Clone LD35279 Report

Search the DGRC for LD35279

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:352
Well:79
Vector:pOT2
Associated Gene/TranscriptCG4709-RA
Protein status:LD35279.pep: gold
Preliminary Size:1678
Sequenced Size:1623

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4709 2001-01-01 Release 2 assignment
CG4709 2001-09-19 Blastp of sequenced clone
CG4709 2003-01-01 Sim4 clustering to Release 3
CG4709 2008-04-29 Release 5.5 accounting
CG4709 2008-08-15 Release 5.9 accounting
CG4709 2008-12-18 5.12 accounting

Clone Sequence Records

LD35279.complete Sequence

1623 bp (1623 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058650

> LD35279.complete
CTCCTTAGAATCTGAAAACAAACTTGCCATCAGCACTATGTTGTAAATAA
TAAATTTAAAGAATAATGGAAGAATACGAAGCACAATTGCTCGTTGTGGA
GCAGGCATTGGAAAATGCCGCGGATGATGCGCAACGCCAGGATCTTTTGG
CCCTAAAGAACAATCTGCAGGAGCTGTTGGCCCTCACCCGGGAATCAGGA
GATGAAGCACCAATCGATGAACTACCTCAGCAGGGCGACAATCTGGATGA
TGAGCTGCAGCGGCTCAAAAGCGAACTTAATGACCTAGAGGCGGCCGGCT
CCTCACAAACCGCGTTGGATGAAGAACGCCAGCTGGCTGACTTGCGAACC
AAGTACACCGCCATGGTGGGCGAGAAGTGCTCCGCACCACACGAGCACAG
TTGGGGCACCTGCTACCACAATGCCCTCATCTGCGGAGTGGACGACGAGG
TGGTTATGAACAGCGAAGGCGTCTTGGATGCTCGACTAAGGGTTCTCTTT
ACGAATCCCACGCATCGAGAAATGCTGCCCTGTTCGTATTACCTCGAAGG
CGAGTGCCGCTTTGATGAGGCCAAGTGTCGCTTTTCCCATGGCGCCCTTG
TCACCGGTAGCTCCATTAGAAAATATAATCCACCCGATTTCCACAAACTC
TCCCGCAGTCGTCCAGTTTTTGCCCTGCTACCAGATCGATTGTGGCATCG
AGGTCGTGTCCTTTGTGTAAATTTCGTAGAGCAGATATGCCGCGTCCGCT
TGGATGGGCAGGATCACAAGGAGCGGGAACGAGACTTCAAGTTCGAAGAA
CTGTATCCACTTACCACCGATCAGGATGAGGATGACGAGCTCTCCAGCGA
GGAGAGCAACTCCAGCATGAACGACAACAGCAGTGACGAGGCGGAGTCGG
ATATGGATGATCTGGAGGAAGCTAGAAGAGCACGCATGGTCGAGTTGAGT
TTGTTTACCTTTAAGCCGACGGAACGACTTGGCGCCTGGGAGGAGTTCAC
ACGGGGCATCGGCTCTAAGCTTATGGAGAAAATGGGTTACATCCATGGTA
CTGGTCTTGGCTCAGATGGAAGGGGAATCGTCACCCCGGTAAGCGCCCAG
ATACTTCCCCAGGGTCGATCTCTAGATGCCTGCATGGAGCTGCGTGAGGC
CGCCAACGGGGACAAGGATTATTTTAGCGTGGAACGAAAGCTAAAGCGCG
CCCAGCGACGACAGCGAAAGGCTGATGAGAAGGCCTACGTCCGTGAGTCA
CAACGTGTGGATGTCTTTACATTCTTAAACGACAGTGTTTTGGGGCCTGG
AGAAAGCACTCAGCAAGGCGAGCAGGTGACCAAGAAAGCTAAGACCAACG
AGCTACAGCAGCACTCAACCAAAACTCTTAACGTGGAAACAGTGCGAATT
GCTGATGAAATCCGCCGAAAGCAAAGAGATATGGCCAAGGTTAAACAGTC
CCTGGACCGGAATTCTGGAGATGCGCAGCTCCAGAAGCGACTACAAGTGC
AGATGCAAAGCCACAAACAGGAGCTAGCCACGCTGCAGGCACAGGAACGC
AGCTTAAGCAAGGAACAGCAGACGCGTAAAAGCAAGAATAAAATGTTTGA
GTTTTAAAAAAAAAAAAAAAAAA

LD35279.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-RA 1734 CG4709-RA 125..1731 1..1607 8035 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9953523..9954445 83..1005 4600 99.9 Plus
chr2L 23010047 chr2L 9954504..9955105 1004..1605 3010 100 Plus
chr2L 23010047 chr2L 9953380..9953465 1..86 430 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9954592..9955514 83..1005 4600 99.9 Plus
2L 23513712 2L 9955573..9956176 1004..1607 3020 100 Plus
2L 23513712 2L 9954449..9954534 1..86 430 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9954592..9955514 83..1005 4600 99.8 Plus
2L 23513712 2L 9955573..9956176 1004..1607 3020 100 Plus
2L 23513712 2L 9954449..9954534 1..86 430 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:55:07 has no hits.

LD35279.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:56:00 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9953380..9953465 1..86 100 -> Plus
chr2L 9953527..9954444 87..1004 100 -> Plus
chr2L 9954505..9955105 1005..1605 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:26 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 1..1540 66..1605 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:44 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 1..1540 66..1605 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:39 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 1..1542 66..1607 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:10 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 1..1540 66..1605 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:24:57 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 1..1542 66..1607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:19 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 1..1605 1..1605 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:44 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 1..1605 1..1605 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:39 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RB 125..1729 1..1605 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:10 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 1..1605 1..1605 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:24:57 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RB 125..1729 1..1605 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:00 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9954449..9954534 1..86 100 -> Plus
2L 9954596..9955513 87..1004 100 -> Plus
2L 9955574..9956174 1005..1605 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:00 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9954449..9954534 1..86 100 -> Plus
2L 9954596..9955513 87..1004 100 -> Plus
2L 9955574..9956174 1005..1605 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:00 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9954449..9954534 1..86 100 -> Plus
2L 9954596..9955513 87..1004 100 -> Plus
2L 9955574..9956174 1005..1605 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:39 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9954449..9954534 1..86 100 -> Plus
arm_2L 9954596..9955513 87..1004 100 -> Plus
arm_2L 9955574..9956174 1005..1605 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:40 Download gff for LD35279.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9954596..9955513 87..1004 100 -> Plus
2L 9955574..9956174 1005..1605 100   Plus
2L 9954449..9954534 1..86 100 -> Plus

LD35279.pep Sequence

Translation from 65 to 1606

> LD35279.pep
MEEYEAQLLVVEQALENAADDAQRQDLLALKNNLQELLALTRESGDEAPI
DELPQQGDNLDDELQRLKSELNDLEAAGSSQTALDEERQLADLRTKYTAM
VGEKCSAPHEHSWGTCYHNALICGVDDEVVMNSEGVLDARLRVLFTNPTH
REMLPCSYYLEGECRFDEAKCRFSHGALVTGSSIRKYNPPDFHKLSRSRP
VFALLPDRLWHRGRVLCVNFVEQICRVRLDGQDHKERERDFKFEELYPLT
TDQDEDDELSSEESNSSMNDNSSDEAESDMDDLEEARRARMVELSLFTFK
PTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQG
RSLDACMELREAANGDKDYFSVERKLKRAQRRQRKADEKAYVRESQRVDV
FTFLNDSVLGPGESTQQGEQVTKKAKTNELQQHSTKTLNVETVRIADEIR
RKQRDMAKVKQSLDRNSGDAQLQKRLQVQMQSHKQELATLQAQERSLSKE
QQTRKSKNKMFEF*

LD35279.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15731-PA 511 GF15731-PA 1..511 1..513 2241 82.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10072-PA 513 GG10072-PA 1..513 1..513 2650 96.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11061-PA 508 GH11061-PA 1..508 1..513 1911 71.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-PB 513 CG4709-PB 1..513 1..513 2637 100 Plus
CG4709-PA 513 CG4709-PA 1..513 1..513 2637 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17578-PA 509 GI17578-PA 1..509 1..513 1951 72.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18949-PA 509 GL18949-PA 1..509 1..513 2006 75.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18374-PA 509 GA18374-PA 1..509 1..513 2009 75.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17832-PA 513 GM17832-PA 1..513 1..513 2597 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23643-PA 513 GD23643-PA 1..513 1..513 2651 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17921-PA 508 GJ17921-PA 1..508 1..513 1931 71.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18884-PA 513 GE18884-PA 1..513 1..513 2659 96.7 Plus

LD35279.hyp Sequence

Translation from 65 to 1604

> LD35279.hyp
MEEYEAQLLVVEQALENAADDAQRQDLLALKNNLQELLALTRESGDEAPI
DELPQQGDNLDDELQRLKSELNDLEAAGSSQTALDEERQLADLRTKYTAM
VGEKCSAPHEHSWGTCYHNALICGVDDEVVMNSEGVLDARLRVLFTNPTH
REMLPCSYYLEGECRFDEAKCRFSHGALVTGSSIRKYNPPDFHKLSRSRP
VFALLPDRLWHRGRVLCVNFVEQICRVRLDGQDHKERERDFKFEELYPLT
TDQDEDDELSSEESNSSMNDNSSDEAESDMDDLEEARRARMVELSLFTFK
PTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQG
RSLDACMELREAANGDKDYFSVERKLKRAQRRQRKADEKAYVRESQRVDV
FTFLNDSVLGPGESTQQGEQVTKKAKTNELQQHSTKTLNVETVRIADEIR
RKQRDMAKVKQSLDRNSGDAQLQKRLQVQMQSHKQELATLQAQERSLSKE
QQTRKSKNKMFEF

LD35279.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-PB 513 CG4709-PB 1..513 1..513 2637 100 Plus
CG4709-PA 513 CG4709-PA 1..513 1..513 2637 100 Plus