Clone LD35592 Report

Search the DGRC for LD35592

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:355
Well:92
Vector:pOT2
Associated Gene/TranscriptCG5439-RA
Protein status:LD35592.pep: gold
Preliminary Size:1909
Sequenced Size:1825

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5439 2001-01-01 Release 2 assignment
CG5439 2002-04-04 Blastp of sequenced clone
CG5439 2003-01-01 Sim4 clustering to Release 3
CG5439 2008-04-29 Release 5.5 accounting
CG5439 2008-08-15 Release 5.9 accounting
CG5439 2008-12-18 5.12 accounting

Clone Sequence Records

LD35592.complete Sequence

1825 bp (1825 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095047

> LD35592.complete
TCAAGCAACCAGTGTTGGCACACAACGGAGTGAGAAAAATGAGTAGAAAA
TATAATTAGTTGAATAATAGCCACAAATAATGCCAGAAAATGCATCCAGC
TCGATGCCCACAGAGGCAGGCTTCCGGAGCATGCGCAGCCAACTGGCGGG
CAGCACCTTTGGCCAACGGCGCGAGGACATCTTTCGACGTCTACAGGAAA
GTGCGCATAAAATCTCACAGAAGTTCAGTGGCAAAGAACTTGCCACTGAG
CGGGATGAATCTGTTCAGGAACTGTGCGAATCCCTCGAGGAACTAATGTC
CTACGGACTTAGGCAATCGGCAGGCACTTCCTCCTTCAGCGCCGCCAGCT
TCATCCAGAACATGCAGGAGATGGTGTCCGGAAATGCGGGCGGAGGCAGC
AACAACAATGACGCCACTTTCTGGGAATTCTGCCAGACGCATTTGACGCC
CCACGAACGTCAGAGGTATATGGACCTTAAGCAGATCTGGACGAATGTGG
GCAGAGGACGTGCCTTCATACGCGCCACACTGAACGAGAAGCGACTGCAT
AGCCATGTGCTCACCTGGCTGAGCGACGAGGAGCAGCTGCATCGATTTTA
CACACCTTGGTCCCTGCTACTCAACGATGAGGCGGCCAAGAAGCTGCCAG
AGATCGTAGACTCCCTCAGTGATGTACTGTTCGCCCTCAATGTGGACACC
ACTGAGCTTAATGCACCCAGGAGATCGACGCCAAGTGTTGCCGTCAAAGA
GGAACCAATTATATTCACCACCAGTCCAGTGCCGGTGGTGGGACGCCAAA
AAAGACCTGGTATTGCGGTGGAACGACCCATTGAGTGCGTTAGCTCCACA
GAGGATTTACTTGGTGCTCTAAAGCCCATCGAGTCGGTGGAGGTTCAGCA
AATACTCTCCAAGGAATCCATCGAACAGGAGTTAGCCCAGCCACAGGAAG
AAGTCAACTTGGGTCCCTTCGACCCCATTGAACCCGAGCTGGAGTTTCTC
AAGACGCCCTTGCCAGACATTGGCGCGCATGTTGGAGAGTCAGAGCTCTA
TGAAGACCGAAGCGACACCTCCTCGCAGTGGAGCAAGTCCTCCTCCTCTG
CCAATTGCTTGGCTAACAGCCAACAGCAAGCTGCGCTGGAAGAGCATGTC
AACCAGCTAAACGAAAGATGCGCTCTGCTGGAAACCCGTGTGGCGGAGCT
TAGTCTTCAAAATCGCCTGCTTATCCGAAGGCTAACCAAACAGTTTGAAG
AGACCGGCATCGACCCCAGCTCATCGCTGTGCTCCAATTTCCTGATAACC
ATTCCGCATGTAAAGCTGGCAAAGACACAACGATCTGGTTCCCACTACAC
TTACGAAGTTCACATCACGATGAGGCAGCGTTTGGAGCACTGGACGTTTT
TCAGACGCTACAGCGAGTTCTACAAGCTGCACAAGTCACTGCTTAAGACC
CATCCGGTGGTCAGTGCCGTGGAGTTTCCACCAAAGAAGCATTTCGGCAA
CATGAACCTGGTCTTCGTGGAGGAACGCCGCCAGCAGCTGCAGATTTATC
TGCTCAATCTGGTGGAGACCCTGCCGCAGGTGGAGGCCTGCAAGTCGAAG
GCGGAGCTGCAAAAGGTCTTCCCCTTCTTCAGGGATAGGTAGCAATCTTT
ACCGAATCCAAATTGACAAAGGAAGCTCGAAAAGAACAAGTATTCGCAAC
ATATTTTATCTATTTCGTTGTAGATATCTTTATCTATATGTGTAATAACG
GAGTTGGTCCAAGTGTTGTAATCATTGATATTAAATAAAGTTAAGCCTTT
TTCATCTAAAAAAAAAAAAAAAAAA

LD35592.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5439-RA 1807 CG5439-RA 1..1807 1..1807 9035 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13175859..13177665 1..1807 9035 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13177172..13178979 1..1808 9040 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13177172..13178979 1..1808 9040 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:03:53 has no hits.

LD35592.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:04:56 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13175859..13177665 1..1807 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:46 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
CG5439-RA 1..1563 80..1642 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:16:22 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
CG5439-RA 1..1563 80..1642 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:08:52 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
CG5439-RA 1..1563 80..1642 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:31 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
CG5439-RA 1..1563 80..1642 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:31 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
CG5439-RA 1..1563 80..1642 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:46:47 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
CG5439-RA 1..1807 1..1807 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:16:22 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
CG5439-RA 1..1807 1..1807 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:52 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
CG5439-RA 23..1829 1..1807 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:31 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
CG5439-RA 1..1807 1..1807 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:31 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
CG5439-RA 23..1829 1..1807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:04:56 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13177172..13178978 1..1807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:04:56 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13177172..13178978 1..1807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:04:56 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13177172..13178978 1..1807 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:52 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13177172..13178978 1..1807 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:30:03 Download gff for LD35592.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13177172..13178978 1..1807 100   Plus

LD35592.pep Sequence

Translation from 79 to 1641

> LD35592.pep
MPENASSSMPTEAGFRSMRSQLAGSTFGQRREDIFRRLQESAHKISQKFS
GKELATERDESVQELCESLEELMSYGLRQSAGTSSFSAASFIQNMQEMVS
GNAGGGSNNNDATFWEFCQTHLTPHERQRYMDLKQIWTNVGRGRAFIRAT
LNEKRLHSHVLTWLSDEEQLHRFYTPWSLLLNDEAAKKLPEIVDSLSDVL
FALNVDTTELNAPRRSTPSVAVKEEPIIFTTSPVPVVGRQKRPGIAVERP
IECVSSTEDLLGALKPIESVEVQQILSKESIEQELAQPQEEVNLGPFDPI
EPELEFLKTPLPDIGAHVGESELYEDRSDTSSQWSKSSSSANCLANSQQQ
AALEEHVNQLNERCALLETRVAELSLQNRLLIRRLTKQFEETGIDPSSSL
CSNFLITIPHVKLAKTQRSGSHYTYEVHITMRQRLEHWTFFRRYSEFYKL
HKSLLKTHPVVSAVEFPPKKHFGNMNLVFVEERRQQLQIYLLNLVETLPQ
VEACKSKAELQKVFPFFRDR*

LD35592.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14222-PA 523 GF14222-PA 3..523 1..520 1893 71 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23817-PA 520 GG23817-PA 1..520 1..520 2502 94.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11393-PA 520 GH11393-PA 1..520 9..520 1817 71.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5439-PA 520 CG5439-PA 1..520 1..520 2671 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18097-PA 525 GI18097-PA 1..525 9..520 1808 69.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24743-PA 526 GL24743-PA 1..526 1..520 2030 76.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18882-PA 526 GA18882-PA 1..526 1..520 2030 76.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10191-PA 312 GM10191-PA 1..312 209..520 1568 95.2 Plus
Dsec\GM10180-PA 197 GM10180-PA 1..194 1..194 880 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23868-PA 521 GD23868-PA 1..521 1..520 2698 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16875-PA 528 GJ16875-PA 1..528 9..520 1829 69.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15315-PA 505 GK15315-PA 1..504 9..519 1793 70.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18619-PA 520 GE18619-PA 1..520 1..520 2459 94.8 Plus

LD35592.hyp Sequence

Translation from 79 to 1641

> LD35592.hyp
MPENASSSMPTEAGFRSMRSQLAGSTFGQRREDIFRRLQESAHKISQKFS
GKELATERDESVQELCESLEELMSYGLRQSAGTSSFSAASFIQNMQEMVS
GNAGGGSNNNDATFWEFCQTHLTPHERQRYMDLKQIWTNVGRGRAFIRAT
LNEKRLHSHVLTWLSDEEQLHRFYTPWSLLLNDEAAKKLPEIVDSLSDVL
FALNVDTTELNAPRRSTPSVAVKEEPIIFTTSPVPVVGRQKRPGIAVERP
IECVSSTEDLLGALKPIESVEVQQILSKESIEQELAQPQEEVNLGPFDPI
EPELEFLKTPLPDIGAHVGESELYEDRSDTSSQWSKSSSSANCLANSQQQ
AALEEHVNQLNERCALLETRVAELSLQNRLLIRRLTKQFEETGIDPSSSL
CSNFLITIPHVKLAKTQRSGSHYTYEVHITMRQRLEHWTFFRRYSEFYKL
HKSLLKTHPVVSAVEFPPKKHFGNMNLVFVEERRQQLQIYLLNLVETLPQ
VEACKSKAELQKVFPFFRDR*

LD35592.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5439-PA 520 CG5439-PA 1..520 1..520 2671 100 Plus