Clone LD35624 Report

Search the DGRC for LD35624

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:356
Well:24
Vector:pOT2
Associated Gene/Transcriptfeo-RA
Protein status:LD35624.pep: gold
Sequenced Size:2449

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
feo 2008-04-29 Picked prior to 5.5
feo 2008-08-15 Release 5.9 accounting
feo 2008-12-18 5.12 accounting

Clone Sequence Records

LD35624.complete Sequence

2449 bp assembled on 2008-05-16

GenBank Submission: BT032843

> LD35624.complete
CATCGATTCATTCAGTTCGAAATTTCGTGCAGTGATGCACTCTAAATAAA
CCACTAAATAAATCCGCACATTCCCGAGCAATCCTGCCCAGCGTTGTGGG
TCTGCGACACAACTGTCAAGTTAACTCAGATATGCTGGTTAAATAGTCCC
CAAGTGAACACAACGAAAAAACAAAGCCAGTGAGCATTTACGCAAGAAAA
GAAATTTTGAACAAAAAAAAAAAAACACAAATTTCACAACGAAAACGGAG
AAAATGAACTCGCCGAGCGCCATTGCGGTGAAGGCCCAGATCCTGGAGAT
GACGGGCGAGCACGTGGATCAGTTGCACGCGATGTGGTCGCAGTTGTTCG
AGGTCAAGACCTGCGGTGAGTTCCTCCTCCGGTTGAAGGACCATGCGAAC
AGCTTCTTCACGGATTTGCTCAATGAGTCGCGCGAAAAGCAGCAGGCGAT
CCTCAACGATATAGCCGCCTTGCGGGCAGAGGCCACCGACTTGACGCGCC
TACTCCACGAGCCGCTGGACATTGGCGAGCGGCCGGAGTCCATGCCGCTG
GTCGTCTGGGAGCTGAAGCTGGACAAAAGCATCGAGCACTTACGCGATCA
GCTGGCCAGGCGGCGAGCGGAGATCTGTGAGCTTCTGCTGCAGCAGGAGC
AGCTGTGCGAGGAACTGGGAGAGCTGCCTCTGCCACTGTTGGCGGATCCA
CTGCCGCTGCCCGAGGAGATGGACGCCTTTCGGAATCGCCTGGGCCAGCT
ACGCGATCAGCGAGTGCTGCGCCTCAAAGAGATGGACCAGCTGCGCCAGG
CCATTAAGCACGACATGAAGCTGCTTGAGTGCCTGCCCCAGACGGACACC
GAGGAGCGTCTGCTCAACCAGGTGGATCACTGCCTAACGCCGGAGACCTT
CGAGCTCCTGCGCAACATGCAAAAGAACTTCGCCGACCAGGTGAAGGAGC
TGAGGGAGCGCATCGACGATATGCGCGAAAAGATCCATGTGCTGTGGGAC
AGACTCCAGGAGACAGACGAGTATGCCATGCGTCGCGTGCGCGAGGCTAC
GACCTACACTCAACGCACCTACGATGTCCTGCGGGAGGAACTGCAGCGCT
GCCAGGCCCTGCGACGCCAGAATCTGAAAACCTTCATCGAGCAGCTACGC
ATCGAGATCAAGGAGATGTGGGATCTCACACTTAAGAGCCAGCAGGAGCG
CAAGCGCTTCTCGAACTACTACAACGACTGGTACAACGAAGATCTGCTGG
AGCTCCACGAACTTGAGCTGGACGACCTCAAGACCTTCTACAACAAGAAC
AAGGAGATCTTCGATCTGTACGAAAGCCGTGCCGAACTCTGGTCGCGCAT
GGAGGCGCTGGAGGCCAAGGCGAGCGAGCCGAATCGCTTCAACAATCGTG
GCGGCCAGTTGCTCAAGGAGGAGAAGGAGCGCAAGGCCATCACCTCCAAG
CTGCCCAAGATTGAGCAGCAGATCACGGAACTGGTGCAGGCATACGAGGC
GCAGGAGAACACACCCTTTCTGGTGCACGGCGAGAACATCCTGGAGCGGA
TGGCCGCCGATTGGGAGCGTCATCGCCAGGCCAAACAGCAGAGCTCGGCG
CGCAAGAAGGCACCGCCATCGGCCAGCAAGATAATGCCACCGCCGGCAAC
GGGCTCGACAGCTCCACGCACGCCGCGCACGCTGCGCAACATGTCGACCC
TTTCCAGCTCCACCATGTCGCTGCGCAAGACGCCGTCGCAGCAGCACCTC
CGTCCACTAAACATCACCAAGAGTACGGGCAATCTGCACAAGCGCCTGAA
TCCGTCCGGCCTGCAGACGGGCCCCAAAACGCCCAACGCCAAGCGCAGCC
TTATGAACACACTCAACTCGATGAAGGCGTCGCCAGCCAAGCACCTGCTC
GCGCCCAGCCAGCAGCATAACCAGCTGAAGAGCACCAAGTCGCCGCTGAA
ACGTGTTCGCGTACTGGACAACACACTGCGACGCAGCGGCGGTATGGGCA
GGCGCAGCATTGGAACGCGTTCCAGCAAGAAGGCGCGCACCAAGTCCAAC
GATCAGAACGCCCCACCCGACAGCAGTGACTACACAACGGACGAGAATCC
CGAGCAGGGTGTCAGCTATGACGAATTTCAGCCGACCAGTCGCTCCTCGA
TGCTGCCGCGCCAGCGTCATCAATTGGCCGTGCCGCGAACTCGTCGTGCG
GAAATGAATGCCAATCTGCCGGTGCCGCGGGAAAGCCTGATGATCGTGCA
GCCGCGCAGACAGTTCTAGTTCCACTGGAGATTGACTAGCTTAACGCGTA
CCTACTACACTATTTCATAACAGTTGGAGTTTCTTGATGTATTTTAATTT
TTTATTTTCTGTTTTACGTTTTCAGAATAAAATTTATGTGAGTTTTTTCG
CTTGACCACAAGAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD35624.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
feo-RA 2430 feo-RA 18..2430 1..2413 12065 100 Plus
sofe-RA 2242 sofe-RA 253..648 404..799 570 76.2 Plus
sofe-RA 2242 sofe-RA 1114..1339 1265..1490 470 80.5 Plus
sofe-RA 2242 sofe-RA 861..1071 1012..1222 395 79.1 Plus
sofe-RA 2242 sofe-RA 1358..1459 1509..1610 180 78.4 Plus
sofe-RA 2242 sofe-RA 778..833 929..984 145 83.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10743747..10746159 2413..1 11960 99.7 Minus
chrX 22417052 chrX 10747225..10748535 1610..300 1260 73.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10852445..10854857 2413..1 12065 100 Minus
X 23542271 X 10855924..10857234 1610..300 1275 73.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10860543..10862955 2413..1 12065 100 Minus
X 23527363 X 10864142..10864367 1490..1265 470 80.5 Minus
X 23527363 X 10864833..10865066 799..566 435 79 Minus
X 23527363 X 10864410..10864620 1222..1012 395 79.1 Minus
X 23527363 X 10865095..10865228 537..404 190 76.1 Minus
X 23527363 X 10864022..10864123 1610..1509 180 78.4 Minus
X 23527363 X 10864648..10864703 984..929 145 83.9 Minus
Blast to na_te.dros performed on 2019-03-15 19:51:36 has no hits.

LD35624.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:52:39 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10743747..10746159 1..2413 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:47 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
feo-RA 1..2016 254..2269 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:00:01 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
feo-RA 1..2016 254..2269 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:02:52 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
feo-RA 1..2016 254..2269 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:59:32 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
feo-RA 1..2016 254..2269 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:09:19 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
feo-RA 1..2016 254..2269 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:25:11 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
feo-RA 18..2430 1..2413 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:00:01 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
feo-RA 18..2430 1..2413 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:52 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
feo-RA 13..2424 1..2412 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:59:32 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
feo-RA 18..2430 1..2413 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:09:19 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
feo-RA 13..2424 1..2412 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:39 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
X 10852445..10854857 1..2413 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:39 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
X 10852445..10854857 1..2413 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:39 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
X 10852445..10854857 1..2413 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:52 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10746478..10748890 1..2413 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:35:33 Download gff for LD35624.complete
Subject Subject Range Query Range Percent Splice Strand
X 10860543..10862955 1..2413 100   Minus

LD35624.pep Sequence

Translation from 253 to 2268

> LD35624.pep
MNSPSAIAVKAQILEMTGEHVDQLHAMWSQLFEVKTCGEFLLRLKDHANS
FFTDLLNESREKQQAILNDIAALRAEATDLTRLLHEPLDIGERPESMPLV
VWELKLDKSIEHLRDQLARRRAEICELLLQQEQLCEELGELPLPLLADPL
PLPEEMDAFRNRLGQLRDQRVLRLKEMDQLRQAIKHDMKLLECLPQTDTE
ERLLNQVDHCLTPETFELLRNMQKNFADQVKELRERIDDMREKIHVLWDR
LQETDEYAMRRVREATTYTQRTYDVLREELQRCQALRRQNLKTFIEQLRI
EIKEMWDLTLKSQQERKRFSNYYNDWYNEDLLELHELELDDLKTFYNKNK
EIFDLYESRAELWSRMEALEAKASEPNRFNNRGGQLLKEEKERKAITSKL
PKIEQQITELVQAYEAQENTPFLVHGENILERMAADWERHRQAKQQSSAR
KKAPPSASKIMPPPATGSTAPRTPRTLRNMSTLSSSTMSLRKTPSQQHLR
PLNITKSTGNLHKRLNPSGLQTGPKTPNAKRSLMNTLNSMKASPAKHLLA
PSQQHNQLKSTKSPLKRVRVLDNTLRRSGGMGRRSIGTRSSKKARTKSND
QNAPPDSSDYTTDENPEQGVSYDEFQPTSRSSMLPRQRHQLAVPRTRRAE
MNANLPVPRESLMIVQPRRQF*

LD35624.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20260-PA 681 GF20260-PA 4..681 1..671 2631 81.8 Plus
Dana\GF20258-PA 611 GF20258-PA 7..602 10..615 1706 59.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18896-PA 655 GG18896-PA 1..655 1..661 2972 91.4 Plus
Dere\GG18895-PA 610 GG18895-PA 7..579 10..595 1699 57.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24191-PA 638 GH24191-PA 5..635 9..638 1616 60.2 Plus
Dgri\GH24767-PA 633 GH24767-PA 1..605 31..637 1520 59.7 Plus
Dgri\GH23324-PA 346 GH23324-PA 68..331 215..476 401 36.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
feo-PA 671 CG11207-PA 1..671 1..671 3450 100 Plus
sofe-PB 607 CG1655-PB 7..601 10..618 1698 57 Plus
sofe-PA 607 CG1655-PA 7..601 10..618 1698 57 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15801-PA 703 GI15801-PA 7..696 9..663 1717 59.1 Plus
Dmoj\GI14829-PA 549 GI14829-PA 16..474 39..495 494 29.7 Plus
Dmoj\GI13637-PA 365 GI13637-PA 64..347 206..489 485 42 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14295-PA 681 GL14295-PA 6..681 8..668 2070 66.1 Plus
Dper\GL12872-PA 661 GL12872-PA 1..661 1..671 1924 61 Plus
Dper\GL21681-PA 629 GL21681-PA 1..517 1..511 1533 62.9 Plus
Dper\GL21682-PA 629 GL21682-PA 1..517 1..511 1533 62.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10841-PA 706 GA10841-PA 6..706 8..668 2215 68.8 Plus
Dpse\GA22612-PA 644 GA22612-PA 1..603 1..654 1818 62 Plus
Dpse\GA26369-PA 604 GA26369-PA 1..516 1..511 1514 59.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11282-PA 671 GM11282-PA 1..671 1..671 3487 97.8 Plus
Dsec\GM11280-PA 614 GM11280-PA 1..606 1..621 1596 53.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18655-PA 690 GJ18655-PA 6..638 8..636 1856 65.5 Plus
Dvir\GJ19495-PA 663 GJ19495-PA 7..649 10..637 1791 63.1 Plus
Dvir\GJ13975-PA 364 GJ13975-PA 64..345 206..489 546 44.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16121-PA 694 GK16121-PA 4..653 8..646 1637 56.1 Plus
Dwil\GK18211-PA 571 GK18211-PA 4..473 8..474 1172 50.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15366-PA 656 GE15366-PA 1..656 1..661 3017 92.6 Plus
Dyak\GE15365-PA 612 GE15365-PA 7..600 10..606 1697 58.9 Plus

LD35624.hyp Sequence

Translation from 253 to 2268

> LD35624.hyp
MNSPSAIAVKAQILEMTGEHVDQLHAMWSQLFEVKTCGEFLLRLKDHANS
FFTDLLNESREKQQAILNDIAALRAEATDLTRLLHEPLDIGERPESMPLV
VWELKLDKSIEHLRDQLARRRAEICELLLQQEQLCEELGELPLPLLADPL
PLPEEMDAFRNRLGQLRDQRVLRLKEMDQLRQAIKHDMKLLECLPQTDTE
ERLLNQVDHCLTPETFELLRNMQKNFADQVKELRERIDDMREKIHVLWDR
LQETDEYAMRRVREATTYTQRTYDVLREELQRCQALRRQNLKTFIEQLRI
EIKEMWDLTLKSQQERKRFSNYYNDWYNEDLLELHELELDDLKTFYNKNK
EIFDLYESRAELWSRMEALEAKASEPNRFNNRGGQLLKEEKERKAITSKL
PKIEQQITELVQAYEAQENTPFLVHGENILERMAADWERHRQAKQQSSAR
KKAPPSASKIMPPPATGSTAPRTPRTLRNMSTLSSSTMSLRKTPSQQHLR
PLNITKSTGNLHKRLNPSGLQTGPKTPNAKRSLMNTLNSMKASPAKHLLA
PSQQHNQLKSTKSPLKRVRVLDNTLRRSGGMGRRSIGTRSSKKARTKSND
QNAPPDSSDYTTDENPEQGVSYDEFQPTSRSSMLPRQRHQLAVPRTRRAE
MNANLPVPRESLMIVQPRRQF*

LD35624.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
feo-PA 671 CG11207-PA 1..671 1..671 3450 100 Plus
sofe-PB 607 CG1655-PB 7..601 10..618 1698 57 Plus
sofe-PA 607 CG1655-PA 7..601 10..618 1698 57 Plus