Clone LD35784 Report

Search the DGRC for LD35784

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:357
Well:84
Vector:pOT2
Associated Gene/Transcriptdup-RA
Protein status:LD35784.pep: gold
Preliminary Size:2699
Sequenced Size:3119

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8171 2002-01-01 Sim4 clustering to Release 2
CG8171 2002-06-04 Blastp of sequenced clone
CG8171 2003-01-01 Sim4 clustering to Release 3
dup 2008-04-29 Release 5.5 accounting
dup 2008-08-15 Release 5.9 accounting
dup 2008-12-18 5.12 accounting

Clone Sequence Records

LD35784.complete Sequence

3119 bp (3119 high quality bases) assembled on 2002-06-04

GenBank Submission: AY118555

> LD35784.complete
CCGCTTGGAAATTTTGCTCGCCGTTTGCTTTCTCAAAGGCTCAAAAAAAT
GCAGCTACCACCGACTTACCTGGCTTCGCAAGTGAACGCGAACTAAGCCA
ATAGCATCTCGATTCGCCGGCGTTGCGCAGCGTTCGCAAATGCAGCTGAA
ACGAGCAAAAAACACGCGCACAACGAAAAATCCGCAAGTGGAAAAAACTG
CTACGGAAAAATCAACTCTGCCAGCAAACAGTGTTGCAAATCGATGGAGT
TAAACAGCTGAGTGGTTAGTGTTGACTGACAGCCGAGTACGGCAACTTAC
AACACTGTAGGCGTTTTGGCGCGATTTTAGGTTTTGGAGGGAAACTGCAT
CTAGTGAAAAATCGTGGCCAGTTGTAATTCGAGCAGTGCGCTGGCACGAC
GTGGTGATAAAAAAGGAAAACTAATAGAATTATACTGACTAGTGATAATT
AACCGGACGTGCCCATCTGTTAATTCAGCCAAGTGGTATCTTTACAACCG
TTTAGCCAACAACCAAATTGCTATCAGAAATATATATTATACACACTTAC
TATGGCCCAGCCATCGGTAGCTGCATTTTTCACAAACCGCAAACGCGCCG
CCTTGGATGATGCTATCAGTATCAAGAACAGGCGTTTGGTGGAACCCGCT
GAAACCGTCTCTCCTGCCTCCGCCCCTTCCCAGTTGCCAGCCGGCGACCA
GGATGCGGATCTAGACACCCTGAAGGCGGCGGCCACGGGCATGCGTACCC
GATCCGGACGCACTGCCCGACTAATTGTCACCGCCGCTCAAGAGAGCAAA
AAGAAGACACCGGCTGCCGCCAAGATGGAGCCACACATCAAGCAGCCCAA
GCTGGTGCAATTCATTAAAAAGGGCACTCTGTCGCCCAGGAAACAGGCTC
AGTCCAGTAAGCTGGACGAGGAGGAGCTGCAGCAGTCGTCGGCCATAAGC
GAGCACACGCCCAAGGTTAACTTCACCATCACAAGCCAGCAGAATGCGGA
CAATGTGCAGCGTGGCCTGCGCACACCCACCAAGCAGATCCTCAAGGATG
CCTCGCCGATCAAGGCGGATCTCCGCCGTCAGCTCACTTTCGACGAGGTA
AAAACGAAGGTATCGCGGAGTGCCAAGCTGCAGGAACTCAAGGCAGTGCT
GGCCCTTAAGGCGGCGCTCGAGCAGAAGCGCAAGGAGCAGGAGGAGCGCA
ACAGGAAACTCCGCGACGCTGGCCCCTCCCCATCGAAGTCCAAGATGAGC
GTGCAGCTCAAGGAATTCGACACAATCGAACTGGAGGTGCTTATAAGCCC
TTTGAAGACCTTCAAGACTCCCACAAAAATACCGCCACCCACCCCGGACA
AACATGAGCTTATGTCGCCGCGTCACACTGACGTCTCCAAGCGCCTTCTC
TTCAGTCCGGCCAAAAATGGATCTCCTGTCAAATTGGTGGAGGTGCCGGC
TTATAAGCGCTACGCCAGTCTGGTGGAAAGCAGCCGCGCCGGCCAACTTC
CATTGCCTTATAAGTACCGACACCTGTTGGACGTGTTCAAGGGTCTCGAT
TCCGTGGTGGCCATGTTTCACAACCGCAAGGAGACCATCACATTCAAGAA
GCTTAAGCCGGCAGTGCAGCGCATGCTCCGGAAGAACTTCACTGAGACCC
ATTTGGCCCAGATCAAGCACATCTATCCAGACGCATTTATCTTCAGTCAG
GTGAAGACGCGCAATTTCGGTTCTGTCTCCAAAGCGGACTATTTCCAGCT
GATCATCGCTCCCAATGTGGAGCCACTGCCCGAGCAACAGCAATCGGAGA
AGCCACAACATTTCACCAAGATCAACGAAGACGATGTGCTCGCGTCGGCC
CAGTCGACGTCCATGAATCCACACGTTATGACGGCGCGCATGCAGCGCTT
TCAGAGCCTTCTGCTCGATCGGGCAATGCGGGCGCACGACCAGTTCCTTC
GCTCCCAGGATCCGCCGATCATCATCGAAAAGGCGCTGACTCGCTGGCAT
CCGCAGTTTGATTTGGAGAGTTGTCCGGAAGTGGAGCTGTCCCCTTTGCC
GCAGCCGCCCAATGTCGAGAAATACTCGTCAGCTAAGGATATTCTGTCTA
CCGCTCGAAATCTCTTCAATTGCGCCACGCCCATGGAGAGAGCAATGGAT
CGCTATGAGGCCAAGTTGGAGTCGGAAAAACAGCAAGCAGCTGAAAGCAA
TAAAAAGACGGAGGAACAGCAGGCAGGAGAAGTTACCAGGACAAGTACAG
CGATTCAAACCAGTCAGGAGGTGCCTGGAATATCTGGATCATCGAAAAAC
CCAACTGTCCCTGAAACAACAAACCAAACAGAAACTGCCAAGCCCACCGT
GAAGGATTGCACAGTGCCAGATGCCAGCTCCAATCTACTGAAGGGACTGC
CAAAATCACTGATCGAGAAAATTCGAGCCAAACAGGCAGCAAAGGCTTTG
GAGGCGATGACTCGACGTCCTTCGCAGGACCAGGAGGCCACGAAGTACTC
ACGTTTGCCCGAATTGGCCAGACACCTGCGCAATGTCTTCGTTACCGAGC
GTAAAGGAGTGCTCACCCTGGAAGTAATCATCAAGAAGATCCAGAACAGC
TTCCGGGCGAACCTCACACCGCAGGAAATTGAGGCGCATCTGAAACTACT
TGCCAAGGAGCTACCCAGCTGGGCTTCCTTTCATGAAGTGCGCAAGACCA
TGTACCTCAAGGTTGCCAAGGACATGGACATGAACAAGATCATCGAGAAG
CTGGAGAGCGTGGCTAACGCCAAGAGCAATTAGACCGGAAACACGGAAAC
GCAACCAGGACGCGGGACTCCGTCGAGCAATGACCCTGTGGCTATATCCA
GATATATGTTTAAGTACTTGTCAAACTCGCTGGCCATTACTTGATTAAAC
AACCGGATTAGGCTAACCATCTTGACATTTCCACATTCAACAAGCACCTT
GACAACCAGGATTGGATTCATCACATTTACCCAAGCAATCATTATCATTA
TATGTGTAATTTTTGGACCAAACGTTTATACATTCATATTTATTAGTTTT
AAGACCATTTTCATGTTGTACCACGTTGAATAAATAAATATTTTTCCTGG
AAAAAAAAAAAAAAAAAAA

LD35784.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
dup-RA 3195 dup-RA 21..3130 1..3110 15520 99.9 Plus
SRPK.a 5190 SRPK.a 1..181 250..70 905 100 Minus
SRPK-RA 5137 SRPK-RA 1..164 233..70 820 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11263777..11265575 3100..1296 8750 99.1 Minus
chr2R 21145070 chr2R 11266709..11267374 1297..632 3315 99.8 Minus
chr2R 21145070 chr2R 11267471..11268102 632..1 3160 100 Minus
chr2R 21145070 chr2R 11261086..11261190 3100..2994 285 88.8 Minus
chr2R 21145070 chr2R 11261254..11261325 2105..2034 240 88.9 Minus
chr2R 21145070 chr2R 11262212..11262283 2105..2034 210 86.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15376609..15378423 3110..1296 9045 99.9 Minus
2R 25286936 2R 15379557..15380222 1297..632 3330 100 Minus
2R 25286936 2R 15380319..15380950 632..1 3160 100 Minus
2R 25286936 2R 15373894..15374001 3103..2994 300 89.1 Minus
2R 25286936 2R 15375035..15375106 2105..2034 225 87.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15377808..15379622 3110..1296 9045 99.8 Minus
2R 25260384 2R 15380756..15381421 1297..632 3330 100 Minus
2R 25260384 2R 15381518..15382149 632..1 3160 100 Minus
2R 25260384 2R 15375093..15375200 3103..2994 320 89 Minus
2R 25260384 2R 15376234..15376305 2105..2034 225 87.5 Minus
2R 25260384 2R 15375266..15375339 2105..2034 195 86.4 Minus
2R 25260384 2R 15376297..15376337 2026..1986 175 95.1 Minus
2R 25260384 2R 15375331..15375371 2026..1986 160 92.6 Minus
2R 25260384 2R 15376118..15376197 2992..2913 160 80 Minus
2R 25260384 2R 15376049..15376089 3103..3063 145 90.2 Minus
Blast to na_te.dros performed 2019-03-16 01:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 478..595 2944..3060 144 63.3 Plus
412 7567 412 412 7567bp 5094..5170 2189..2266 117 62.8 Plus

LD35784.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:22:09 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11263777..11265573 1298..3100 99 <- Minus
chr2R 11266709..11267373 633..1297 99 <- Minus
chr2R 11267471..11268102 1..632 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:17:59 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
dup-RA 1..2232 552..2783 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:32:46 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
dup-RA 1..2232 552..2783 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:05:26 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
dup-RA 1..2232 552..2783 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:23:32 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
dup-RA 1..2232 552..2783 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:31:50 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
dup-RA 1..2232 552..2783 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:03:20 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
dup-RA 11..3110 1..3100 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:32:45 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
dup-RA 11..3110 1..3100 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:05:26 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
dup-RA 39..3138 1..3100 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:23:32 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
dup-RA 11..3110 1..3100 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:31:50 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
dup-RA 39..3138 1..3100 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:09 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15376619..15378421 1298..3100 100 <- Minus
2R 15379557..15380221 633..1297 100 <- Minus
2R 15380319..15380950 1..632 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:09 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15376619..15378421 1298..3100 100 <- Minus
2R 15379557..15380221 633..1297 100 <- Minus
2R 15380319..15380950 1..632 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:09 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15376619..15378421 1298..3100 100 <- Minus
2R 15379557..15380221 633..1297 100 <- Minus
2R 15380319..15380950 1..632 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:26 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11264124..11265926 1298..3100 100 <- Minus
arm_2R 11267062..11267726 633..1297 100 <- Minus
arm_2R 11267824..11268455 1..632 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:56:46 Download gff for LD35784.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15377818..15379620 1298..3100 100 <- Minus
2R 15380756..15381420 633..1297 100 <- Minus
2R 15381518..15382149 1..632 100   Minus

LD35784.hyp Sequence

Translation from 551 to 2782

> LD35784.hyp
MAQPSVAAFFTNRKRAALDDAISIKNRRLVEPAETVSPASAPSQLPAGDQ
DADLDTLKAAATGMRTRSGRTARLIVTAAQESKKKTPAAAKMEPHIKQPK
LVQFIKKGTLSPRKQAQSSKLDEEELQQSSAISEHTPKVNFTITSQQNAD
NVQRGLRTPTKQILKDASPIKADLRRQLTFDEVKTKVSRSAKLQELKAVL
ALKAALEQKRKEQEERNRKLRDAGPSPSKSKMSVQLKEFDTIELEVLISP
LKTFKTPTKIPPPTPDKHELMSPRHTDVSKRLLFSPAKNGSPVKLVEVPA
YKRYASLVESSRAGQLPLPYKYRHLLDVFKGLDSVVAMFHNRKETITFKK
LKPAVQRMLRKNFTETHLAQIKHIYPDAFIFSQVKTRNFGSVSKADYFQL
IIAPNVEPLPEQQQSEKPQHFTKINEDDVLASAQSTSMNPHVMTARMQRF
QSLLLDRAMRAHDQFLRSQDPPIIIEKALTRWHPQFDLESCPEVELSPLP
QPPNVEKYSSAKDILSTARNLFNCATPMERAMDRYEAKLESEKQQAAESN
KKTEEQQAGEVTRTSTAIQTSQEVPGISGSSKNPTVPETTNQTETAKPTV
KDCTVPDASSNLLKGLPKSLIEKIRAKQAAKALEAMTRRPSQDQEATKYS
RLPELARHLRNVFVTERKGVLTLEVIIKKIQNSFRANLTPQEIEAHLKLL
AKELPSWASFHEVRKTMYLKVAKDMDMNKIIEKLESVANAKSN*

LD35784.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
dup-PB 743 CG8171-PB 1..743 1..743 3731 100 Plus
dup-PA 743 CG8171-PA 1..743 1..743 3731 100 Plus

LD35784.pep Sequence

Translation from 551 to 2782

> LD35784.pep
MAQPSVAAFFTNRKRAALDDAISIKNRRLVEPAETVSPASAPSQLPAGDQ
DADLDTLKAAATGMRTRSGRTARLIVTAAQESKKKTPAAAKMEPHIKQPK
LVQFIKKGTLSPRKQAQSSKLDEEELQQSSAISEHTPKVNFTITSQQNAD
NVQRGLRTPTKQILKDASPIKADLRRQLTFDEVKTKVSRSAKLQELKAVL
ALKAALEQKRKEQEERNRKLRDAGPSPSKSKMSVQLKEFDTIELEVLISP
LKTFKTPTKIPPPTPDKHELMSPRHTDVSKRLLFSPAKNGSPVKLVEVPA
YKRYASLVESSRAGQLPLPYKYRHLLDVFKGLDSVVAMFHNRKETITFKK
LKPAVQRMLRKNFTETHLAQIKHIYPDAFIFSQVKTRNFGSVSKADYFQL
IIAPNVEPLPEQQQSEKPQHFTKINEDDVLASAQSTSMNPHVMTARMQRF
QSLLLDRAMRAHDQFLRSQDPPIIIEKALTRWHPQFDLESCPEVELSPLP
QPPNVEKYSSAKDILSTARNLFNCATPMERAMDRYEAKLESEKQQAAESN
KKTEEQQAGEVTRTSTAIQTSQEVPGISGSSKNPTVPETTNQTETAKPTV
KDCTVPDASSNLLKGLPKSLIEKIRAKQAAKALEAMTRRPSQDQEATKYS
RLPELARHLRNVFVTERKGVLTLEVIIKKIQNSFRANLTPQEIEAHLKLL
AKELPSWASFHEVRKTMYLKVAKDMDMNKIIEKLESVANAKSN*

LD35784.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11870-PA 735 GF11870-PA 1..735 1..743 3066 81.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22355-PA 742 GG22355-PA 1..742 1..743 3532 93.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21650-PA 718 GH21650-PA 1..717 1..742 2644 70.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
dup-PB 743 CG8171-PB 1..743 1..743 3731 100 Plus
dup-PA 743 CG8171-PA 1..743 1..743 3731 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20103-PA 697 GI20103-PA 1..696 1..742 2711 72.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20043-PA 730 GL20043-PA 1..729 1..742 2999 79.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20864-PA 730 GA20864-PA 1..729 1..742 2995 79.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20140-PA 744 GM20140-PA 1..744 1..743 3784 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25618-PA 737 GD25618-PA 1..737 1..743 3615 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19871-PA 721 GJ19871-PA 1..720 1..742 2716 72.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23207-PA 721 GK23207-PA 1..720 1..742 2707 72.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\dup-PA 743 GE14156-PA 1..743 1..743 3660 94.6 Plus