Clone LD35248 Report

Search the DGRC for LD35248

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:352
Well:48
Vector:pOT2
Associated Gene/Transcriptcyp33-RA
Protein status:LD35248.pep: gold
Preliminary Size:1117
Sequenced Size:946

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4886 2001-01-01 Release 2 assignment
CG4886 2001-10-10 Blastp of sequenced clone
CG4886 2003-01-01 Sim4 clustering to Release 3
cyp33 2008-04-29 Release 5.5 accounting
cyp33 2008-08-15 Release 5.9 accounting
cyp33 2008-12-18 5.12 accounting

Clone Sequence Records

LD35248.complete Sequence

946 bp (946 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061421

> LD35248.complete
TTAAACCATGTCTAACGACAAGCGCACCATTTATGTGGGCGGCCTGGCTG
ACGAGGTCACAGAGAGACTGCTGAACAATGCCTTTATACCCTTTGGGGAT
ATTGCAGATATCCAAATGCCGGCGGACTACGAATCACAGCGACACCGCGG
ATTCGCCTTTATAGAATACGAACAGAGCGAGGATGCGGCTGCTGCCATTG
ATAATATGAATGACTCCGAGCTCTGCGGACGCACAATTCGCGTGAACTTG
GCGAAACCAGTGCGCGTTAAGGAGGACAGTTTCAAGCCTATCTGGGCAGA
TGACGACTGGTTGCAGAAGCATGCGGGAGCCACGTTGCAGCCGGAAGGCG
AACCGGAGGCAGAGAAAGTGGAAACACCATCCACCGGGCCGGCAGTCATC
GAAAAGGCAGAGAAACGCAATCCACAAGTCTTCTTTGACATACGGATTGG
TGGCAATGACGCCGGTCGCATTGTGATGCTCCTCCGGGCAGATGTGGTGC
CGAAGACGGCGGAGAACTTTCGGCAATTGTGCACCCACGAGCAGGGCTAC
GGCTACAAAGGCTGCTCCTTCCACCGCGTGATACCCGAGTTTATGTGTCA
AGGAGGCGACTTCACCAACAACAATGGCACCGGCGGCAAGTCCATCTATG
GCAAAAAGTTCAACGATGAGAACTTCAATCTGAAACACAACAGTTTTGGA
ACTCTTTCAATGGCCAACTCGGGCGCCAACACAAATGGCTCGCAGTTTTT
TATATGTACCACAAAAACAGATTGGCTGGACAACAAGCACGTCGTTTTTG
GCCATGTCATCAGTGGCGCCGAGGTGGTGCGCAAGATGGAACGTTGTGGC
TCCAAGTCGGGCACTCCCAGCCAAAAGATTGTCATATACTCCTGTGGAGA
ACTCAAATAAAGAAGCTTTCACAACTAAAAAAAAAAAAAAAAAAAA

LD35248.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
cyp33-RA 1482 cyp33-RA 516..1442 1..927 4635 100 Plus
Cyp1-RA 1467 Cyp1-RA 509..771 491..753 505 79.4 Plus
CG7768.a 697 CG7768.a 184..308 491..615 190 76.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13432605..13432989 208..592 1895 99.5 Plus
chr2R 21145070 chr2R 13432334..13432541 1..208 1040 100 Plus
chr2R 21145070 chr2R 13433046..13433218 593..765 865 100 Plus
chr2R 21145070 chr2R 13433292..13433452 766..926 805 100 Plus
chrX 22417052 chrX 16208005..16208316 802..491 555 78.5 Minus
chr3L 24539361 chr3L 14208589..14208900 491..802 285 72.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17545553..17545937 208..592 1925 100 Plus
2R 25286936 2R 17545282..17545489 1..208 1040 100 Plus
2R 25286936 2R 17545994..17546166 593..765 865 100 Plus
2R 25286936 2R 17546240..17546401 766..927 810 100 Plus
X 23542271 X 16318287..16318598 802..491 555 78.5 Minus
3L 28110227 3L 14218461..14218772 491..802 270 72.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17546752..17547136 208..592 1925 100 Plus
2R 25260384 2R 17546481..17546688 1..208 1040 100 Plus
2R 25260384 2R 17547193..17547365 593..765 865 100 Plus
2R 25260384 2R 17547439..17547600 766..927 810 100 Plus
X 23527363 X 16326434..16326696 753..491 505 79.4 Minus
3L 28103327 3L 14211561..14211685 491..615 190 76.8 Plus
Blast to na_te.dros performed on 2019-03-16 19:55:30 has no hits.

LD35248.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:56:36 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13432334..13432541 1..208 100 -> Plus
chr2R 13432606..13432989 209..592 99 -> Plus
chr2R 13433046..13433218 593..765 100 -> Plus
chr2R 13433292..13433452 766..926 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:24 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 1..903 8..910 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:50:29 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 1..903 8..910 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:35:46 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 1..903 8..910 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:19:33 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 1..903 8..910 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:48 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 1..903 8..910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:35:10 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 391..1316 1..926 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:50:29 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 391..1316 1..926 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:46 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 61..986 1..926 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:19:33 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 391..1316 1..926 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:48 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 61..986 1..926 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:56:36 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17545282..17545489 1..208 100 -> Plus
2R 17545554..17545937 209..592 100 -> Plus
2R 17545994..17546166 593..765 100 -> Plus
2R 17546240..17546400 766..926 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:56:36 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17545282..17545489 1..208 100 -> Plus
2R 17545554..17545937 209..592 100 -> Plus
2R 17545994..17546166 593..765 100 -> Plus
2R 17546240..17546400 766..926 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:56:36 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17545282..17545489 1..208 100 -> Plus
2R 17545554..17545937 209..592 100 -> Plus
2R 17545994..17546166 593..765 100 -> Plus
2R 17546240..17546400 766..926 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:46 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13432787..13432994 1..208 100 -> Plus
arm_2R 13433059..13433442 209..592 100 -> Plus
arm_2R 13433499..13433671 593..765 100 -> Plus
arm_2R 13433745..13433905 766..926 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:56:15 Download gff for LD35248.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17546481..17546688 1..208 100 -> Plus
2R 17546753..17547136 209..592 100 -> Plus
2R 17547193..17547365 593..765 100 -> Plus
2R 17547439..17547599 766..926 100   Plus

LD35248.pep Sequence

Translation from 7 to 909

> LD35248.pep
MSNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFA
FIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAKPVRVKEDSFKPIWADDD
WLQKHAGATLQPEGEPEAEKVETPSTGPAVIEKAEKRNPQVFFDIRIGGN
DAGRIVMLLRADVVPKTAENFRQLCTHEQGYGYKGCSFHRVIPEFMCQGG
DFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFIC
TTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGELK
*

LD35248.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11346-PA 394 GF11346-PA 95..394 1..300 1574 95.7 Plus
Dana\GF19040-PA 155 GF19040-PA 5..155 149..299 582 71.5 Plus
Dana\GF13003-PA 205 GF13003-PA 23..190 133..299 479 54.8 Plus
Dana\GF18880-PA 946 GF18880-PA 13..182 139..299 468 55.9 Plus
Dana\GF13802-PA 183 GF13802-PA 16..183 138..299 449 53.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21795-PA 300 GG21795-PA 1..300 1..300 1603 97.7 Plus
Dere\GG19332-PA 227 GG19332-PA 67..227 139..299 614 70.8 Plus
Dere\GG21776-PA 205 GG21776-PA 18..190 121..299 489 54.4 Plus
Dere\GG11596-PA 955 GG11596-PA 16..182 142..299 469 56.3 Plus
Dere\GG10814-PA 183 GG10814-PA 16..183 138..299 448 54.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20760-PA 304 GH20760-PA 1..304 1..300 1539 92.1 Plus
Dgri\GH17842-PA 165 GH17842-PA 5..165 139..299 606 68.9 Plus
Dgri\GH10794-PA 165 GH10794-PA 5..165 139..299 601 68.3 Plus
Dgri\GH14843-PA 164 GH14843-PA 4..164 139..299 600 67.1 Plus
Dgri\GH14842-PA 164 GH14842-PA 4..164 139..299 594 65.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
cyp33-PA 300 CG4886-PA 1..300 1..300 1600 100 Plus
CG7768-PB 164 CG7768-PB 4..164 139..299 625 70.8 Plus
CG7768-PA 164 CG7768-PA 4..164 139..299 625 70.8 Plus
Cyp1-PA 227 CG9916-PA 59..227 133..299 611 68.6 Plus
CG2852-PD 205 CG2852-PD 18..190 121..299 481 54.4 Plus
CG2852-PA 205 CG2852-PA 18..190 121..299 481 54.4 Plus
CG17266-PB 183 CG17266-PB 16..183 138..299 451 54.2 Plus
CG17266-PA 183 CG17266-PA 16..183 138..299 451 54.2 Plus
Moca-cyp-PA 970 CG1866-PA 13..182 139..299 446 55.9 Plus
CG8336-PD 383 CG8336-PD 6..183 130..299 400 47.2 Plus
CG8336-PC 383 CG8336-PC 6..183 130..299 400 47.2 Plus
CG8336-PA 383 CG8336-PA 6..183 130..299 400 47.2 Plus
CG8336-PB 383 CG8336-PB 6..183 130..299 400 47.2 Plus
ninaA-PA 237 CG3966-PA 28..191 140..299 322 40.9 Plus
CG3511-PB 637 CG3511-PB 491..623 153..290 305 53.2 Plus
CG3511-PA 637 CG3511-PA 491..623 153..290 305 53.2 Plus
Cypl-PA 176 CG13892-PA 30..151 153..277 282 50 Plus
CG7747-PA 517 CG7747-PA 282..429 145..295 273 43.8 Plus
CG11777-PA 161 CG11777-PA 8..133 151..279 238 43.1 Plus
CG10907-PA 502 CG10907-PA 22..133 153..267 229 46.6 Plus
CG5071-PD 680 CG5071-PD 514..675 139..298 219 31.7 Plus
CG5071-PB 680 CG5071-PB 514..675 139..298 219 31.7 Plus
Spx-PA 347 CG3780-PA 10..89 3..82 169 43.8 Plus
hfp-PJ 545 CG12085-PJ 40..111 8..79 159 44.4 Plus
hfp-PI 545 CG12085-PI 40..111 8..79 159 44.4 Plus
hfp-PH 545 CG12085-PH 40..111 8..79 159 44.4 Plus
hfp-PG 545 CG12085-PG 40..111 8..79 159 44.4 Plus
hfp-PF 545 CG12085-PF 40..111 8..79 159 44.4 Plus
hfp-PE 545 CG12085-PE 40..111 8..79 159 44.4 Plus
hfp-PB 545 CG12085-PB 40..111 8..79 159 44.4 Plus
hfp-PD 545 CG12085-PD 40..111 8..79 159 44.4 Plus
hfp-PC 545 CG12085-PC 40..111 8..79 159 44.4 Plus
hfp-PA 637 CG12085-PA 132..203 8..79 159 44.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20843-PA 303 GI20843-PA 1..303 1..300 1510 91.7 Plus
Dmoj\GI13698-PA 165 GI13698-PA 5..165 139..299 629 72 Plus
Dmoj\GI21755-PA 165 GI21755-PA 5..165 139..299 626 72.7 Plus
Dmoj\GI13696-PA 166 GI13696-PA 4..165 139..300 626 71.6 Plus
Dmoj\GI13614-PA 164 GI13614-PA 4..164 139..299 623 70.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11464-PA 302 GL11464-PA 1..302 1..300 1532 92.4 Plus
Dper\GL17482-PA 205 GL17482-PA 18..190 121..299 479 53.3 Plus
Dper\GL23654-PA 939 GL23654-PA 13..182 139..299 468 54.7 Plus
Dper\GL10991-PA 183 GL10991-PA 16..183 138..299 443 53 Plus
Dper\GL12709-PA 384 GL12709-PA 3..183 127..299 415 49.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18502-PA 302 GA18502-PA 1..302 1..300 1536 92.4 Plus
Dpse\Cyp1-PA 226 GA22120-PA 66..226 139..299 614 69.6 Plus
Dpse\GA15486-PA 205 GA15486-PA 18..190 121..299 479 53.3 Plus
Dpse\GA15038-PA 930 GA15038-PA 13..182 139..299 472 55.3 Plus
Dpse\GA14426-PA 183 GA14426-PA 16..183 138..299 443 53 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21798-PA 301 GM21798-PA 1..301 1..300 1607 99 Plus
Dsec\GM25460-PA 164 GM25460-PA 4..164 139..299 619 70.8 Plus
Dsec\GM13410-PA 227 GM13410-PA 67..227 139..299 614 70.2 Plus
Dsec\GM15627-PA 205 GM15627-PA 22..190 125..299 492 55.1 Plus
Dsec\GM20863-PA 183 GM20863-PA 16..183 138..299 449 54.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11288-PA 301 GD11288-PA 1..301 1..300 1610 99.3 Plus
Dsim\GD20227-PA 155 GD20227-PA 9..155 153..299 565 71.4 Plus
Dsim\GD25116-PA 203 GD25116-PA 20..188 125..299 492 55.1 Plus
Dsim\GD21371-PA 1003 GD21371-PA 13..182 139..299 468 55.9 Plus
Dsim\GD10314-PA 183 GD10314-PA 16..183 138..299 449 54.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20579-PA 302 GJ20579-PA 1..302 1..300 1540 93.4 Plus
Dvir\GJ19133-PA 223 GJ19133-PA 63..223 139..299 630 71.4 Plus
Dvir\GJ14038-PA 164 GJ14038-PA 4..164 139..299 624 71.4 Plus
Dvir\GJ13951-PA 164 GJ13951-PA 4..164 139..299 620 70.8 Plus
Dvir\GJ14037-PA 164 GJ14037-PA 4..164 139..299 613 70.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21899-PA 223 GK21899-PA 1..221 1..218 1102 91.4 Plus
Dwil\GK14585-PA 165 GK14585-PA 5..165 139..299 618 70.8 Plus
Dwil\GK16511-PA 165 GK16511-PA 5..165 139..299 611 70.2 Plus
Dwil\GK21428-PA 204 GK21428-PA 21..189 125..299 480 54 Plus
Dwil\GK23148-PA 183 GK23148-PA 16..183 138..299 456 55.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11871-PA 300 GE11871-PA 1..300 1..300 1603 97.7 Plus
Dyak\GE22008-PA 180 GE22008-PA 20..180 139..299 621 70.8 Plus
Dyak\Cyp1-PA 227 GE15979-PA 67..227 139..299 611 69.6 Plus
Dyak\GE11851-PA 205 GE11851-PA 18..190 121..299 487 53.3 Plus
Dyak\GE24621-PA 183 GE24621-PA 16..183 138..299 448 54.2 Plus

LD35248.hyp Sequence

Translation from 7 to 909

> LD35248.hyp
MSNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFA
FIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAKPVRVKEDSFKPIWADDD
WLQKHAGATLQPEGEPEAEKVETPSTGPAVIEKAEKRNPQVFFDIRIGGN
DAGRIVMLLRADVVPKTAENFRQLCTHEQGYGYKGCSFHRVIPEFMCQGG
DFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFIC
TTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGELK
*

LD35248.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
cyp33-PA 300 CG4886-PA 1..300 1..300 1600 100 Plus
CG7768-PB 164 CG7768-PB 4..164 139..299 625 70.8 Plus
CG7768-PA 164 CG7768-PA 4..164 139..299 625 70.8 Plus
Cyp1-PA 227 CG9916-PA 59..227 133..299 611 68.6 Plus
CG2852-PD 205 CG2852-PD 18..190 121..299 481 54.4 Plus