LD35644.complete Sequence
1115 bp (1115 high quality bases) assembled on 2003-01-14
GenBank Submission: AY061423
> LD35644.complete
CAACAATCCAAATGAACTCCTACGGTTTGTAGACAATATTAAAAACTGAA
TTTAACTGCCTTCCCACAAGAAATCACCAACACAAAGGGAGCGACAACCC
ACCGCCTGCGCCCAGAAACCTGGTCGACTGTTTTCCCGAGTTTTCTTTTG
GCCCACAACCTGCGTTTGCTCTGTGCAGTCACTGCCGCGCCATACATTTT
ATTTCATTAGCGAAGCCCATATATATTTATAATTTTACTTGTGTGTTTTG
TTTGCCGCGACGTTTCGTTTTCAATTCGATGGTGCACCAAAACACACAGC
TCAGAACATCCACATAGCACACTGAAAGAAACCAAGAACCCAACCCGACA
CCGAAACTGAATAGACGCAAGTACCGACCCAACGAGACCCTTTCCAAAGC
CAAAGACCAGTCCAAAATGGCCAAAATGTACGGAAAGGGTAAGACTGCTA
TCGAGTCGGAGGAGCTGCAGAAGCGACGCTGGCAGATCGAGCTGGAGTTC
GTGCAGTGCCTGTCGAACCCCAACTATCTAAACTTCCTTGCACAGCGTGG
ATTTTTCAAGGACCAGTCGTTCATCAACTACCTGAAGTATCTGCAGTACT
GGAAGGAGCCGGACTATGCGAAATACCTCATGTACCCAATGTGCCTCTAC
TTCCTCGATCTGCTGCAGTACGAACACTTCCGCCGGGAGATCGTCAACTC
GCAGTGCTGCAAGTTCATAGACGACCAGGCCATTCTGCAGTGGCAGCACT
ACACTCGCAAGCGCATCAAACTGATCGAAAACGTTACGGCCGCCCAGCAG
CAACAACAGCAGCTTCAGCAGCAACAACAGCAGGCGAACGGCATGGAGGC
AGCAACGGGAGGCGAATCAGCAGCACCTACCCCCAACGTGAACGGGTCAG
CTTCCACGGCGGATAGTCAACAGACGTCTTCTGCCCTACAGCCTGTCCAA
GCACAGCCTGGAAATCCCCAGCAGCAGCAGCAAATCAATGGCGTGGCATC
GGGGGCCAACATAAAACTAGAGTTAAACTAGCGCTGGCAACTAAAAGTTT
ACCAATAAAATAGTATAAGAACCTGGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
LD35644.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-RA | 1182 | MED31-RA | 45..1122 | 1..1078 | 5390 | 100 | Plus |
MED31-RB | 812 | MED31-RB | 35..812 | 299..1076 | 3890 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 468461..469002 | 535..1076 | 2710 | 100 | Plus |
chr3R | 27901430 | chr3R | 467695..468138 | 1..444 | 2220 | 100 | Plus |
chr3R | 27901430 | chr3R | 468279..468368 | 445..534 | 450 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4642751..4643294 | 535..1078 | 2720 | 100 | Plus |
3R | 32079331 | 3R | 4641985..4642428 | 1..444 | 2220 | 100 | Plus |
3R | 32079331 | 3R | 4642569..4642658 | 445..534 | 450 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 4383582..4384125 | 535..1078 | 2720 | 100 | Plus |
3R | 31820162 | 3R | 4382816..4383259 | 1..444 | 2220 | 100 | Plus |
3R | 31820162 | 3R | 4383400..4383489 | 445..534 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-15 22:28:15 has no hits.
LD35644.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:28:54 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 467695..468138 | 1..444 | 100 | -> | Plus |
chr3R | 468279..468368 | 445..534 | 100 | -> | Plus |
chr3R | 468461..469002 | 535..1076 | 92 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:50 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RB | 1..615 | 417..1031 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:58:01 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RB | 1..615 | 417..1031 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:21:13 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 1..615 | 417..1031 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 17:48:50 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:01 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 1..615 | 417..1031 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:14:27 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 12..1087 | 1..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:58:01 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 12..1087 | 1..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:21:13 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 23..1098 | 1..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:48:50 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 12..1087 | 1..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:01 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 23..1098 | 1..1076 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:54 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4641985..4642428 | 1..444 | 100 | -> | Plus |
3R | 4642569..4642658 | 445..534 | 100 | -> | Plus |
3R | 4642751..4643292 | 535..1076 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:54 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4641985..4642428 | 1..444 | 100 | -> | Plus |
3R | 4642569..4642658 | 445..534 | 100 | -> | Plus |
3R | 4642751..4643292 | 535..1076 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:54 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4641985..4642428 | 1..444 | 100 | -> | Plus |
3R | 4642569..4642658 | 445..534 | 100 | -> | Plus |
3R | 4642751..4643292 | 535..1076 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:21:13 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 467707..468150 | 1..444 | 100 | -> | Plus |
arm_3R | 468291..468380 | 445..534 | 100 | -> | Plus |
arm_3R | 468473..469014 | 535..1076 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:20:15 Download gff for
LD35644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4382816..4383259 | 1..444 | 100 | -> | Plus |
3R | 4383400..4383489 | 445..534 | 100 | -> | Plus |
3R | 4383582..4384123 | 535..1076 | 100 | | Plus |
LD35644.hyp Sequence
Translation from 416 to 1030
> LD35644.hyp
MAKMYGKGKTAIESEELQKRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQ
SFINYLKYLQYWKEPDYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKF
IDDQAILQWQHYTRKRIKLIENVTAAQQQQQQLQQQQQQANGMEAATGGE
SAAPTPNVNGSASTADSQQTSSALQPVQAQPGNPQQQQQINGVASGANIK
LELN*
LD35644.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-PC | 204 | CG1057-PC | 1..204 | 1..204 | 1072 | 100 | Plus |
MED31-PB | 204 | CG1057-PB | 1..204 | 1..204 | 1072 | 100 | Plus |
MED31-PA | 204 | CG1057-PA | 1..204 | 1..204 | 1072 | 100 | Plus |
MED31-PD | 202 | CG1057-PD | 1..202 | 1..204 | 1043 | 98.5 | Plus |
MED31-PE | 199 | CG1057-PE | 6..199 | 11..204 | 1019 | 100 | Plus |
LD35644.pep Sequence
Translation from 416 to 1030
> LD35644.pep
MAKMYGKGKTAIESEELQKRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQ
SFINYLKYLQYWKEPDYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKF
IDDQAILQWQHYTRKRIKLIENVTAAQQQQQQLQQQQQQANGMEAATGGE
SAAPTPNVNGSASTADSQQTSSALQPVQAQPGNPQQQQQINGVASGANIK
LELN*
LD35644.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF16664-PA | 205 | GF16664-PA | 1..205 | 1..204 | 789 | 83.9 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG12516-PA | 203 | GG12516-PA | 1..203 | 1..204 | 961 | 94.1 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH19496-PA | 261 | GH19496-PA | 1..170 | 1..175 | 668 | 78.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-PC | 204 | CG1057-PC | 1..204 | 1..204 | 1072 | 100 | Plus |
MED31-PB | 204 | CG1057-PB | 1..204 | 1..204 | 1072 | 100 | Plus |
MED31-PA | 204 | CG1057-PA | 1..204 | 1..204 | 1072 | 100 | Plus |
MED31-PD | 202 | CG1057-PD | 1..202 | 1..204 | 1043 | 98.5 | Plus |
MED31-PE | 199 | CG1057-PE | 6..199 | 11..204 | 1019 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI23767-PA | 251 | GI23767-PA | 1..123 | 1..123 | 636 | 92.7 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL22071-PA | 214 | GL22071-PA | 1..214 | 1..204 | 712 | 75.7 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA27367-PA | 214 | GA27367-PA | 1..214 | 1..204 | 701 | 74.1 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM10767-PA | 205 | GM10767-PA | 1..205 | 1..204 | 1049 | 97.6 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD19742-PA | 206 | GD19742-PA | 1..206 | 1..204 | 1055 | 97.6 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ23949-PA | 248 | GJ23949-PA | 1..248 | 1..204 | 664 | 66.1 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:54:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK11506-PA | 218 | GK11506-PA | 1..218 | 1..204 | 711 | 74.4 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE25426-PA | 199 | GE25426-PA | 1..199 | 1..204 | 883 | 91.7 | Plus |
Dyak\GE14983-PA | 79 | GE14983-PA | 1..39 | 1..39 | 209 | 100 | Plus |