Clone LD35507 Report

Search the DGRC for LD35507

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:355
Well:7
Vector:pOT2
Associated Gene/TranscriptCG7456-RA
Protein status:LD35507.pep: gold
Preliminary Size:2702
Sequenced Size:2626

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7456 2001-01-01 Release 2 assignment
CG7456 2001-09-19 Blastp of sequenced clone
CG7456 2003-01-01 Sim4 clustering to Release 3
CG7456 2008-04-29 Release 5.5 accounting
CG7456 2008-08-15 Release 5.9 accounting
CG7456 2008-12-18 5.12 accounting

Clone Sequence Records

LD35507.complete Sequence

2626 bp (2626 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058656

> LD35507.complete
AATTCATCCAATTGGAAAAAGAGATCAAGAAATTTAACAAAGATCCGGAA
ATCCGGACCGACGGCAGCGGAATGAGTGTTCTGGAACAGCTGGGTGCTCT
AGATATCGGTACAAATGAGCAGGTGGACGAAACGCTGCAGCGGATTGCCG
ACGAAGAGGCAAAAGTTAACGAGAAACTGGAGTCGCTGCTGGCCAAACAA
TGCCAGATTGAGGCCAAAATGAGTGGCATTGGGCGATCACTCAGCCTGCT
TCACACGGTGGACAGCGATTCCAACAAGCTGAACGACCAGATCGTAAACA
CTGCCCAGTTGGCCGAATCGGTGAGCGCCAAGGTGCGCCGTTTGGATTTG
GCCAGGTGCCGTGCCTCCGAGTGCCAGCAGCGGGTGCACGATCTGATCGA
CCTGCATCTGTGTAGCCAGGGCGTGGTGAAGGCCATCGGCGAGGAGGACT
ACGAGAAGAGTGCCACCCACATTGCCCGCTTCCTGGCGATGGATCAGCAA
TTGCTGCGGCGCACCGCCGACGACGTTCAGGGCTCCATAACGTCGGTTAG
CGATGCGGTCAAGACGCTGGAGGATGCCACCGAGAAGACCCGCGTGCTGA
TTGCCAAGCGCTTCGATGAGGCAGTCAAAGCCGATGATTTGGCCTCTGTG
GAAAGATTCTTCAAAATCTTTCCACTAGTCGGTTGCCATCGCACCGGAAT
CGAAAAGTTCTCGCTCTACATTTGCCAAAAGCTGGCAAACAAGGCGCAGA
AGGAACTAAGGAACGCCCAGGACATAGCCAAGGCGGAATCGCGCCTGCAA
TTGGCCTACGCAGATCGGCTGACTGCTATTTTGGAAAACTTCGCCAGGGT
GGTGGAAGTCAATCAGCCGATAATCGAAGCCTTTTACGGACAAGCTTCAT
CATCACTCATCGACATGGTGTCCATACTGCAGCACGAATGCGATACGGAG
GTGAAGAATCTTCTAATGGAGTTCAACAAGAACCGGCAGATCCAGTACCG
CAGCAAGCAAGTAAATGAATCCACTCAGCGGTCGGCCGGTGGCGGAAATC
TCGGGAGCAACAGCATCCAAGCACTGGGTCATTATAGGAAACCATCTGGC
GGCTCGGTGGACAAGCTAAATCCCAAGGAAATCGATGCCATTATAGCTGA
AATAACCGTCATGCACGCCAGGGTCGAGTTGTACTTCCGATTTATGCGTC
GGCGCCTACAGGTACATGTGGAGACGTGTGTGCCGGAAAAGGAGCAGTTT
GATATAATGGAACGCTATGAGAAGATCATGAAGAACTCCGATCTGCGCCG
CCAAATGCAGGAAATTCTGAGCACCTATTTGCTGCTGGAAAGATATTTCA
TGGAGGAGAGCGTACTGAAGGCCATCGGCTTGGACACCTATGAGTCTGGG
CAGCAGTGTTCGTCCATGGTGGACGATGTGTTCTTCATTCTTCGCAAATC
CATTCGCAGGGCTCTGACAACCCAATCGATAAACGGAACCTGTGCTGTGA
TCAACAACGTGGCTGCCTGCCTGGATGGTGATTTTGTGAACGCACTGAAG
GCGCCCTTGAAAAGCGGCTATCCCTCGGGCTACATCGACTTGGCCCAGGC
ATATAATGCTATACAAACATCGCTGCAGCAGGGAAAACTACATTCCAGTG
ATGCCGATCGAGGTCGAGCCAATTTCTTGGTTCAGCTGAACAATGCCGAC
ATATCGACAGAGTATATTGAGACCTTGTGTCAGACGATGGAACAGGAAAT
TGCTGGCACATTTCCACAAACGACCCAGGTGGAGCGTCAAATGCTGGACA
GTTGCCTCACGGAACTTAAAGCTGTGCGGGACGCGTTGAAAGCCACCGTT
GATTTTGGAATGCAGCAGCTGCGATCCAGTGTCATAAAGCCACGCCTTAA
TCCCTGGATCAATCAGTTCCTGAACTACAGTCACAATTTGAATGAGGAGG
AACTTGCTGCTTACGAAGCTGGGGAGACATTTGTCCAGTTCTTCATAGTG
CAATTGGATGGACTACTTAACTCTTTTAAGAACTCGTTGAGTCCGCGCAA
CTATGATGCACTCGTTAGCATTTTGGCGACCGAAGTGACTATTCAATTGG
AACGGGCTATTAAGAAAATCAGCTTTAATAGACTTGGCGGTTTGGTGCTT
GATCAGGAAGTTCGTGCCTTGGGAAGTTATCTAACAGGAGCTACATCGTG
GTCGGTTCGAGATAAGATGACACGTATATCCCAAATAGCTACGCTCCTCA
ATCTGGACAAGATTACGGAGCTATCGGAGTACTGGAATCCGGAGAATAAC
AAAGAGATGTCATCTTGGCATCTCACACCTAACGAAGTTCGCACATTTTT
AACGTTAAGAAATGACTTTCGTATAGAAGACATTAAGCGGCTACAACTTT
AGGCAAAAACATCGTATTCATGCGGACGTATTATGACTGGCACTGAACCA
ACAATTGAAATCCAAACGCAAAAGCAGCTGCGAAAGCGGACCCAAACAAG
AAGCTGATTTTACATCGACTAATAGTTGGATAAGGCTCGCAATTTGAACA
CCAAAACTATAAGAAAACAACGTTTTATTATTATACAATAATAACCCACT
TATCCAAAATGTAAAAAAAAAAAAAA

LD35507.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7456-RA 2752 CG7456-RA 138..2752 1..2615 13075 100 Plus
Grip75-RA 2221 Grip75-RA 1936..2136 2558..2358 1005 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10486445..10487183 895..157 3680 99.9 Minus
chr2L 23010047 chr2L 10485225..10485831 1947..1341 2975 99.3 Minus
chr2L 23010047 chr2L 10486071..10486387 1212..896 1570 99.7 Minus
chr2L 23010047 chr2L 10484366..10484620 2612..2358 1275 100 Minus
chr2L 23010047 chr2L 10484683..10484909 2359..2133 1135 100 Minus
chr2L 23010047 chr2L 10484980..10485167 2132..1945 940 100 Minus
chr2L 23010047 chr2L 10487238..10487396 159..1 765 98.7 Minus
chr2L 23010047 chr2L 10485890..10486023 1342..1209 655 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10487617..10488355 895..157 3695 100 Minus
2L 23513712 2L 10486397..10487003 1947..1341 3035 100 Minus
2L 23513712 2L 10487243..10487559 1212..896 1585 100 Minus
2L 23513712 2L 10485535..10485792 2615..2358 1290 100 Minus
2L 23513712 2L 10485855..10486081 2359..2133 1135 100 Minus
2L 23513712 2L 10486152..10486339 2132..1945 940 100 Minus
2L 23513712 2L 10488410..10488568 159..1 795 100 Minus
2L 23513712 2L 10487062..10487195 1342..1209 670 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10487617..10488355 895..157 3695 100 Minus
2L 23513712 2L 10486397..10487003 1947..1341 3035 100 Minus
2L 23513712 2L 10487243..10487559 1212..896 1585 100 Minus
2L 23513712 2L 10485535..10485792 2615..2358 1290 100 Minus
2L 23513712 2L 10485855..10486081 2359..2133 1135 100 Minus
2L 23513712 2L 10486152..10486339 2132..1945 940 100 Minus
2L 23513712 2L 10488410..10488568 159..1 795 100 Minus
2L 23513712 2L 10487062..10487195 1342..1209 670 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:39:26 has no hits.

LD35507.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:40:21 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10487239..10487396 1..158 98   Minus
chr2L 10484683..10484909 2133..2359 100 <- Minus
chr2L 10484980..10485165 1947..2132 100 <- Minus
chr2L 10484366..10484618 2360..2612 100 <- Minus
chr2L 10485226..10485829 1343..1946 99 <- Minus
chr2L 10485890..10486020 1212..1342 99 <- Minus
chr2L 10486072..10486387 896..1211 99 <- Minus
chr2L 10486445..10487181 159..895 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:44 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
CG7456-RA 1..2331 72..2402 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:31 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
CG7456-RA 1..2331 72..2402 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:00:05 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
CG7456-RA 1..2331 72..2402 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:55 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
CG7456-RA 1..2331 72..2402 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:43 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
CG7456-RA 1..2331 72..2402 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:59 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
CG7456-RA 56..2667 1..2612 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:31 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
CG7456-RA 56..2667 1..2612 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:05 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
CG7456-RA 55..2666 1..2612 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:55 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
CG7456-RA 56..2667 1..2612 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:43 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
CG7456-RA 55..2666 1..2612 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:40:21 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10485855..10486081 2133..2359 100 <- Minus
2L 10486152..10486337 1947..2132 100 <- Minus
2L 10485538..10485790 2360..2612 100 <- Minus
2L 10486398..10487001 1343..1946 100 <- Minus
2L 10487062..10487192 1212..1342 100 <- Minus
2L 10487244..10487559 896..1211 100 <- Minus
2L 10487617..10488353 159..895 100 <- Minus
2L 10488411..10488568 1..158 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:40:21 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10485855..10486081 2133..2359 100 <- Minus
2L 10486152..10486337 1947..2132 100 <- Minus
2L 10485538..10485790 2360..2612 100 <- Minus
2L 10486398..10487001 1343..1946 100 <- Minus
2L 10487062..10487192 1212..1342 100 <- Minus
2L 10487244..10487559 896..1211 100 <- Minus
2L 10487617..10488353 159..895 100 <- Minus
2L 10488411..10488568 1..158 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:40:21 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10485855..10486081 2133..2359 100 <- Minus
2L 10486152..10486337 1947..2132 100 <- Minus
2L 10485538..10485790 2360..2612 100 <- Minus
2L 10486398..10487001 1343..1946 100 <- Minus
2L 10487062..10487192 1212..1342 100 <- Minus
2L 10487244..10487559 896..1211 100 <- Minus
2L 10487617..10488353 159..895 100 <- Minus
2L 10488411..10488568 1..158 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:05 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10485538..10485790 2360..2612 100 <- Minus
arm_2L 10485855..10486081 2133..2359 100 <- Minus
arm_2L 10486152..10486337 1947..2132 100 <- Minus
arm_2L 10486398..10487001 1343..1946 100 <- Minus
arm_2L 10487062..10487192 1212..1342 100 <- Minus
arm_2L 10487244..10487559 896..1211 100 <- Minus
arm_2L 10487617..10488353 159..895 100 <- Minus
arm_2L 10488411..10488568 1..158 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:25 Download gff for LD35507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10485538..10485790 2360..2612 100 <- Minus
2L 10485855..10486081 2133..2359 100 <- Minus
2L 10486152..10486337 1947..2132 100 <- Minus
2L 10486398..10487001 1343..1946 100 <- Minus
2L 10487062..10487192 1212..1342 100 <- Minus
2L 10487244..10487559 896..1211 100 <- Minus
2L 10487617..10488353 159..895 100 <- Minus
2L 10488411..10488568 1..158 100   Minus

LD35507.hyp Sequence

Translation from 2 to 2401

> LD35507.hyp
FIQLEKEIKKFNKDPEIRTDGSGMSVLEQLGALDIGTNEQVDETLQRIAD
EEAKVNEKLESLLAKQCQIEAKMSGIGRSLSLLHTVDSDSNKLNDQIVNT
AQLAESVSAKVRRLDLARCRASECQQRVHDLIDLHLCSQGVVKAIGEEDY
EKSATHIARFLAMDQQLLRRTADDVQGSITSVSDAVKTLEDATEKTRVLI
AKRFDEAVKADDLASVERFFKIFPLVGCHRTGIEKFSLYICQKLANKAQK
ELRNAQDIAKAESRLQLAYADRLTAILENFARVVEVNQPIIEAFYGQASS
SLIDMVSILQHECDTEVKNLLMEFNKNRQIQYRSKQVNESTQRSAGGGNL
GSNSIQALGHYRKPSGGSVDKLNPKEIDAIIAEITVMHARVELYFRFMRR
RLQVHVETCVPEKEQFDIMERYEKIMKNSDLRRQMQEILSTYLLLERYFM
EESVLKAIGLDTYESGQQCSSMVDDVFFILRKSIRRALTTQSINGTCAVI
NNVAACLDGDFVNALKAPLKSGYPSGYIDLAQAYNAIQTSLQQGKLHSSD
ADRGRANFLVQLNNADISTEYIETLCQTMEQEIAGTFPQTTQVERQMLDS
CLTELKAVRDALKATVDFGMQQLRSSVIKPRLNPWINQFLNYSHNLNEEE
LAAYEAGETFVQFFIVQLDGLLNSFKNSLSPRNYDALVSILATEVTIQLE
RAIKKISFNRLGGLVLDQEVRALGSYLTGATSWSVRDKMTRISQIATLLN
LDKITELSEYWNPENNKEMSSWHLTPNEVRTFLTLRNDFRIEDIKRLQL*

LD35507.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7456-PA 776 CG7456-PA 1..776 24..799 3895 100 Plus

LD35507.pep Sequence

Translation from 71 to 2401

> LD35507.pep
MSVLEQLGALDIGTNEQVDETLQRIADEEAKVNEKLESLLAKQCQIEAKM
SGIGRSLSLLHTVDSDSNKLNDQIVNTAQLAESVSAKVRRLDLARCRASE
CQQRVHDLIDLHLCSQGVVKAIGEEDYEKSATHIARFLAMDQQLLRRTAD
DVQGSITSVSDAVKTLEDATEKTRVLIAKRFDEAVKADDLASVERFFKIF
PLVGCHRTGIEKFSLYICQKLANKAQKELRNAQDIAKAESRLQLAYADRL
TAILENFARVVEVNQPIIEAFYGQASSSLIDMVSILQHECDTEVKNLLME
FNKNRQIQYRSKQVNESTQRSAGGGNLGSNSIQALGHYRKPSGGSVDKLN
PKEIDAIIAEITVMHARVELYFRFMRRRLQVHVETCVPEKEQFDIMERYE
KIMKNSDLRRQMQEILSTYLLLERYFMEESVLKAIGLDTYESGQQCSSMV
DDVFFILRKSIRRALTTQSINGTCAVINNVAACLDGDFVNALKAPLKSGY
PSGYIDLAQAYNAIQTSLQQGKLHSSDADRGRANFLVQLNNADISTEYIE
TLCQTMEQEIAGTFPQTTQVERQMLDSCLTELKAVRDALKATVDFGMQQL
RSSVIKPRLNPWINQFLNYSHNLNEEELAAYEAGETFVQFFIVQLDGLLN
SFKNSLSPRNYDALVSILATEVTIQLERAIKKISFNRLGGLVLDQEVRAL
GSYLTGATSWSVRDKMTRISQIATLLNLDKITELSEYWNPENNKEMSSWH
LTPNEVRTFLTLRNDFRIEDIKRLQL*

LD35507.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14092-PA 776 GF14092-PA 1..776 1..776 3919 92.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10382-PA 785 GG10382-PA 1..785 1..776 4069 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13296-PA 780 GH13296-PA 8..780 5..776 3395 81.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7456-PA 776 CG7456-PA 1..776 1..776 3895 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18160-PA 771 GI18160-PA 5..771 10..776 3389 82.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19016-PA 419 GL19016-PA 22..419 380..776 1898 87.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20365-PA 419 GA20365-PA 22..419 380..776 1904 87.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11647-PA 776 GM11647-PA 1..776 1..776 4116 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22250-PA 763 GD22250-PA 1..763 1..776 4003 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14587-PA 771 GJ14587-PA 2..771 7..776 3418 82.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15251-PA 776 GK15251-PA 1..776 1..776 3483 83.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13582-PA 776 GE13582-PA 1..776 1..776 4086 97.9 Plus