Clone LD35157 Report

Search the DGRC for LD35157

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:351
Well:57
Vector:pOT2
Associated Gene/TranscriptCG31357-RA
Protein status:LD35157.pep: gold
Preliminary Size:1833
Sequenced Size:1663

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13638 2002-01-01 Sim4 clustering to Release 2
CG31357 2002-05-18 Blastp of sequenced clone
CG31357 2003-01-01 Sim4 clustering to Release 3
CG31357 2008-04-29 Release 5.5 accounting
CG31357 2008-08-15 Release 5.9 accounting
CG31357 2008-12-18 5.12 accounting

Clone Sequence Records

LD35157.complete Sequence

1663 bp (1663 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118954

> LD35157.complete
GAAAAGAAAACGCAATTGCGTCTCTAAAAAGAGGATAAAACCAAATTGCA
TCGCAACCGAAACGCAAAAATGTCCGAGATCAAGGCGTTGGAGCACGCCA
CCCTAAAAGTGCCATACGAGATGCTGAACAAGCGCTTCCGTTCGGCACAG
AAGATCATCGACAGGGAGGTGGACCAGGTGATCAATGTATCGCGTCAGGT
GGAAAAGGCCCTAGAAGCAGAGGAGGGTCCCATTCTGGCCGAGGTCACCA
AGCTGGTGGATAACGTAGCGCAGAAATTGCAGGTGCTCAAGCGCAAGGCC
GAGGAGAGCATCAATGATGAGCTGAGCGTCACACAGATCTGCAAGCGCAA
GCTGGACCACCTAAAGGGCATTACACCGCCAAGCAGCGTTACAGGCGACC
TGTGGCAGGGTTCCGTGGACCAATGGAAGCGGATCCGACTAGACCGCCTG
GTCATCGAGCACCTGCTGCGCATGGGATACTATGAAACGGCCGAGGAGCT
GGCCGCCAAGTCCGATGTGCGCCACCTGACCAACCTGGACATTTTTCAGA
CGTCGCGCGAGGTCGAGGATGACTTGGCCAGTCACAGCACCACCAAATGC
GTGCTTTGGTGCATAGACAATAAGTCTAAGCTCCGCAAGATCAACTCGAC
CATTGAATTCAGCCTGAGGGTGCAAGAGTTCATCGAGCTCGTGCGTCAAA
ATCAGCGTTTTGAGGCTGTGAAGCATTCGCGTCGCTACTTCCCCGCATAC
GAGAAGACTCAGCTGAATGAGATCTGCCACGTGATGGCCCTGCTGGCCTA
TCCGGCCGATGCCCAAGCCGAGCACTACCGCAAGTACATGGATCCGCAGC
GGTGGCAAAAGTTGGTGTTGGACTTCCGTCAAGAGAACTACCGCCTCTTC
CAGCTATCCAGCACGTCCGTCTTCTCGGCAGCCGTGCAGGCCGGTCTGTC
GGCCCTGAAGACGCCCCACTGCTATGCTCAGACCTGCCGTAACCTTAACT
GCCCGGTGTGTCAGGAGGATCTCAACCGCATCGCTCTCAAGTTGCCATAC
TCGCACTGTGTGCAGAGCCGTCTTATATGCCGGGTCACAGGGCTGCCGCT
CAACGAGCACAATCAGCCGATGATGCTGCCCAACGGACAGATCTTTGGTC
AGATGGCTCTGCCGGACATCACCAAAGACGACGGTACCGTCACCTGTCCG
GTGACCAATACGAAGTTCTCCAACCCCAAGGTCGAAAAGGTCTTTGTGAT
GTAAGCGGCACTGGATTCGACGCCCTCTTCCTACCCAACCGCACTAAGTT
AAGCAATGAACAACTCTATTTTTGAACATGTAACTTCATATCTATTGTAT
GTCTAATATTATTACTATTGATAAGCTAGAGAACCCGCGAACACCCTCGA
TTTGAATTCCGATTTCGATTATTCGGCAACTGAATGCTGCTGCTGCTGCG
CGTGCGCAGGTCTATTGATTATTTGACTCCACTCCGCATCCACGGGCTGG
TTTGTTTCGCAGTCAGTGCTTCGAGGTTGATTCACGCATACGGCGTAATT
CGACTCCGCCTCCGAAGTGGCACACTATGCACAACTAACACCACTTATAT
ATTACATTAAAATACAAATGAAATAAAGGTTAAATCGTACGACTTAAAAA
AAAAAAAAAAAAA

LD35157.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31357-RA 1645 CG31357-RA 1..1645 1..1645 8225 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20651517..20653161 1645..1 8195 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24828278..24829923 1646..1 8230 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24569109..24570754 1646..1 8230 100 Minus
Blast to na_te.dros performed 2019-03-16 01:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 1771..1910 31..162 130 61 Plus
Tabor 7345 Tabor TABOR 7345bp 3427..3480 1570..1624 119 70.9 Plus

LD35157.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:22:01 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20651517..20653161 1..1645 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:14 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
CG31357-RA 1..1185 70..1254 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:15 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
CG31357-RA 1..1185 70..1254 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:05:16 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
CG31357-RA 1..1185 70..1254 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:26 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
CG31357-RA 1..1185 70..1254 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:31:28 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
CG31357-RA 1..1185 70..1254 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:19:10 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
CG31357-RA 1..1645 1..1645 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:15 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
CG31357-RA 1..1645 1..1645 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:05:16 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
CG31357-RA 37..1681 1..1645 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:26 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
CG31357-RA 1..1645 1..1645 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:31:28 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
CG31357-RA 37..1681 1..1645 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:01 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24828279..24829923 1..1645 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:01 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24828279..24829923 1..1645 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:01 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24828279..24829923 1..1645 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:16 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20654001..20655645 1..1645 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:49 Download gff for LD35157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24569110..24570754 1..1645 100   Minus

LD35157.hyp Sequence

Translation from 69 to 1253

> LD35157.hyp
MSEIKALEHATLKVPYEMLNKRFRSAQKIIDREVDQVINVSRQVEKALEA
EEGPILAEVTKLVDNVAQKLQVLKRKAEESINDELSVTQICKRKLDHLKG
ITPPSSVTGDLWQGSVDQWKRIRLDRLVIEHLLRMGYYETAEELAAKSDV
RHLTNLDIFQTSREVEDDLASHSTTKCVLWCIDNKSKLRKINSTIEFSLR
VQEFIELVRQNQRFEAVKHSRRYFPAYEKTQLNEICHVMALLAYPADAQA
EHYRKYMDPQRWQKLVLDFRQENYRLFQLSSTSVFSAAVQAGLSALKTPH
CYAQTCRNLNCPVCQEDLNRIALKLPYSHCVQSRLICRVTGLPLNEHNQP
MMLPNGQIFGQMALPDITKDDGTVTCPVTNTKFSNPKVEKVFVM*

LD35157.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31357-PA 394 CG31357-PA 1..394 1..394 2042 100 Plus
CG3295-PA 432 CG3295-PA 73..334 40..296 158 23.3 Plus

LD35157.pep Sequence

Translation from 69 to 1253

> LD35157.pep
MSEIKALEHATLKVPYEMLNKRFRSAQKIIDREVDQVINVSRQVEKALEA
EEGPILAEVTKLVDNVAQKLQVLKRKAEESINDELSVTQICKRKLDHLKG
ITPPSSVTGDLWQGSVDQWKRIRLDRLVIEHLLRMGYYETAEELAAKSDV
RHLTNLDIFQTSREVEDDLASHSTTKCVLWCIDNKSKLRKINSTIEFSLR
VQEFIELVRQNQRFEAVKHSRRYFPAYEKTQLNEICHVMALLAYPADAQA
EHYRKYMDPQRWQKLVLDFRQENYRLFQLSSTSVFSAAVQAGLSALKTPH
CYAQTCRNLNCPVCQEDLNRIALKLPYSHCVQSRLICRVTGLPLNEHNQP
MMLPNGQIFGQMALPDITKDDGTVTCPVTNTKFSNPKVEKVFVM*

LD35157.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18769-PA 393 GF18769-PA 1..393 1..394 2034 95.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12315-PA 394 GG12315-PA 1..394 1..394 2118 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20844-PA 392 GH20844-PA 1..392 1..394 1861 86.8 Plus
Dgri\GH21373-PA 438 GH21373-PA 152..340 117..296 161 24.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31357-PA 394 CG31357-PA 1..394 1..394 2042 100 Plus
CG3295-PA 432 CG3295-PA 73..334 40..296 158 23.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10713-PA 392 GI10713-PA 1..392 1..394 1830 84.3 Plus
Dmoj\GI18549-PA 437 GI18549-PA 151..339 117..296 156 24.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13856-PA 724 GL13856-PA 336..724 5..394 1940 91.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16204-PA 393 GA16204-PA 1..393 1..394 1971 91.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17779-PA 394 GM17779-PA 1..394 1..394 2119 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18264-PA 394 GD18264-PA 1..394 1..394 2119 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23130-PA 392 GJ23130-PA 1..392 1..394 1882 87.8 Plus
Dvir\GJ20343-PA 437 GJ20343-PA 151..339 117..296 160 24.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13163-PA 394 GK13163-PA 1..394 1..394 1947 89.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10769-PA 394 GE10769-PA 1..394 1..394 2119 99.7 Plus