Clone LD35289 Report

Search the DGRC for LD35289

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:352
Well:89
Vector:pOT2
Associated Gene/TranscriptCG8003-RA
Protein status:LD35289.pep: gold
Preliminary Size:1410
Sequenced Size:1363

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8003 2001-01-01 Release 2 assignment
CG8003 2001-10-10 Blastp of sequenced clone
CG8003 2003-01-01 Sim4 clustering to Release 3
CG8003 2008-04-29 Release 5.5 accounting
CG8003 2008-08-15 Release 5.9 accounting
CG8003 2008-12-18 5.12 accounting

Clone Sequence Records

LD35289.complete Sequence

1363 bp (1363 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061422

> LD35289.complete
AAACAGTGGAGTTTCTTGATTTCCATATTCCGAAGAGCACTTGAAAAATC
CAACAAAAACAAACAATCGAATCACAATGACCGAGGAAAGCAAGAAGATC
GTACAGCTGGACGACGTGCAGCGCCAGTTGCTGGATCATCTGGCCAAGAA
TGACACCAGTGGATTCAAGCAGCTGCTGAGCGGAGTGAGGAATGTTAATT
TCGTGGACGACACCGGGATGTCGTGTTTGGCCCACGCCAGCTTCAAGGGA
AACCGCGAGGCGGTGCAGCTGCTCCTGGACATGGGTGCCGACATAAACCT
CAATCAGCATGGAGCTGATTATACGCCACTGCATTTCGCCGCTCTATCGG
GCAATACACATGTGTGCCGGCTTCTTTTGGATGCTGGCATCAAGCCGGGT
AGCATCAATAGTGTCAACAGGACCGCCGCCCAAATGGCCGCCTTTGTGGG
CAACCACGCCTGCGTGGAGACCATCAACAACTATGTGACCCAGTCGAGTT
TGGAGTACTACACCCAAGTGCATGGCCAGCAGACGGAGCCGCATATACCA
CCCAGCTTACTCAAATCGTTCCACGCCTTTGTCACCGAAATCAACCTGCA
TCCCGTGAGGATTGCCCTGAATGTGCAGTCCTTGGGATTGCTTAGGATCC
TGTCCAGTCTGCGCAAGACGCTGGCTTTGATGTGCGAAAAGGAGATGCAG
AAGTCGCATGACCTCAACGAGCTGCTGGCCTTCAAGTTCCATTATCAGGG
CTGGATTTTGGCCGAACTAATACGCTGCGAGGAGCAATTCAAGGCGCAGC
ACAAGGAGAAAAGTGGCGAGGAGGCGGGCGATGCGAACAAGAACGATTTC
ATCGAGATGTTTGTGAAGCGGGTGCTCAAGGAGAACAAGCTGGGCCAGCT
GGACTATGTGGAATACACGTTGCGCGAATGTGCCAGGGAGTTTCCCGTGA
GAGAGTGCACCATCTTCCGGCAAATCGCAACGCAATTTGGCGCCAAGGAT
GCCCCACCAGCACTGACTGTCCTGCGAAATGCCATCAATGGGATGAGGTG
GATTACGGACGAGGGCAACTACTGCAGCACCTGCGGCGCCGAGAAACCGG
ACAAGAAGTGCTCCAAGTGCAAGGCGGTGCAGTATTGCGATCGCGAATGC
CAGCGGCTGCATTGGTTCATGCACAAGAAGAACTGTGCCCGCCTCCTGGC
CCAATCCCAAGCCCAAGCCCAAGCCCAGCCGCAATCGCAAGCGAAGGGAG
CCATTGACACGGCCGAGCTGCGCGAGGAACTGTCCAAACTGACTGCGTAA
TCCTGTGCTCCTTTGTAACGCCAATAAATGTAACATAAAACCAGAAAAAA
AAAAAAAAAAAAA

LD35289.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003.a 1690 CG8003.a 161..1507 1..1347 6735 100 Plus
CG8003-RA 1677 CG8003-RA 148..1494 1..1347 6735 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 10653229..10654004 283..1058 3835 99.6 Plus
chr3L 24539361 chr3L 10654063..10654350 1057..1344 1365 98.3 Plus
chr3L 24539361 chr3L 10652877..10653162 1..284 1300 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:29:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10661849..10662624 283..1058 3880 100 Plus
3L 28110227 3L 10662683..10662973 1057..1347 1455 100 Plus
3L 28110227 3L 10661499..10661782 1..284 1420 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 10654949..10655724 283..1058 3880 100 Plus
3L 28103327 3L 10655783..10656073 1057..1347 1455 100 Plus
3L 28103327 3L 10654599..10654882 1..284 1420 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:04:29 has no hits.

LD35289.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:05:09 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 10652877..10653161 1..283 98 -> Plus
chr3L 10653230..10654003 284..1057 99 -> Plus
chr3L 10654064..10654350 1058..1344 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:28 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 1..1224 77..1300 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:13 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 1..1224 77..1300 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:52:03 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 1..1224 77..1300 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:14 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 1..1224 77..1300 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:26:02 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 1..1224 77..1300 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:37 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 21..1364 1..1344 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:13 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 21..1364 1..1344 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:03 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 25..1368 1..1344 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:15 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 21..1364 1..1344 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:26:02 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 25..1368 1..1344 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:05:09 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10661499..10661781 1..283 100 -> Plus
3L 10661850..10662623 284..1057 100 -> Plus
3L 10662684..10662970 1058..1344 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:05:09 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10661499..10661781 1..283 100 -> Plus
3L 10661850..10662623 284..1057 100 -> Plus
3L 10662684..10662970 1058..1344 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:05:09 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10661499..10661781 1..283 100 -> Plus
3L 10661850..10662623 284..1057 100 -> Plus
3L 10662684..10662970 1058..1344 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:03 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10654599..10654881 1..283 100 -> Plus
arm_3L 10654950..10655723 284..1057 100 -> Plus
arm_3L 10655784..10656070 1058..1344 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:22 Download gff for LD35289.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10654599..10654881 1..283 100 -> Plus
3L 10654950..10655723 284..1057 100 -> Plus
3L 10655784..10656070 1058..1344 100   Plus

LD35289.pep Sequence

Translation from 76 to 1299

> LD35289.pep
MTEESKKIVQLDDVQRQLLDHLAKNDTSGFKQLLSGVRNVNFVDDTGMSC
LAHASFKGNREAVQLLLDMGADINLNQHGADYTPLHFAALSGNTHVCRLL
LDAGIKPGSINSVNRTAAQMAAFVGNHACVETINNYVTQSSLEYYTQVHG
QQTEPHIPPSLLKSFHAFVTEINLHPVRIALNVQSLGLLRILSSLRKTLA
LMCEKEMQKSHDLNELLAFKFHYQGWILAELIRCEEQFKAQHKEKSGEEA
GDANKNDFIEMFVKRVLKENKLGQLDYVEYTLRECAREFPVRECTIFRQI
ATQFGAKDAPPALTVLRNAINGMRWITDEGNYCSTCGAEKPDKKCSKCKA
VQYCDRECQRLHWFMHKKNCARLLAQSQAQAQAQPQSQAKGAIDTAELRE
ELSKLTA*

LD35289.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10604-PA 407 GF10604-PA 1..407 1..407 1851 87.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15447-PA 403 GG15447-PA 1..403 1..407 2079 95.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14954-PA 399 GH14954-PA 3..399 10..407 1717 79.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-PB 407 CG8003-PB 1..407 1..407 2128 100 Plus
CG8003-PA 407 CG8003-PA 1..407 1..407 2128 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11481-PA 401 GI11481-PA 1..401 1..407 1724 78.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15477-PA 289 GL15477-PA 1..264 1..265 1134 78.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20758-PA 404 GA20758-PA 1..404 1..407 1783 80.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25221-PA 407 GM25221-PA 1..407 1..407 2141 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14254-PA 407 GD14254-PA 1..407 1..407 2149 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13675-PA 401 GJ13675-PA 1..401 1..407 1749 79.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12277-PA 401 GK12277-PA 1..401 1..407 1745 79.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21757-PA 403 GE21757-PA 1..403 1..407 2063 94.1 Plus

LD35289.hyp Sequence

Translation from 76 to 1299

> LD35289.hyp
MTEESKKIVQLDDVQRQLLDHLAKNDTSGFKQLLSGVRNVNFVDDTGMSC
LAHASFKGNREAVQLLLDMGADINLNQHGADYTPLHFAALSGNTHVCRLL
LDAGIKPGSINSVNRTAAQMAAFVGNHACVETINNYVTQSSLEYYTQVHG
QQTEPHIPPSLLKSFHAFVTEINLHPVRIALNVQSLGLLRILSSLRKTLA
LMCEKEMQKSHDLNELLAFKFHYQGWILAELIRCEEQFKAQHKEKSGEEA
GDANKNDFIEMFVKRVLKENKLGQLDYVEYTLRECAREFPVRECTIFRQI
ATQFGAKDAPPALTVLRNAINGMRWITDEGNYCSTCGAEKPDKKCSKCKA
VQYCDRECQRLHWFMHKKNCARLLAQSQAQAQAQPQSQAKGAIDTAELRE
ELSKLTA*

LD35289.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-PB 407 CG8003-PB 1..407 1..407 2128 100 Plus
CG8003-PA 407 CG8003-PA 1..407 1..407 2128 100 Plus