Clone LD35753 Report

Search the DGRC for LD35753

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:357
Well:53
Vector:pOT2
Associated Gene/TranscriptCDC45L-RA
Protein status:LD35753.pep: gold
Preliminary Size:2246
Sequenced Size:2203

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3658 2001-01-01 Release 2 assignment
CG3658 2001-07-04 Blastp of sequenced clone
CG3658 2003-01-01 Sim4 clustering to Release 3
CDC45L 2008-04-29 Release 5.5 accounting
CDC45L 2008-08-15 Release 5.9 accounting
CDC45L 2008-12-18 5.12 accounting

Clone Sequence Records

LD35753.complete Sequence

2203 bp (2203 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051861

> LD35753.complete
AAAAGCAAAAGTGGAGCGGCAGTGGGAAGCTGGAAAATAGCGCAAGCCGC
AGGGAAACCCTCAAAATGCAACGCACTGCACTCATGTAGAATTCTACTTT
GCATCGTAAGCGATTGGAAAGAGACCGTTGTGTCTAGACGTAGACAGATT
AGGCAGACGATTGGGATTCCCGCCAGAAGTGTTCACCATGTTTGTCCAGG
ATCTGCGCAACGACTTTTACCGCCAGCTGGTTGGCAAGCGCATCTTGATC
GTGGTCAACTACGACATCGATGCCATCTGCGCCAGTCGCATCCTGCAGGC
CTTGTTCAAGTACGATCACATGCTGTACACCGTGGTGCCCATAATGGGCG
TTACGGGTCTGAAGCGGGCCTATGGAGAGCACCAGGGCGACGTTAAGTAC
GTGGTGTTGGTGAACTGCGGCGGCTGTGTAGATATTGTGGAGCTCCTGCA
GCCGTCGGACGACGTGACCTTCTTCATATGCGATTCACATCGCCCGTTGG
ATGTGTGTAACATCTACAGCGATCGGCAGGTGTGCATCTTGGGGGATGCC
TCCTTGGAGGAGAATATTCCAGCGTTCGAGACAATTTTCTATGACTCTGA
AGGTGAAGACGAGGATGAGGACGAGTCCTCTGACACGGAACAGCAGCACG
ACGACAGTGGTGCCGGGGAATCGGACCAGGAGGATCAGGCGCCAAGGAGC
CGTAAGCTCAGTCGCCTGGAGCGGCACGAGCAACGCATCCTGAAGCAGCG
AGCCCGCCGACAGTGGGAGTCTGAGCGCGACAGGATTATGTTCGAGTACA
CGCAGTTCAGCTACTACGGCAGGTCCGCCGCTTTGATGGTTTTTGAGTTG
GCCTGGAAGCTCTCAAAAGACAACATGGACCTGCTCTGGTGGGCCATTGT
GGGCATCACGGAGCAGCTGCTGCTGGGCAAGATCGAGAGTGGAGCGTATA
CTTTGGAGCTGGAGCAAATCCAGTCGCATGTGTCCCGACTGACGAACAAA
ACGAATGATCAGAACACGATGAGTGCCTCCAAGATAACCTTCGAGAATGA
TTTGCATCTGGTCTTGTACCGCCACTGGCCCGTCACGGAATCCATGAGGT
ATTCCCGCTACTCCTCATGCCAGCTGAAGCTGTGGACACTGCGCGGAGAG
AAGAGATTACACGAGCTGCTGCTCGAGATGGGACTTCCCTTGGTGCACGC
CCGCCAAACGTACGGAGCCATGGATTTGGTGTTGCGCAAGGAGTTCTTCT
CGATGGTGGAGCGCCTGGCGGAGAAGTACGACATAGCGGACATAGTTTAC
GGCACCTTTACGCTGAGCTACGGCTACCGCAGCAGATATGCTGCGGCGGA
CTACGTTTATGCCCTGCTCGCCATCATGGAGTCCGTGAAGAAGCACAAGA
CTCCGGAGGATTGCTTTCTGGAGGCCTCGGATGCTTTGAGTCGTCAGCAC
AAGCAGCTGCTGTCTGCAGGCATCGACCAGGCGAAGCTTTTGCATGCTGC
TGTCTTTCGGCAGGTGCAGAGCAGCTTGGAGGCACGCCAAGTTCATTCAG
CGGGCTCCTTTTTCTACTACGTTCTGCAGGAGGAACACGCGTTCTTCTCA
TACCCCTATGCCCTTGGACTGTTGGCTCGCTTTCTTTTGCGCGGACATGT
GGCCACGAGTAGAGCCAGGCAGGCTTCGGACTTGCCGTTGATCGCAAGTT
GTCCCCTGAACGCTTCGGAGGGCATGTGCTTGCTGGTAGGCATTGTCCCG
GTAAGGGAAGACTCTCCGCGAAACTTCTTTGGCAAGGCCTTCGAGCAGGC
GGCGCAAAAGAGTGGAGTCGCTCTATTGCAGGACTTTTTCGAGCCAGCGG
TGGTGCAGCTGCGGCAGAGCGACCTCACACGCTTTCTGGACTCCCTCACG
GTGCTGTTAGCCTAATCCACGCCGCTTTCTATTCTACCTGCTACCGACAC
ATCCCTGCTCAATCATATTATGTGCTAAGCTAGTTTTATATCGCGAGACC
TCACGTGTACACTTAGTTTAAGATTTTACCAAACCCTATTTATGTACGAT
TGTGTGTTAATAACTTTATCATTGCTCCCAGGACCACAAAATGCAAAATG
TCCTTTTTCAAAAACTAATTGTAAATTTGACCTAGAATAATAAATTTAAA
TTAAAGTGTTTACCATGGAATTAAAAAAAAAAAACAAAAAAAAAAAAAAA
AAA

LD35753.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
CDC45L-RA 2357 CDC45L-RA 182..2357 1..2176 10880 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 923399..924498 1100..1 5485 99.9 Minus
chrX 22417052 chrX 922271..923350 2176..1097 5400 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1029415..1030514 1100..1 5500 100 Minus
X 23542271 X 1028287..1029366 2176..1097 5400 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1037513..1038612 1100..1 5500 100 Minus
X 23527363 X 1036385..1037464 2176..1097 5400 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:37:16 has no hits.

LD35753.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:38:26 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 922275..923348 1099..2172 100 <- Minus
chrX 923401..924498 1..1098 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:58 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
CDC45L-RA 1..1728 188..1915 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:41:10 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
CDC45L-RA 1..1728 188..1915 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:51 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
CDC45L-RA 1..1728 188..1915 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:19:28 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
CDC45L-RA 1..1728 188..1915 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:00 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
CDC45L-RA 1..1728 188..1915 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:47:02 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
CDC45L-RA 60..2231 1..2172 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:41:10 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
CDC45L-RA 60..2231 1..2172 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:51 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
CDC45L-RA 68..2239 1..2172 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:19:28 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
CDC45L-RA 60..2231 1..2172 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:00 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
CDC45L-RA 43..2214 1..2172 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:26 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
X 1028291..1029364 1099..2172 100 <- Minus
X 1029417..1030514 1..1098 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:26 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
X 1028291..1029364 1099..2172 100 <- Minus
X 1029417..1030514 1..1098 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:26 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
X 1028291..1029364 1099..2172 100 <- Minus
X 1029417..1030514 1..1098 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:51 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 922324..923397 1099..2172 100 <- Minus
arm_X 923450..924547 1..1098 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:54:22 Download gff for LD35753.complete
Subject Subject Range Query Range Percent Splice Strand
X 1036389..1037462 1099..2172 100 <- Minus
X 1037515..1038612 1..1098 100   Minus

LD35753.pep Sequence

Translation from 187 to 1914

> LD35753.pep
MFVQDLRNDFYRQLVGKRILIVVNYDIDAICASRILQALFKYDHMLYTVV
PIMGVTGLKRAYGEHQGDVKYVVLVNCGGCVDIVELLQPSDDVTFFICDS
HRPLDVCNIYSDRQVCILGDASLEENIPAFETIFYDSEGEDEDEDESSDT
EQQHDDSGAGESDQEDQAPRSRKLSRLERHEQRILKQRARRQWESERDRI
MFEYTQFSYYGRSAALMVFELAWKLSKDNMDLLWWAIVGITEQLLLGKIE
SGAYTLELEQIQSHVSRLTNKTNDQNTMSASKITFENDLHLVLYRHWPVT
ESMRYSRYSSCQLKLWTLRGEKRLHELLLEMGLPLVHARQTYGAMDLVLR
KEFFSMVERLAEKYDIADIVYGTFTLSYGYRSRYAAADYVYALLAIMESV
KKHKTPEDCFLEASDALSRQHKQLLSAGIDQAKLLHAAVFRQVQSSLEAR
QVHSAGSFFYYVLQEEHAFFSYPYALGLLARFLLRGHVATSRARQASDLP
LIASCPLNASEGMCLLVGIVPVREDSPRNFFGKAFEQAAQKSGVALLQDF
FEPAVVQLRQSDLTRFLDSLTVLLA*

LD35753.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22037-PA 585 GF22037-PA 1..585 1..575 2809 91.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12721-PA 577 GG12721-PA 1..577 1..575 3008 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12736-PA 580 GH12736-PA 1..580 1..575 2559 81 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
CDC45L-PA 575 CG3658-PA 1..575 1..575 2961 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14991-PA 582 GI14991-PA 1..582 1..575 2596 83.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14405-PA 569 GL14405-PA 1..569 1..575 2529 82.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17594-PA 581 GA17594-PA 1..581 1..575 2710 87.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19000-PA 575 GM19000-PA 1..575 1..575 3044 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16439-PA 575 GD16439-PA 1..575 1..575 3044 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15347-PA 577 GJ15347-PA 1..577 1..575 2590 82.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16247-PA 571 GK16247-PA 1..571 1..575 2402 77 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16547-PA 575 GE16547-PA 1..575 1..575 3014 97.2 Plus

LD35753.hyp Sequence

Translation from 187 to 1914

> LD35753.hyp
MFVQDLRNDFYRQLVGKRILIVVNYDIDAICASRILQALFKYDHMLYTVV
PIMGVTGLKRAYGEHQGDVKYVVLVNCGGCVDIVELLQPSDDVTFFICDS
HRPLDVCNIYSDRQVCILGDASLEENIPAFETIFYDSEGEDEDEDESSDT
EQQHDDSGAGESDQEDQAPRSRKLSRLERHEQRILKQRARRQWESERDRI
MFEYTQFSYYGRSAALMVFELAWKLSKDNMDLLWWAIVGITEQLLLGKIE
SGAYTLELEQIQSHVSRLTNKTNDQNTMSASKITFENDLHLVLYRHWPVT
ESMRYSRYSSCQLKLWTLRGEKRLHELLLEMGLPLVHARQTYGAMDLVLR
KEFFSMVERLAEKYDIADIVYGTFTLSYGYRSRYAAADYVYALLAIMESV
KKHKTPEDCFLEASDALSRQHKQLLSAGIDQAKLLHAAVFRQVQSSLEAR
QVHSAGSFFYYVLQEEHAFFSYPYALGLLARFLLRGHVATSRARQASDLP
LIASCPLNASEGMCLLVGIVPVREDSPRNFFGKAFEQAAQKSGVALLQDF
FEPAVVQLRQSDLTRFLDSLTVLLA*

LD35753.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
CDC45L-PA 575 CG3658-PA 1..575 1..575 2961 100 Plus