Clone LD35228 Report

Search the DGRC for LD35228

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:352
Well:28
Vector:pOT2
Associated Gene/TranscriptDMAP1-RA
Protein status:LD35228.pep: gold
Preliminary Size:1733
Sequenced Size:1568

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11132 2001-01-01 Release 2 assignment
CG11132 2001-09-19 Blastp of sequenced clone
CG11132 2003-01-01 Sim4 clustering to Release 3
DMAP1 2008-04-29 Release 5.5 accounting
DMAP1 2008-08-15 Release 5.9 accounting
DMAP1 2008-12-18 5.12 accounting

Clone Sequence Records

LD35228.complete Sequence

1568 bp (1568 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058649

> LD35228.complete
CATTATAAGAAATTTTGTTCGTTTTGCAAAAAACTATCAAAATAAACAAT
AAGCAACTCAATTTTTAGCAGACATTAGAGTAGCAAAAGTTTTAAATCAT
GTCGGCCGATGTGCGTGATATTCTGGACATGGAGCGTGCCAACACGCCCG
AGGTGACGCGGGATTCGTTTCTGGCCACCAAGAAGCGCAACTTTGAGCGG
ACCAAGACTGCGTCCCGGCGTCCGGAGGGCATGCATAGGGAGGTGTTTGC
CCTGCTCTACACAGACAAGAAAGATGCTCCGCCTCTCCTGCCCACGGATA
CCGCTCTGGGAATCGGAGCGGGATACAAAGAGACGAAGGCCCGCCTGGGC
ATGAAGAAGGTGCGCAAGTGGGAGTGGGCGCCCTTTTCGAATCCGGCACG
TAACGATTCGGCGGTTTTTCACCACTGGAAACGAGTCACCGACAATTCCA
CCGACTATCCGTTCGCCAAGTTCAACAAGCAACTGGAGGTGCCCTCGTAC
ACGATGACGGAGTACAATGCCCACTTAAGGAACAACATCAACAACTGGAG
CAAGGTGCAGACCGATCACCTATTCGACCTGGCCAGAAGGTTCGATCTTC
GCTTCATTGTGATGGCAGATCGTTGGAACCGTCAGCAGCATGGAACCAAA
ACTGTGGAGGAGCTCAAAGAACGCTACTATGAGGTGGTCGCTCTGCTCGC
CAAGGCCAAGAATCAGACGAGTGAGAAGAAAGTATTTGTGTATGACGTCG
AGCACGAACGGCGCCGCAAGGAGCAGCTGGAGAAGCTGTTCAAACGCACG
ACACAACAGGTGGAGGAGGAGAATATGCTTATCAACGAGATGAAGAAAAT
CGAGGCGCGCAAAAAGGAACGCGAGCGCAAGACACAAGACTTGCAGAAGC
TTATTTCGCAAGCGGATCAGCAGAATGAGCACGCATCGAATACGCCGAGT
ACGCGAAAGTACGAGAAGAAGCTGCACAAAAAGAAGGTACATCAGCAGCC
GCGACCCTCCAGGGTGGACTCGGTGGTTAATGCCATAGAGATCGGTAGCA
GCGGCATCAAGTTCGCCGACCTGCGCGGTTCCGGGGTTTCTCTGCGCTCG
CAGAGGATGAAGCTGCCGGCGAATATCGGCCAGCGCAAAGTGAAAGCCCT
CGAGCAGGCAATCCAGGAGTTTAAAGTTGATCCCGCTCCGCCGCCCACGG
AGGACATTTGCACCTCCTTCAACGAGCTTCGTTCCGATATGGTATTGCTC
TGCGAGCTTCGCACCGCCCTATCCACCTGCGTCTACGAAATGGAGAGCCT
GAAGCACCAATACGAAGCCGCCTGCCCGGGAAAGACACTGAACATACCGC
CCTCGCTGGTGCCCATCAAGACCGAAGCCCTGGACAATAGCACAAATTAA
TTAAGTTAACGCGGCCCGTTTCCACTCAGATTCCCCAGACGCCGAAGTGT
GTGCGGCGTGCTAATCATTGTAACCCGTTTTCCACTGTCCATATTTGTGC
ATTTGCGCTACTCCCAGTCCGCATGGGGAAATAAATGGATAAACAAGAAA
AAAAAAAAAAAAAAAAAA

LD35228.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-RA 1793 DMAP1-RA 43..1593 1..1551 7755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16531489..16532080 588..1179 2945 99.8 Plus
chr2R 21145070 chr2R 16531040..16531432 199..591 1965 100 Plus
chr2R 21145070 chr2R 16532363..16532577 1333..1547 1075 100 Plus
chr2R 21145070 chr2R 16530785..16530984 1..200 1000 100 Plus
chr2R 21145070 chr2R 16532139..16532294 1179..1334 750 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20644777..20645368 588..1179 2960 100 Plus
2R 25286936 2R 20644328..20644720 199..591 1965 100 Plus
2R 25286936 2R 20645651..20645869 1333..1551 1095 100 Plus
2R 25286936 2R 20644073..20644272 1..200 1000 100 Plus
2R 25286936 2R 20645427..20645582 1179..1334 780 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20645976..20646567 588..1179 2960 100 Plus
2R 25260384 2R 20645527..20645919 199..591 1965 100 Plus
2R 25260384 2R 20646850..20647068 1333..1551 1095 100 Plus
2R 25260384 2R 20645272..20645471 1..200 1000 100 Plus
2R 25260384 2R 20646626..20646781 1179..1334 780 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:38:26 has no hits.

LD35228.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:39:36 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16532140..16532294 1180..1334 98 -> Plus
chr2R 16532365..16532577 1335..1547 100   Plus
chr2R 16530785..16530983 1..199 100 -> Plus
chr2R 16531041..16531430 200..589 100 -> Plus
chr2R 16531491..16532080 590..1179 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:20 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 1..1302 99..1400 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:43 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 1..1302 99..1400 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:05 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 1..1302 99..1400 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:08 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 1..1302 99..1400 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:36:52 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 1..1302 99..1400 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:17 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 36..1582 1..1547 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:43 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 43..1589 1..1547 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:05 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 38..1584 1..1547 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:09 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 36..1582 1..1547 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:36:52 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 38..1584 1..1547 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:36 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20644073..20644271 1..199 100 -> Plus
2R 20644329..20644718 200..589 100 -> Plus
2R 20644779..20645368 590..1179 100 -> Plus
2R 20645428..20645582 1180..1334 100 -> Plus
2R 20645653..20645865 1335..1547 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:36 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20644073..20644271 1..199 100 -> Plus
2R 20644329..20644718 200..589 100 -> Plus
2R 20644779..20645368 590..1179 100 -> Plus
2R 20645428..20645582 1180..1334 100 -> Plus
2R 20645653..20645865 1335..1547 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:36 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20644073..20644271 1..199 100 -> Plus
2R 20644329..20644718 200..589 100 -> Plus
2R 20644779..20645368 590..1179 100 -> Plus
2R 20645428..20645582 1180..1334 100 -> Plus
2R 20645653..20645865 1335..1547 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:05 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16531578..16531776 1..199 100 -> Plus
arm_2R 16531834..16532223 200..589 100 -> Plus
arm_2R 16532284..16532873 590..1179 100 -> Plus
arm_2R 16532933..16533087 1180..1334 100 -> Plus
arm_2R 16533158..16533370 1335..1547 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:39 Download gff for LD35228.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20645528..20645917 200..589 100 -> Plus
2R 20645978..20646567 590..1179 100 -> Plus
2R 20646627..20646781 1180..1334 100 -> Plus
2R 20646852..20647064 1335..1547 100   Plus
2R 20645272..20645470 1..199 100 -> Plus

LD35228.pep Sequence

Translation from 98 to 1399

> LD35228.pep
MSADVRDILDMERANTPEVTRDSFLATKKRNFERTKTASRRPEGMHREVF
ALLYTDKKDAPPLLPTDTALGIGAGYKETKARLGMKKVRKWEWAPFSNPA
RNDSAVFHHWKRVTDNSTDYPFAKFNKQLEVPSYTMTEYNAHLRNNINNW
SKVQTDHLFDLARRFDLRFIVMADRWNRQQHGTKTVEELKERYYEVVALL
AKAKNQTSEKKVFVYDVEHERRRKEQLEKLFKRTTQQVEEENMLINEMKK
IEARKKERERKTQDLQKLISQADQQNEHASNTPSTRKYEKKLHKKKVHQQ
PRPSRVDSVVNAIEIGSSGIKFADLRGSGVSLRSQRMKLPANIGQRKVKA
LEQAIQEFKVDPAPPPTEDICTSFNELRSDMVLLCELRTALSTCVYEMES
LKHQYEAACPGKTLNIPPSLVPIKTEALDNSTN*

LD35228.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12189-PA 433 GF12189-PA 1..433 1..433 2191 96.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22049-PA 433 GG22049-PA 1..433 1..433 2306 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21990-PA 437 GH21990-PA 1..435 1..431 2118 92 Plus
Dgri\GH11498-PA 196 GH11498-PA 1..194 238..431 917 94.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-PA 433 CG11132-PA 1..433 1..433 2248 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19691-PA 433 GI19691-PA 1..433 1..433 2127 92.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17040-PA 433 GL17040-PA 1..433 1..433 2100 91.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10782-PA 433 GA10782-PA 1..433 1..433 2103 91.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22034-PA 433 GM22034-PA 1..433 1..433 2319 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11531-PA 433 GD11531-PA 1..433 1..433 2322 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17288-PA 433 GJ17288-PA 1..433 1..433 2157 94 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21712-PA 435 GK21712-PA 1..432 1..432 2141 93.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12131-PA 433 GE12131-PA 1..433 1..433 2301 97.9 Plus

LD35228.hyp Sequence

Translation from 98 to 1399

> LD35228.hyp
MSADVRDILDMERANTPEVTRDSFLATKKRNFERTKTASRRPEGMHREVF
ALLYTDKKDAPPLLPTDTALGIGAGYKETKARLGMKKVRKWEWAPFSNPA
RNDSAVFHHWKRVTDNSTDYPFAKFNKQLEVPSYTMTEYNAHLRNNINNW
SKVQTDHLFDLARRFDLRFIVMADRWNRQQHGTKTVEELKERYYEVVALL
AKAKNQTSEKKVFVYDVEHERRRKEQLEKLFKRTTQQVEEENMLINEMKK
IEARKKERERKTQDLQKLISQADQQNEHASNTPSTRKYEKKLHKKKVHQQ
PRPSRVDSVVNAIEIGSSGIKFADLRGSGVSLRSQRMKLPANIGQRKVKA
LEQAIQEFKVDPAPPPTEDICTSFNELRSDMVLLCELRTALSTCVYEMES
LKHQYEAACPGKTLNIPPSLVPIKTEALDNSTN*

LD35228.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-PA 433 CG11132-PA 1..433 1..433 2248 100 Plus