760 99 <- Minus
chrX 19592180..19592607 182..609 99 <- Minus
chrX 19592666..19592846 1..181 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:07 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 1..1443 52..1494 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:18:23 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 1..1443 52..1494 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:05:03 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 1..1443 52..1494 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:57 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 1..1443 52..1494 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:30:45 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 1..1443 52..1494 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:13:36 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 77..1836 1..1760 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:18:23 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 77..1836 1..1760 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:05:03 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 85..1844 1..1760 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:57 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 77..1836 1..1760 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:30:45 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 85..1844 1..1760 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:47 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
X 19701988..19702673 1075..1760 100 <- Minus
X 19702733..19703197 610..1074 100 <- Minus
X 19703403..19703830 182..609 100 <- Minus
X 19703889..19704069 1..181 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:47 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
X 19701988..19702673 1075..1760 100 <- Minus
X 19702733..19703197 610..1074 100 <- Minus
X 19703403..19703830 182..609 100 <- Minus
X 19703889..19704069 1..181 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:47 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
X 19701988..19702673 1075..1760 100 <- Minus
X 19702733..19703197 610..1074 100 <- Minus
X 19703403..19703830 182..609 100 <- Minus
X 19703889..19704069 1..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:03 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19596021..19596706 1075..1760 100 <- Minus
arm_X 19596766..19597230 610..1074 100 <- Minus
arm_X 19597436..19597863 182..609 100 <- Minus
arm_X 19597922..19598102 1..181 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:28:11 Download gff for LD35087.complete
Subject Subject Range Query Range Percent Splice Strand
X 19711987..19712167 1..181 100   Minus
X 19710086..19710771 1075..1760 100 <- Minus
X 19710831..19711295 610..1074 100 <- Minus
X 19711501..19711928 182..609 100 <- Minus

LD35087.pep Sequence

Translation from 51 to 1493

> LD35087.pep
MASGTSGTSSSETAQSTDMAPSSAEKWGFPLIELYRLAFTFYKRNSGKAI
HLSYEDNLKLIAFKQQAALGPFNTSRAPALGVLDVIGRDRQQHWQLLGEI
TREQAMEGFVDLLDTMCSAFRPYIEAVRQDRDETLRKELRLMEEKKEARE
RQENAQQELLEEGYKEELQRRQLQDALNKQTYQQFKLYAEKQFPGNPEQQ
AVLIHQLQREHYHQYMQQLHLQNQNQNQNQNTEDKGHQEAEHVPGNNNNS
STDLPNAMEGLKLGEVETQQHQQLAEQQDGHVEQTLEGVGQEQHGEEEYD
DYVMICPAKIWTRPDIEQFKTEVSAGDGDGVITIGHGDTVTVRVPTNMNG
KCIFWEFATDSYDIGFGIYFEWAKPVTNEVTVHVSDSDEDEDCVDEDYLS
TTEDLESGSLSQERGAVNNPTAAPKAPISIIVPIYRRECYNEVYVGSHSY
PGEGVYLLKFDNSYSIWRNKTLYYRVYYER*

LD35087.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20468-PA 483 GF20468-PA 19..483 20..480 1877 85.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18028-PA 472 GG18028-PA 1..472 1..480 2147 92.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12255-PA 498 GH12255-PA 5..498 16..480 1746 75.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-PB 480 CG14232-PB 1..480 1..480 2541 100 Plus
CG14232-PA 480 CG14232-PA 1..480 1..480 2541 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11015-PA 460 GI11015-PA 8..460 20..480 1758 78 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18304-PA 486 GL18304-PA 3..486 6..480 1896 80.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12845-PA 488 GA12845-PA 3..488 6..480 1896 80.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22712-PA 476 GM22712-PA 1..476 1..480 2493 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15568-PA 476 GD15568-PA 1..476 1..480 2502 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15614-PA 496 GJ15614-PA 16..496 22..480 1770 76.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15898-PA 503 GK15898-PA 34..503 24..480 1811 79.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17357-PA 479 GE17357-PA 14..479 13..480 2220 95.5 Plus

LD35087.hyp Sequence

Translation from 51 to 1493

> LD35087.hyp
MASGTSGTSSSETAQSTDMAPSSAEKWGFPLIELYRLAFTFYKRNSGKAI
HLSYEDNLKLIAFKQQAALGPFNTSRAPALGVLDVIGRDRQQHWQLLGEI
TREQAMEGFVDLLDTMCSAFRPYIEAVRQDRDETLRKELRLMEEKKEARE
RQENAQQELLEEGYKEELQRRQLQDALNKQTYQQFKLYAEKQFPGNPEQQ
AVLIHQLQREHYHQYMQQLHLQNQNQNQNQNTEDKGHQEAEHVPGNNNNS
STDLPNAMEGLKLGEVETQQHQQLAEQQDGHVEQTLEGVGQEQHGEEEYD
DYVMICPAKIWTRPDIEQFKTEVSAGDGDGVITIGHGDTVTVRVPTNMNG
KCIFWEFATDSYDIGFGIYFEWAKPVTNEVTVHVSDSDEDEDCVDEDYLS
TTEDLESGSLSQERGAVNNPTAAPKAPISIIVPIYRRECYNEVYVGSHSY
PGEGVYLLKFDNSYSIWRNKTLYYRVYYER*

LD35087.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-PB 480 CG14232-PB 1..480 1..480 2541 100 Plus
CG14232-PA 480 CG14232-PA 1..480 1..480 2541 100 Plus