Clone LD35257 Report

Search the DGRC for LD35257

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:352
Well:57
Vector:pOT2
Associated Gene/TranscriptCG1234-RA
Protein status:LD35257.pep: gold
Preliminary Size:2664
Sequenced Size:2575

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1234 2001-01-01 Release 2 assignment
CG1234 2001-07-04 Blastp of sequenced clone
CG1234 2003-01-01 Sim4 clustering to Release 3
CG1234 2008-04-29 Release 5.5 accounting
CG1234 2008-08-15 Release 5.9 accounting
CG1234 2008-12-18 5.12 accounting

Clone Sequence Records

LD35257.complete Sequence

2575 bp (2575 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051854

> LD35257.complete
TTCCATGTGCTCGTCCCATTCAGAAGGCAACATTTGTGAAAATTAACTAT
TAGTTGACTAAAACGGGTGCAATGGGAACTAAAAAGGTCAAAATCAGCTC
GGTCAAGCGGGCTGCTCACCTGAAGTCGAAAAAAACACCGCTTTCTAAGC
AGCAGCAACAAAAACAGAAGCAAAAGCGCGACCAACTGAAATCGAAGCGC
GAACAGGGTCAGAATATATTCTCCCAAAAGGCGAGAAAGCGGGACAACTT
AGCACAGCGTAAAAAGCACAACAAATTGGCCTCCCTGGGCTTGGATCCGC
TCGAGGAAGACAACGAGGATGGCGACGATGAGATGCTTGAAAACGTTGCG
GACATGCTGGATGGCGATGATCTTGCCCTGCTCCAGGCTAACAAACGCAA
GCGAAAGGCCAAGACGACCGGCGAGAATGATCCTGACCAAGGACAATCCA
TCGGCTTGGAAAGGGCCTATGCCTCTGACACGAAAAAAGAGCAGGACGCG
CAAAAAATAAAGTTGGATTTGCTGCCAATCAAGTCCAGGGATGGTCAGAT
TATCACCCGTACGACAGAGGTGGATTACATACCTAAGCCCAAGCAGAAAA
AGAAGAATGAAGAAGAAGAGGAGGATGATTCCGAGGAAGACGGTGATACG
GAGTATGAGGACAGCGATGACGATGTGGTCAATGATGTCGAGGCCGCCAC
CGCCGCTCCCGTCCAAAAACTTATCTCTACCACGGATCTACTTATTGCCC
GGCAGCAGGAGATCGAACGCCAGAAGTATCGCATTGGAATCATTTGTTCC
GGGCTGCTCGAAAAGCCAGAGGATAAGATGCGCAACTTTCATGCTCTGTA
CGAACTCATGGACGAAATCAACCCAGCCAGTCGACAGGCCAACCTAATGG
CCGTCAGAAAGCTGGCCATAATCTCTGTCACCGAGATATTCAAAGATATC
TTGCCCGAGTATCGAGTGGGTCAGGTCGACACCAAGATGCAGACGCTTCG
CAAGGCCACTCTTGATCGTGTAACCTTTGAAAACGCCTTGCTTCAACAGT
TTAAAAAGTTCCTGCAGAAACTGGAACAGATCACAGCGCAAGTTAACAGG
AGAGGTGGTCTAAGGACGCCTCAGACTGTGAAGTTGGCCACCGTGGCAGT
ACAGTGCATGTGTGACTTGCTTGTGGCACATCCATACTTTAACTACGTTC
AAAACATTGCCCAGCTTCTGGTGTATATGCTGAATTGCAATTATGCAGAG
ATGCGAACGGCGGTCCATCAGTGCTTCCGCACAGTCTTTTCCAACGACAA
ACGGTTAGAAATGACTCTTTTTATAGTGCGACGCATCAATCACTTGATCA
AAACGAAGCAGAACAATGTTCATGTGGAGTGCATCACCTGTCTGATGGGC
CTTAAAATCAAGAACGTAAACCTAGATGCCGAAAAGGAGAATGAGCTAAA
GCAAAAGAAGCTTGAGTCGCATCGTCAACGCTTACTAAGCTTGTCCAAGA
AAGAGCGCAAAAGACGTAAGAAGCTCACCGAGGTTAACAGAGAACTAGAG
GAAACCCGTGCCGAGGAAAACAAGCAAGCAAAGCATCAGAAGCTCACCGA
GATCATAAAGATGGTGTTTACCATTTACTTCCGCGTGCTTAAGAACGATC
CCACCTCCCGCGTGCTGAGCGCTATTCTAGAAGGATTGGCAGAGTTTGCG
CACGTCATTAATTTGGACTTCTTCTCCGATCTAATCGATGTGCTCAACCG
CATTCTAGAGGACCAAGACGAGCTGGGCTACCGGGAGCGATTGCACTGTG
TTCAGACCATATTCGTTATCCTTTCCGGCCAGGGTGAGGTGCTAAACATC
GACCCCATCCGATTCTACCAGCACTTTTACCGAAATATGCTGGCGGTGCA
GGCAGGCAAAAATCACGATGACTTCGCCATTATTTTGCGAACTTTGGATG
AGGTGCTCGTAAAGCGTCGTCGCAATATGAGCCAGCAGCGTCTAATGGCC
TTCATGAAACGCTTGCTTACTGGAAGTCTGCATCTGCTCCATAATGGCAC
CCTGGCCACGCTTGGCACAATAAAACAAACCTTCCAGCTCACTTCTGTGC
TTGACAACCTATTGGATACAGACACTACGATAGGCTCTGGTCGTTACGAT
CCCGAACTGGACGATCCTGAGTACTGTAACGCAGCAAGCACAGCGCTGTA
TGAGCTTGCGCTTCTGGCACGTCACTATCATCCCACGGTGCGACGGATGG
CCGTTCACATTGCTCATGGAGTGCCAGCAACGGGCGAGGGAGCTTTGCCC
ACGGAAATTGGCAAACTTACCTCCCACGAGCTGTTTACGCAATTCGACAG
CACTCAGATGGCTTTCAATCCGACAATACCGCTGCCAAAAGCGGGTCAAC
CAAAACTAAAAAGGGGCAAACACTTATATATTCGCTCGGACTTCAAACAG
GAGTACGGAAAACTGCTGCAGCAAGGAAAAGTTTCACAGACGAAGGATAA
ACAAACCTTACAAATTGATTTTTTCAGTGCACTTCAATAAAGAAAAATTT
GAAGATTAAAAAAAAAAAAAAAAAA

LD35257.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1234-RA 2733 CG1234-RA 107..2663 1..2557 12785 100 Plus
CG1234.a 2650 CG1234.a 42..2592 1..2557 12670 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3071292..3072906 1695..81 8060 99.9 Minus
chr3R 27901430 chr3R 3070612..3071235 2317..1694 3120 100 Minus
chr3R 27901430 chr3R 3070316..3070555 2557..2318 1200 100 Minus
chr3R 27901430 chr3R 3072959..3073038 80..1 400 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7245208..7246822 1695..81 8075 100 Minus
3R 32079331 3R 7244528..7245151 2317..1694 3120 100 Minus
3R 32079331 3R 7244232..7244471 2557..2318 1200 100 Minus
3R 32079331 3R 7246875..7246954 80..1 400 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6986039..6987653 1695..81 8075 100 Minus
3R 31820162 3R 6985359..6985982 2317..1694 3120 100 Minus
3R 31820162 3R 6985063..6985302 2557..2318 1200 100 Minus
3R 31820162 3R 6987706..6987785 80..1 400 100 Minus
Blast to na_te.dros performed 2019-03-15 22:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6786 148..214 119 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2631..2677 147..196 117 74 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6835 148..206 115 66.1 Plus

LD35257.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:28:48 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3070316..3070555 2318..2557 100 <- Minus
chr3R 3070612..3071235 1694..2317 100 <- Minus
chr3R 3071294..3072906 81..1693 97 <- Minus
chr3R 3072959..3073038 1..80 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:25 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
CG1234-RA 1..2469 72..2540 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:18:16 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
CG1234-RA 1..2469 72..2540 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:20:58 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
CG1234-RA 1..2469 72..2540 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:50 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
CG1234-RA 1..2469 72..2540 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:23:51 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
CG1234-RA 1..2469 72..2540 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:13:26 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
CG1234-RA 14..2570 1..2557 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:18:16 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
CG1234-RA 42..2598 1..2557 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:20:58 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
CG1234-RA 16..2572 1..2557 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:51 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
CG1234-RA 14..2570 1..2557 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:23:51 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
CG1234-RA 16..2572 1..2557 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:48 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7244232..7244471 2318..2557 100 <- Minus
3R 7244528..7245151 1694..2317 100 <- Minus
3R 7245210..7246822 81..1693 100 <- Minus
3R 7246875..7246954 1..80 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:48 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7244232..7244471 2318..2557 100 <- Minus
3R 7244528..7245151 1694..2317 100 <- Minus
3R 7245210..7246822 81..1693 100 <- Minus
3R 7246875..7246954 1..80 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:48 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7244232..7244471 2318..2557 100 <- Minus
3R 7244528..7245151 1694..2317 100 <- Minus
3R 7245210..7246822 81..1693 100 <- Minus
3R 7246875..7246954 1..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:20:58 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3069954..3070193 2318..2557 100 <- Minus
arm_3R 3070250..3070873 1694..2317 100 <- Minus
arm_3R 3070932..3072544 81..1693 100 <- Minus
arm_3R 3072597..3072676 1..80 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:28:03 Download gff for LD35257.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6985063..6985302 2318..2557 100 <- Minus
3R 6985359..6985982 1694..2317 100 <- Minus
3R 6986041..6987653 81..1693 100 <- Minus
3R 6987706..6987785 1..80 100   Minus

LD35257.pep Sequence

Translation from 71 to 2539

> LD35257.pep
MGTKKVKISSVKRAAHLKSKKTPLSKQQQQKQKQKRDQLKSKREQGQNIF
SQKARKRDNLAQRKKHNKLASLGLDPLEEDNEDGDDEMLENVADMLDGDD
LALLQANKRKRKAKTTGENDPDQGQSIGLERAYASDTKKEQDAQKIKLDL
LPIKSRDGQIITRTTEVDYIPKPKQKKKNEEEEEDDSEEDGDTEYEDSDD
DVVNDVEAATAAPVQKLISTTDLLIARQQEIERQKYRIGIICSGLLEKPE
DKMRNFHALYELMDEINPASRQANLMAVRKLAIISVTEIFKDILPEYRVG
QVDTKMQTLRKATLDRVTFENALLQQFKKFLQKLEQITAQVNRRGGLRTP
QTVKLATVAVQCMCDLLVAHPYFNYVQNIAQLLVYMLNCNYAEMRTAVHQ
CFRTVFSNDKRLEMTLFIVRRINHLIKTKQNNVHVECITCLMGLKIKNVN
LDAEKENELKQKKLESHRQRLLSLSKKERKRRKKLTEVNRELEETRAEEN
KQAKHQKLTEIIKMVFTIYFRVLKNDPTSRVLSAILEGLAEFAHVINLDF
FSDLIDVLNRILEDQDELGYRERLHCVQTIFVILSGQGEVLNIDPIRFYQ
HFYRNMLAVQAGKNHDDFAIILRTLDEVLVKRRRNMSQQRLMAFMKRLLT
GSLHLLHNGTLATLGTIKQTFQLTSVLDNLLDTDTTIGSGRYDPELDDPE
YCNAASTALYELALLARHYHPTVRRMAVHIAHGVPATGEGALPTEIGKLT
SHELFTQFDSTQMAFNPTIPLPKAGQPKLKRGKHLYIRSDFKQEYGKLLQ
QGKVSQTKDKQTLQIDFFSALQ*

LD35257.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17313-PA 825 GF17313-PA 1..825 1..822 3625 86.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25293-PA 822 GG25293-PA 1..822 1..822 4276 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19284-PA 829 GH19284-PA 1..826 1..821 3347 80.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1234-PA 822 CG1234-PA 1..822 1..822 4176 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23496-PA 828 GI23496-PA 1..825 1..821 3433 81 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12190-PA 826 GL12190-PA 1..826 1..822 3548 82.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11564-PA 826 GA11564-PA 1..826 1..822 3549 83 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10495-PA 823 GM10495-PA 1..823 1..822 4314 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19492-PA 823 GD19492-PA 1..823 1..822 4297 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10246-PA 825 GJ10246-PA 1..822 1..821 3499 82.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12258-PA 825 GK12258-PA 1..825 1..822 3282 80.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25803-PA 822 GE25803-PA 1..822 1..822 4238 96.7 Plus

LD35257.hyp Sequence

Translation from 71 to 2539

> LD35257.hyp
MGTKKVKISSVKRAAHLKSKKTPLSKQQQQKQKQKRDQLKSKREQGQNIF
SQKARKRDNLAQRKKHNKLASLGLDPLEEDNEDGDDEMLENVADMLDGDD
LALLQANKRKRKAKTTGENDPDQGQSIGLERAYASDTKKEQDAQKIKLDL
LPIKSRDGQIITRTTEVDYIPKPKQKKKNEEEEEDDSEEDGDTEYEDSDD
DVVNDVEAATAAPVQKLISTTDLLIARQQEIERQKYRIGIICSGLLEKPE
DKMRNFHALYELMDEINPASRQANLMAVRKLAIISVTEIFKDILPEYRVG
QVDTKMQTLRKATLDRVTFENALLQQFKKFLQKLEQITAQVNRRGGLRTP
QTVKLATVAVQCMCDLLVAHPYFNYVQNIAQLLVYMLNCNYAEMRTAVHQ
CFRTVFSNDKRLEMTLFIVRRINHLIKTKQNNVHVECITCLMGLKIKNVN
LDAEKENELKQKKLESHRQRLLSLSKKERKRRKKLTEVNRELEETRAEEN
KQAKHQKLTEIIKMVFTIYFRVLKNDPTSRVLSAILEGLAEFAHVINLDF
FSDLIDVLNRILEDQDELGYRERLHCVQTIFVILSGQGEVLNIDPIRFYQ
HFYRNMLAVQAGKNHDDFAIILRTLDEVLVKRRRNMSQQRLMAFMKRLLT
GSLHLLHNGTLATLGTIKQTFQLTSVLDNLLDTDTTIGSGRYDPELDDPE
YCNAASTALYELALLARHYHPTVRRMAVHIAHGVPATGEGALPTEIGKLT
SHELFTQFDSTQMAFNPTIPLPKAGQPKLKRGKHLYIRSDFKQEYGKLLQ
QGKVSQTKDKQTLQIDFFSALQ*

LD35257.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1234-PA 822 CG1234-PA 1..822 1..822 4176 100 Plus