Clone LD35174 Report

Search the DGRC for LD35174

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:351
Well:74
Vector:pOT2
Associated Gene/TranscriptCG4293-RA
Protein status:LD35174.pep: gold
Preliminary Size:1826
Sequenced Size:1710

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4293 2001-01-01 Release 2 assignment
CG4293 2001-07-04 Blastp of sequenced clone
CG4293 2003-01-01 Sim4 clustering to Release 3
CG4293 2008-04-29 Release 5.5 accounting
CG4293 2008-08-15 Release 5.9 accounting
CG4293 2008-12-18 5.12 accounting

Clone Sequence Records

LD35174.complete Sequence

1710 bp (1710 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051850

> LD35174.complete
GCAACTCTGTGCCGCACAGCTGATCTTCTTACCGGCTACAAATTAGATTT
CTTACATTTGTTTATTTACGCCGCCTCCTACTTGCTAGGCCTCAGGAAAG
CATAAACCTAGGAACGGAGCCTGGTACAGACACGGAGCTATACACCTACA
ACAACGCACATTTCACCTAGTTGCGCAACGCACTTAGCCGGCTGGCGTGG
CAGTGCACGGTAAGCTGAAACATGACGGCCACGTTGCGTTACCGCGGCGA
CAAAAGCAATCTCTTGGAGTTCGCCAAGAACTTGGACGCGTTCAAAAAAG
TGCCAGAGAAGTACACGGAGACCTCGGAAATCGGAGGCACCCTATCCCTG
TTGAGCCGCCTGTTGATCGTTTACCTGGTTTACACGGAGCTGCACTACTA
CTGGCACGAGACGGACATTGTGTACCAGTTCGAGCCGGACATCGCTCTGG
ACGAGCAGGTGCAGATGCACGTCGACATCACGGTGGCCATGCCCTGCGCC
TCGCTGTCCGGCGTAGATCTCATGGACGAGACGCAGCAGGACGTGTTCGC
CTATGGGACTCTGCAGCGGGAGGGTGTCTGGTGGGAGATGTCCGAACACG
ACCGGCTGCAGTTCCAGGCCATACAGATTCAAAACCACTACCTGCGCGAG
GAGTTTCACTCGGTGGCCGATGTACTGTTCAAGGACATAATGCGGGATAA
CCATCCTGCGCGGGAGAGTGCCTCGAAGGCGCCTGCTGCCCCGCCGCCAG
GAGCGTTGCCACTGTCTGTCGACCTGCATGGCCGGCACAACGTTCAGCCA
GAAAGCAAATTCGATGCGTGTCGTCTGCACGGAACGCTGGGCATCAACAA
AGTGGCCGGTGTGCTCCACCTCGTGGGCGGAGCTCAGCCCGTTGTGGGAC
TCTTCGAGGACCACTGGATGATCGAACTGCGGCGCATGCCTGCGAACTTT
ACGCATCGCATTAACCGGCTCAGCTTTGGACAGTACTCGGGAAGGATTGT
CCAGCCATTGGAGGGCGACGAGATTGTCATCCACGAGGAGGCTACCACAG
TACAATACTTCCTGAAGGTTGTGCCCACAGAGATCCACCAGACTTTCACC
ACCATATACGCTTTTCAGTATGCCGTCACCGAAAACGTGCGAAAACTAGA
TTCAGAGCGCAATTCGTACGGCTCCCCTGGCATTTACTTTAAGTACGACT
GGTCGGCTCTGAAAATTATTGTGCGCAACGATCGCGATCACCTAGTAACC
TTTGCCATCCGCCTGTGCTCAATTATATCAGGAATCATTGTCATCTCGGG
GGCGATAAATGCCTTGCTTCTGAGCATTAGAAGCCGCCTACTCCGCACCT
TCGCTCCGGTTTTGTACAACCGATTGACCAGAGCCAAGGCTGCTGCTCCG
GATGCTCCTTCTCTATCCTCGCTCTCCGCAAAGGCCGGGACAGCTCCGCC
CGTCAACGAGCTTCTGCACACAGCCAACCTGATGGCCAGCGTGGACATCT
CGGCCTATTTGCCCACGACGCCGCCAAAGCTCCAAGCCGGCCTTTAGCCG
GCATTTCTGTGCAACAGGGAATCTCATTCTGCAAACTACTAACCCTTCTT
TTTTACGCAAATATTGTATTCTCTCATTAAGATACGAAAAAAAAACACAC
ACTAATATGTCACGAATGCTGTACATAAATATGAATAAGTTCAAAAAAAA
AAAAAAAAAA

LD35174.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4293-RA 1847 CG4293-RA 108..1803 1..1696 8480 100 Plus
CG4293-RD 2052 CG4293-RD 313..2008 1..1696 8480 100 Plus
CG4293.a 2153 CG4293.a 635..2109 222..1696 7375 100 Plus
CG4293.a 2153 CG4293.a 313..533 1..221 1105 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 422583..423389 1149..343 4035 100 Minus
chrX 22417052 chrX 421979..422524 1692..1147 2730 100 Minus
chrX 22417052 chrX 423670..423890 221..1 1105 100 Minus
chrX 22417052 chrX 423448..423568 342..222 605 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 528545..529351 1149..343 4035 100 Minus
X 23542271 X 527937..528486 1696..1147 2750 100 Minus
X 23542271 X 529632..529852 221..1 1105 100 Minus
X 23542271 X 529410..529530 342..222 605 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 536643..537449 1149..343 4035 100 Minus
X 23527363 X 536035..536584 1696..1147 2750 100 Minus
X 23527363 X 537730..537950 221..1 1105 100 Minus
X 23527363 X 537508..537628 342..222 605 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:03:50 has no hits.

LD35174.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:04:54 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 421979..422521 1150..1692 100 <- Minus
chrX 422583..423389 343..1149 100 <- Minus
chrX 423448..423568 222..342 100 <- Minus
chrX 423670..423890 1..221 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:15 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RC 1..1326 222..1547 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:18:25 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RC 1..1326 222..1547 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:08:50 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RA 1..1326 222..1547 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:00 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RC 1..1326 222..1547 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:27 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RA 1..1326 222..1547 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:13:42 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RD 285..1976 1..1692 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:18:25 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RD 285..1976 1..1692 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:50 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RD 285..1976 1..1692 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:00 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RD 285..1976 1..1692 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:27 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RD 285..1976 1..1692 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:04:54 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
X 527941..528483 1150..1692 100 <- Minus
X 528545..529351 343..1149 100 <- Minus
X 529410..529530 222..342 100 <- Minus
X 529632..529852 1..221 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:04:54 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
X 527941..528483 1150..1692 100 <- Minus
X 528545..529351 343..1149 100 <- Minus
X 529410..529530 222..342 100 <- Minus
X 529632..529852 1..221 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:04:54 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
X 527941..528483 1150..1692 100 <- Minus
X 528545..529351 343..1149 100 <- Minus
X 529410..529530 222..342 100 <- Minus
X 529632..529852 1..221 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:50 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 421974..422516 1150..1692 100 <- Minus
arm_X 422578..423384 343..1149 100 <- Minus
arm_X 423443..423563 222..342 100 <- Minus
arm_X 423665..423885 1..221 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:28:13 Download gff for LD35174.complete
Subject Subject Range Query Range Percent Splice Strand
X 536039..536581 1150..1692 100 <- Minus
X 536643..537449 343..1149 100 <- Minus
X 537508..537628 222..342 100 <- Minus
X 537730..537950 1..221 100   Minus

LD35174.hyp Sequence

Translation from 221 to 1546

> LD35174.hyp
MTATLRYRGDKSNLLEFAKNLDAFKKVPEKYTETSEIGGTLSLLSRLLIV
YLVYTELHYYWHETDIVYQFEPDIALDEQVQMHVDITVAMPCASLSGVDL
MDETQQDVFAYGTLQREGVWWEMSEHDRLQFQAIQIQNHYLREEFHSVAD
VLFKDIMRDNHPARESASKAPAAPPPGALPLSVDLHGRHNVQPESKFDAC
RLHGTLGINKVAGVLHLVGGAQPVVGLFEDHWMIELRRMPANFTHRINRL
SFGQYSGRIVQPLEGDEIVIHEEATTVQYFLKVVPTEIHQTFTTIYAFQY
AVTENVRKLDSERNSYGSPGIYFKYDWSALKIIVRNDRDHLVTFAIRLCS
IISGIIVISGAINALLLSIRSRLLRTFAPVLYNRLTRAKAAAPDAPSLSS
LSAKAGTAPPVNELLHTANLMASVDISAYLPTTPPKLQAGL*

LD35174.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4293-PD 441 CG4293-PD 1..441 1..441 2281 100 Plus
CG4293-PC 441 CG4293-PC 1..441 1..441 2281 100 Plus
CG4293-PA 441 CG4293-PA 1..441 1..441 2281 100 Plus
CG4293-PB 441 CG4293-PB 1..441 1..441 2281 100 Plus
CG4293-PE 439 CG4293-PE 1..439 1..441 2258 99.5 Plus

LD35174.pep Sequence

Translation from 221 to 1546

> LD35174.pep
MTATLRYRGDKSNLLEFAKNLDAFKKVPEKYTETSEIGGTLSLLSRLLIV
YLVYTELHYYWHETDIVYQFEPDIALDEQVQMHVDITVAMPCASLSGVDL
MDETQQDVFAYGTLQREGVWWEMSEHDRLQFQAIQIQNHYLREEFHSVAD
VLFKDIMRDNHPARESASKAPAAPPPGALPLSVDLHGRHNVQPESKFDAC
RLHGTLGINKVAGVLHLVGGAQPVVGLFEDHWMIELRRMPANFTHRINRL
SFGQYSGRIVQPLEGDEIVIHEEATTVQYFLKVVPTEIHQTFTTIYAFQY
AVTENVRKLDSERNSYGSPGIYFKYDWSALKIIVRNDRDHLVTFAIRLCS
IISGIIVISGAINALLLSIRSRLLRTFAPVLYNRLTRAKAAAPDAPSLSS
LSAKAGTAPPVNELLHTANLMASVDISAYLPTTPPKLQAGL*

LD35174.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22223-PA 448 GF22223-PA 1..448 1..441 1850 82.4 Plus
Dana\GF10736-PA 372 GF10736-PA 176..355 187..366 208 31.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12755-PA 441 GG12755-PA 1..441 1..441 2021 92.5 Plus
Dere\GG13555-PA 373 GG13555-PA 176..356 187..366 209 31.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12601-PA 434 GH12601-PA 1..431 1..436 1637 76.4 Plus
Dgri\GH17030-PA 372 GH17030-PA 176..355 187..366 220 31.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4293-PD 441 CG4293-PD 1..441 1..441 2281 100 Plus
CG4293-PC 441 CG4293-PC 1..441 1..441 2281 100 Plus
CG4293-PA 441 CG4293-PA 1..441 1..441 2281 100 Plus
CG4293-PB 441 CG4293-PB 1..441 1..441 2281 100 Plus
CG4293-PE 439 CG4293-PE 1..439 1..441 2258 99.5 Plus
CG7011-PA 373 CG7011-PA 8..356 19..366 203 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15435-PA 433 GI15435-PA 1..424 1..432 1683 76.9 Plus
Dmoj\GI12235-PA 372 GI12235-PA 176..355 187..366 213 31.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20164-PA 445 GL20164-PA 1..442 1..436 1797 82.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18088-PA 445 GA18088-PA 1..442 1..436 1807 82.9 Plus
Dpse\GA20029-PA 372 GA20029-PA 176..355 187..366 202 31.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19035-PA 437 GM19035-PA 1..437 1..441 2245 95.7 Plus
Dsec\GM24497-PA 373 GM24497-PA 176..356 187..366 202 31 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16474-PA 441 GD16474-PA 1..441 1..441 2294 97.3 Plus
Dsim\GD12569-PA 373 GD12569-PA 176..356 187..366 202 31 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14724-PA 434 GJ14724-PA 1..431 1..436 1637 76.5 Plus
Dvir\GJ11466-PA 372 GJ11466-PA 176..355 187..366 216 31.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16119-PA 443 GK16119-PA 1..440 1..436 1893 79.8 Plus
Dwil\GK20487-PA 372 GK20487-PA 176..355 187..366 209 31.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16580-PA 430 GE16580-PA 1..430 1..441 1967 90.9 Plus
Dyak\GE19855-PA 373 GE19855-PA 8..356 19..366 202 23.2 Plus